KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:52:51 2014 Check: 00 .. Name: ENSP00000295980/1-667 Len: 781 Check: 9415 Weight: 1.00 Name: ENSTTRP00000007140/1-669 Len: 781 Check: 8816 Weight: 1.00 Name: ENSBTAP00000014373/1-668 Len: 781 Check: 2169 Weight: 1.00 Name: bmy_00441T0/1-722 Len: 781 Check: 8515 Weight: 1.00 // 1 50 ENSP00000295980/1-667 ---------- ---------- ---------- ---------- -----MGSSR ENSTTRP00000007140/1-669 ---------- ---------- ---------- ---------- -----MGSPG ENSBTAP00000014373/1-668 ---------- ---------- ---------- ---------- -----MGSPR bmy_00441T0/1-722 MLHEQEEAMG RRGGSPQRME PHQHRKPQET RRCSHVLDTL TPRKPMGSPE 51 100 ENSP00000295980/1-667 LAALLLPLLL IVIDLSDSAG IGFRHLPHWN TRCPLASHTD DSFTGSSAYI ENSTTRP00000007140/1-669 LAALLLPLVQ LLLGLSASAS IGCPYLPSWS TLCLLASHMD DSFTGRSAQI ENSBTAP00000014373/1-668 LAALLLPLLQ LLTGLSASAG IGCPFLPRWS TRCLLASRMD GSFTGRSAQI bmy_00441T0/1-722 LSALLLPILQ LLIGLSAAAG IGCPYLPSWS TLCLLASHVV R--------- 101 150 ENSP00000295980/1-667 PCRTWWAL-F STKPWCVRVW HCS----RCL CQHLLSGG-S GLQRGLFHLL ENSTTRP00000007140/1-669 PRHTLSAFPP SPKPWRAWLC HCP----CCW CLHLVSDP-S GLQWDWLHLL ENSBTAP00000014373/1-668 PHHIQPAPHL SPKPWCACCC HCP----HCW CLHLVSGP-S GLQWGWLRLL bmy_00441T0/1-722 ---------- -----CACCC WVGTPGWHRL ALCLQDDSFT GLQWGWLHLL 151 200 ENSP00000295980/1-667 VQKSKKSSTF KFYRRHKMPA PAQRKLLPRR HLSEKSHHI- --SIPSPDIS ENSTTRP00000007140/1-669 VQKSKKSYKF RFCRRHTMPA SAQRKLLSSR CLSEKGHHI- --SVPSPDTS ENSBTAP00000014373/1-668 VQKSEKSYKF WLCRRHRMPA SAQRKLLSSC CLSEKGHHN- --SSLSPDSS bmy_00441T0/1-722 VQKSKKSYKF RFCKRHTMPA SAQTPPTRGC VPKEPNLQIQ RKGKFSPNVA 201 250 ENSP00000295980/1-667 HKGLRSKRTQ PSDPETWESL PRLDSQRHGG PEFSFDLLPE ARAIRVTISS ENSTTRP00000007140/1-669 HKGLRSKRTQ PADPEKGEVL SKRGSQRLGG PEFSFDLLPE ARVIQVTIPP ENSBTAP00000014373/1-668 HKGLRSKRTQ PVDPEAGEGL SRSGSQKLGG PEFSFDLLPE TRAIQVTIPP bmy_00441T0/1-722 HKGL------ ---------- ---------- ---------E ARVIQVTVPP 251 300 ENSP00000295980/1-667 GPEVSVRLCH QWALECEELS SPYDVQKIVS GGHTVELPYE FLLPCLCIEA ENSTTRP00000007140/1-669 GPEVSVRLCH QWALECEELS RPFDAQKIVS GGCTVDLPYE FLLPCLCIEV ENSBTAP00000014373/1-668 GPEVSVRLCH QWALECEDLS HPFDAQKIVP GSHTVDLPYE FLLPCLCIEA bmy_00441T0/1-722 GPEVSVRLCH QWALECEELS RPFDAQKIVS GGCTVDLPYE FLLPCLCIEV 301 350 ENSP00000295980/1-667 SYLQEDTVRR KKCPFQSWPE AYGSDFWKSV HFTDYSQHTQ MVMALTLRCP ENSTTRP00000007140/1-669 SYLQEDTVRH KKCPFQSWPE AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014373/1-668 SYLQEDTVRR KKCPFQDQPE AYGSDFWESM NFTDHSQHNQ MVMAVTLRCP bmy_00441T0/1-722 SYLQEDTVRH KKCPFQSWPE AYGSDFWESV NFTDHSQHSQ MIMALTLRCP 351 400 ENSP00000295980/1-667 LKLEAALCQR HDWHTLCKDL PNATARESDG WYVLEKVDLH PQLCFKFSFG ENSTTRP00000007140/1-669 