KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:48 2014 Check: 00 .. Name: ENSTTRP00000013544/1-597 Len: 662 Check: 2977 Weight: 1.00 Name: ENSP00000312741/1-588 Len: 662 Check: 6433 Weight: 1.00 Name: bmy_01431T0/1-488 Len: 662 Check: 7746 Weight: 1.00 Name: BACU013623/1-510 Len: 662 Check: 8654 Weight: 1.00 Name: ENSBTAP00000014336/1-579 Len: 662 Check: 6649 Weight: 1.00 // 1 50 ENSTTRP00000013544/1-597 RDFEPLINLA LDGTELCNPQ GLLRQPLRSF RPSSECCYPA GTLNTLGLQQ ENSP00000312741/1-588 ---------- ---------- ---------- ---------- ---------- bmy_01431T0/1-488 ---------- ---------- ---------- ---------- ---------- BACU013623/1-510 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014336/1-579 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013544/1-597 SGAAAGWECP GTCVSHEVGT RTMSSCVSSQ PSSDRAAPQD ELGGGSGNSN ENSP00000312741/1-588 ---------- ---------- --MSSCVSSQ PSSNRAAPQD ELGGRGSS-- bmy_01431T0/1-488 ---------- ---------- ---------- ---------- ---------- BACU013623/1-510 ---------- ---------- --MSSCVSSQ PSSDRAAPQD ELGGGGGSSN ENSBTAP00000014336/1-579 ---------- ---------- --MSSCISSQ PSSDRAAPQD ELGGGGGSS- 101 150 ENSTTRP00000013544/1-597 SSEGQKPCEA LRGLSSLSIH LGMESFIVVT ECEPACAVDS GLARDRPLEA ENSP00000312741/1-588 SSESQKPCEA LRGLSSLSIH LGMESFIVVT ECEPGCAVDL GLARDRPLEA bmy_01431T0/1-488 ---------- ---------- ---------- ---------- ---------- BACU013623/1-510 SSEGQKPCEA LRGLSSLSIH LGMESFIVVT ECEPACAVDG GLARDRPL-A ENSBTAP00000014336/1-579 SSEGQKPCEA LRGLSSLSIR LGMESFIVVT ECEPVCAVDH GLTRDRPLEA 151 200 ENSTTRP00000013544/1-597 PGGEVPLNVS GSQARPHLSS RKLSL-ERSL --------LD ANGRCVYPAL ENSP00000312741/1-588 DGQEVPLDTS GSQARPHLSG RKLSLQERSQ GGLAAGGSLD MNGRCICPSL bmy_01431T0/1-488 -GGEVRLDVS GSQARLHLSS RKLSLQERSL --------LD ANGRCVYPAL BACU013623/1-510 PGGEVRLDVS GSQARPHLSS RKLSLQERSL --------LD ANGRCVYPAL ENSBTAP00000014336/1-579 HGGEITLDAS GSQARPHLSG RKLSLQERSL --------LD ANGRCVYPAL 201 250 ENSTTRP00000013544/1-597 PHSPVGSPQS SPRLP-RPTV ESHHVXXXXX XDCVQLNQYT LKDEIGKXXX ENSP00000312741/1-588 PYSPVSSPQS SPRLPRRPTV ESHHVSITGM QDCVQLNQYT LKDEIGKGSY bmy_01431T0/1-488 PHSPVGSPQS SPRLPRRPTV ESHHVSITGM QDCVQLNQYT LKDEIGKGSY BACU013623/1-510 PHSPVGSPQS SPRLPRRPTV ESHRVSITGM QDCVQLNQYT LKDEIGKGSY ENSBTAP00000014336/1-579 PHSPVGSPQS SPRLPRRPTV ESHHVSITGM QDCVQLNQYT LKDEIGKGSY 251 300 ENSTTRP00000013544/1-597 XXXXXXXXXX XXXXXAMKVL SKKKLVRQAG FPRRPPPRGT RPAPRGCIQP ENSP00000312741/1-588 GVVKLAYNEN DNTYYAMKVL SKKKLIRQAG FPRRPPPRGT RPAPGGCIQP bmy_01431T0/1-488 GVVKLAYNEN DNTYYAMKVL SKKKLIRQAG FPRRPPPRGT RPAPRGCIQP BACU013623/1-510 GVVKLAYNEN DNTYYAMKVL SKKKLIRQAG FPRRPPPRGT RPAPRGCIQP ENSBTAP00000014336/1-579 GVVKLAYNEN DNTYYAMKVL SKKKLIRQAG FPRRPPPRGT RPAPGGCIQP 301 350 ENSTTRP00000013544/1-597 RGPIEQVYQE IAILKKLDHP NVVKLVEXXX XXXXXXXXXX FELVNQGXXX ENSP00000312741/1-588 