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLH PQLCFKSSFG ENSBTAP00000014373/1-668 LKLEASLCQR RGWPTLCEDL PNAMARESEG WYVVEKVDLH PQLCFKFSFG bmy_00441T0/1-722 LKLDASLCQR RGWHTLCEDV PNATARESEG WYVLEKVDLH PQLCFKFSFG 401 450 ENSP00000295980/1-667 NSSHVECPHQ TG-------- ---------- ---------- ---------- ENSTTRP00000007140/1-669 NSSHVECPHQ TF-------- ---------- ---------- ---------- ENSBTAP00000014373/1-668 NSSHVECPHR TF-------- ---------- ---------- ---------- bmy_00441T0/1-722 NSSHVECPHQ TFGEPISDPG WDPFPPFHPH ATAAKPNSIP ALTSLSTAAR 451 500 ENSP00000295980/1-667 ---------- ---------S LTSWNVSMDT QAQQLILHFS SRMHATFSAA ENSTTRP00000007140/1-669 ---------- --------VA APSWNVSMDT QAQQLVLHFS SRMPATFSAA ENSBTAP00000014373/1-668 ---------- ---------A APSWNVSMDT QAQQVVLHFS SRTHVTFSAA bmy_00441T0/1-722 LLSLPTKHHL LHDALSYPLA APSWNVSMDT QAQQLVLHFS SRMPATFSAA 501 550 ENSP00000295980/1-667 WSLPGLGQDT LVPPVYTVSQ ARGSSPVSLD LIIPFLRPGC CVLVWRSDVQ ENSTTRP00000007140/1-669 WSHSGLGQDS MVPPVYNVSQ TQGSSSVTLD LIVPFLRPGG CVLVWRSDVQ ENSBTAP00000014373/1-668 WNHPGLGQDS VVPPVYSVSQ TQGSTPVTLD LIVPFLRPGG CVLVWRSDVQ bmy_00441T0/1-722 WSHSGLGQDS MLPPVYSVSQ TQGSSSVTLD LIVPFLRPGG CGLGGSVPSG 551 600 ENSP00000295980/1-667 FAWKHLLC-- -PDVSYRHLG LLILALLALL TLLGVVLALT CRRPQSGPGP ENSTTRP00000007140/1-669 FAWKHLLC-- -PDVSHRLLG LLILVLLAFT TLLGVVLVLT CQRPLSGPGR ENSBTAP00000014373/1-668 FAWKRLLC-- -PDVSHRRLG LLILALLAFT TLLGVVLVLT CRRPLSGPER bmy_00441T0/1-722 VEVRCPVCLE APPVSGWLLG LLILALLAFT TLLGVVLVLT CQRPLSGPGR 601 650 ENSP00000295980/1-667 ARPVLLLHAA DSEAQRRLVG ALAELLRAAL GGGRDVIVDL WEGRHVARVG ENSTTRP00000007140/1-669 ARPVLLLHVA DSEAQRRLVG ALAELLRAAL GGGRDVIVDL WEGTRVARVG ENSBTAP00000014373/1-668 APPVLLLHVA ESEAQRRLVG ALAELLRAAL GGGRDVIVDL WEGTRVARVG bmy_00441T0/1-722 ARPVLLLHVA DSEAQRRLVG ALAELLRAAL GGGRDVIVDL WEGTRVARVG 651 700 ENSP00000295980/1-667 PLPWLWAART RVAREQGTVL LLWSGADLRP VSGPDPRAAP LLALLHAAPR ENSTTRP00000007140/1-669 PLPWLWAARA RVARERGTVL LLWSCASPSP AGGPDARAAP LHTLLRAAPR ENSBTAP00000014373/1-668 PLPWLWAARA RVARERGTVV LLWSSAGPSP TGGPDPRAAP LRALLRAAPR bmy_00441T0/1-722 PLPWLWAARA RVARERGTVL LLWSCASPSP AGGPDARAAP LRALLRAAPR 701 750 ENSP00000295980/1-667 PLLLLAYFSR LCAKGDIPPP LRALPRYRLL RDLPRLLRAL DARPFAEATS ENSTTRP00000007140/1-669 PLPLLAYFSR LCAKGDIPPP LRALPRYRLL QDLPRLLRAL DARTSTQATS ENSBTAP00000014373/1-668 PLLLLVYFSR LCAKGDIPPP LRALPRYRLL HDLPRLLRAL DARASTEATT bmy_00441T0/1-722 PLPLLAYFSR LCAKGDIPPP LRALPRYRLL QDLPRLLRAL DARTSTQATS 751 800 ENSP00000295980/1-667 WGRLGARQRR QSRLELCSRL EREAARLADL G ENSTTRP00000007140/1-669 WGRLAARPCL RGRVELCRQL EREAAKLADQ G ENSBTAP00000014373/1-668 RGRFVAQPRL RGRVELCRRL ELEAAKLADQ G bmy_00441T0/1-722 GGRLAARPCL RGRVELCRQL EREAAKLADQ G