RGPIEQVYQE IAILKKLDHP NVVKLVEVLD DPNEDHLYMV FELVNQGPVM bmy_01431T0/1-488 RGPIEQVYQE IAILKKLDHP NVVKLVEVLD DPNEDHLYMV FELVNQGPVM BACU013623/1-510 RGPIEQVYQE IAILKKLDHP NVVKLVEVLD DPNEDHLYMV FELVNQGPVM ENSBTAP00000014336/1-579 RGPIEQVYQE IAILKKLDHP NVVKLVEVLD DPNEDHLYMV FELVNQGPVM 351 400 ENSTTRP00000013544/1-597 XXXXXXXXXX XXXXXXXXXX XXXXXXXHYQ KIIHRDIKPS NLLVGEDGHV ENSP00000312741/1-588 EVPTLKPLSE DQARFYFQDL IKGIEYLHYQ KIIHRDIKPS NLLVGEDGHI bmy_01431T0/1-488 EVPTLKPLSE DQARFYFQDL IKGIEYLHYQ KIIHRDIKPS NLLVGEDGHV BACU013623/1-510 EVPTLKPLSE DQARFYFQDL IKGIEYLHYQ KIIHRDIKPS NLLVGEDGHV ENSBTAP00000014336/1-579 EVPTLKPLSE DQARFYFQDL IKGIEYLHYQ KIIHRDIKPS NLLVGEDGHI 401 450 ENSTTRP00000013544/1-597 KIADFGVSNE FKGSDALLSN TVGTPAFMAP ESLSETRKIF SGKALDVWAM ENSP00000312741/1-588 KIADFGVSNE FKGSDALLSN TVGTPAFMAP ESLSETRKIF SGKALDVWAM bmy_01431T0/1-488 KIADFGVSNE FKGSDALLSN TVGTPAFMAP ET-------- -----DVPAI BACU013623/1-510 KIADFGVSNE FKGSDALLSN TVGTPAFMAP ESLSETRKIF SGKALDVWAM ENSBTAP00000014336/1-579 KIADFGVSNE FKGSDALLSN TVGTPAFMAP ESLSETRKIF SGKALDVWAM 451 500 ENSTTRP00000013544/1-597 GVTLYCFVFG QCPFMDERIM CLHSKIKSQA LEFPDQPDIA EDLKDLITRM ENSP00000312741/1-588 GVTLYCFVFG QCPFMDERIM CLHSKIKSQA LEFPDQPDIA EDLKDLITRM bmy_01431T0/1-488 DGHPVPDLSS QCPFMDERIM CLHSKIKSQA LEFPDQPDIA EDLKDLITRM BACU013623/1-510 GVTLYCFVFG QCPFMDERIM CLHSKIKSQA LEFPDQPDIA EDLKDLITRM ENSBTAP00000014336/1-579 GVTLYCFVFG QCPFMDERIM CLHSKIKSQA LEFPDQPDIA EDLKDLITRM 501 550 ENSTTRP00000013544/1-597 LDKNPELRIV VPEIKLHPWV TRHGAEPLPS EDENCTLVEV TEEEVENSVK ENSP00000312741/1-588 LDKNPESRIV VPEIKLHPWV TRHGAEPLPS EDENCTLVEV TEEEVENSVK bmy_01431T0/1-488 LDKNPESRIV VPEIKLHPWV TRHGAEPLPS EDENCTLVEV TEEEVENSVK BACU013623/1-510 LDKNPESRIV VPEIKLHPWV TRHGAEPLPS EDENCTLVEV TEEEVENSVK ENSBTAP00000014336/1-579 LDKNPESRIV VPEIKLHPWV TRHGAEPLPS EDENCTLVEV TEEEVENSVK 551 600 ENSTTRP00000013544/1-597 HIPSLATVIL VKTMIRKRSF GNPFEGSRRE ERSLSAPGNL LIKKPTRECE ENSP00000312741/1-588 HIPSLATVIL VKTMIRKRSF GNPFEGSRRE ERSLSAPGNL LTKKPTRECE bmy_01431T0/1-488 HIPSLATVIL VKTMIRKRSF GNPFEGSRRE ERSLSAPGNL LIKKPTRECE BACU013623/1-510 HIPSLATVIL VKTMIRKRSF GNPFEGSRRE ERSLSAPGNL I--------- ENSBTAP00000014336/1-579 HIPSLATVIL VKTMIRKRSF GNPFEGSRRE ERSLSAPGNL LGKKPTRECE 601 650 ENSTTRP00000013544/1-597 PLSEPKT--- ---------- ---------- ---------- ---------- ENSP00000312741/1-588 SLSELKEARQ RRQPPGHRPA PRGGGGSALV RGSPCVESCW APAPGSPARM bmy_01431T0/1-488 PLSEPKEARQ RRQPPGPQPA SRGGGGSALV KGGPGVESWG AVAPGSGKRT BACU013623/1-510 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014336/1-579 PLSEPKEARQ RRQPPGPRTG PRRGRGSALM KGGPGVESWG VPGPCSLEHT 651 700 ENSTTRP00000013544/1-597 ---------- -- ENSP00000312741/1-588 HPLRPEEAME PE bmy_01431T0/1-488 HPPRPDEVME -- BACU013623/1-510 ---------- -- ENSBTAP00000014336/1-579 HPARPDEVME --