KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:52 2014 Check: 00 .. Name: BACU015165/1-988 Len: 991 Check: 6702 Weight: 1.00 Name: ENSP00000392511/1-981 Len: 991 Check: 7275 Weight: 1.00 Name: ENSBTAP00000014379/1-977 Len: 991 Check: 5277 Weight: 1.00 Name: ENSTTRP00000007144/1-977 Len: 991 Check: 8730 Weight: 1.00 Name: bmy_00439T0/1-977 Len: 991 Check: 5744 Weight: 1.00 // 1 50 BACU015165/1-988 MAPSPWGCVY GRLLLLLLLS LGAGSALGRG LPRPLEDLEP HLIPGAHPKG ENSP00000392511/1-981 MASSPWGCVC GLLLLLLPL- LGTGPALGRG FPRPLENSEI PMIPGAHPKG ENSBTAP00000014379/1-977 MAPSPWGCVH GLLLLLPLLS LGASPALGRG LPRPLEDSEP HLAPGAQGKG ENSTTRP00000007144/1-977 MAPSPWGCVY GLLLLLLLLS LGAGSALGRG LPRPLEDLEP HLIPGAHPKG bmy_00439T0/1-977 MAPSPWGCVY GRLLLLLLLS LGAGSALGRG LPRPLEDLEP HLIPGAHPKG 51 100 BACU015165/1-988 PVGTEPQAFD FFWEKPRDES PWNSNVPQVP AEEMPERPTD S-LGPALHGP ENSP00000392511/1-981 SVGSEPQAFD VFPENPRADS HRNSDVRHAP AEEMPEKPVA SPLGPALYGP ENSBTAP00000014379/1-977 PLDTERQAFD FFWENPRDES PWNASVPQVP AEEMPERPED A-LGPALHGP ENSTTRP00000007144/1-977 PVGTEPQAFD FFWEKPRDES PWNSNVPQVP AEEVPARPTD S-LGPALHGP bmy_00439T0/1-977 PVGTEPQAFD FFWEKPRDKS PWNSNVPQVP AEEMPERPTD S-LGPALHGP 101 150 BACU015165/1-988 KAAHGAQREG LPVTDDLQVA RGPVFQGWTG PPESQESVEQ EAPAPYPVGT ENSP00000392511/1-981 KAAQGAQRER LPVTDDLQMA QGPSSHGWTG PLDSQELLQQ EAVAPHPVGH ENSBTAP00000014379/1-977 KAAHGAQKGG LPVTDDLQMA RGPISQGWTG PPDSQEPMEQ EAPVPYPVGA ENSTTRP00000007144/1-977 KASHGVQREG LPVTDDLQVA RGPIFQGWTG PPESQESMEQ EAPAPYPVGT bmy_00439T0/1-977 KAAHGAQREG LPVTDDLQVA RGPIFQGWTG PPESQESTEQ EAPAPYPVGX 151 200 BACU015165/1-988 PHLTFTPTTP RLQLGLATVP PIPGQPGSQV GQRPPRDEGL VAKAKIGVSE ENSP00000392511/1-981 PHLTFIPTTP RRQLRVATVP PSLQHEGQE- GQWPPRDEGL KAKTKSRVPP ENSBTAP00000014379/1-977 PHLPFFPTTP RLHLGLATVP PTSGGPGGRV GQLPPRDEGL LAKGKTRVSE ENSTTRP00000007144/1-977 PHLTFIPTTP RLQLGLATVP PTPGQPGSQV GQRPPRDEGL VAKAKIRVPE bmy_00439T0/1-977 PHLTFIPTTP RLQLGLATVP PIPGQPGSQV GQRPPRDEGL VAKAKIGVSE 201 250 BACU015165/1-988 TSPWDHKGPP HTLAPHPGTI MRPGLKEQGG SEEDFQEAAQ GPLFTQQDPA ENSP00000392511/1-981 TSPSDHQGPP HTLVSHSGTV KRPVLEGQGG FEEHLQEAAQ GPHFTQQDPA ENSBTAP00000014379/1-977 TFPEDHKGPS PTLVPHPGIV ARPGMEEQGG GEEDFQEAVQ GPLSTQQGPA ENSTTRP00000007144/1-977 TSPWHHKGPP HTLAPRPGTV MRPGLREQGG SEEDFQEAAQ GPLLTQQEPA bmy_00439T0/1-977 TSPWDHKGPP HTLVPHPGTI MRPGLKEQGG SEEDFQEAAQ GPLSTQQDPA 251 300 BACU015165/1-988 APDVGSVSPA EAASSQEPGS QPDLALARSL PPAEELPMEL PKKAGGGETW ENSP00000392511/1-981 APDVGSVPPV EVVYSQEPGA QPDLALARSL PPAEELPVET PKRAGAEVSW ENSBTAP00000014379/1-977 APDTGSVSPA EGASSQEPES QPDLALARSL PPAEEQPMEL PKTAGAGEAW ENSTTRP00000007144/1-977 APDAGSASPA EVASSQEPGS QPDLALARSL PPAEELPMEL PKKAGGGETW bmy_00439T0/1-977 APDVGSVSPA EAASSQEPRS QPDLALARSL PPAEELPMEL PKKAGGGETW 301 350 BACU015165/1-988 EVSIPSPSPK QTDLPDVRGS SGPQPSGPPA SETPNGQPKP EIAAMNGADP ENSP00000392511/1-981 EVSSPGPPPK QADLPDAKDS PGPQPTDPPA SEAPDRPSKP ERAAMNGADP ENSBTAP00000014379/1-977 EVSSSSPSPK EAHLPDVRGS PGPQPSDLPS SETSDGQPKP ELAAMNGADP ENSTTRP00000007144/1-977 EVSIPSPSPK QTDLPDVRGS SGPQPSGLPA SETPYGQPKP EIAAMNGADP bmy_00439T0/1-977 EVSIPSPSPK QTDLPDVRGS SGPQPSGPPA SETPNGQPKP EIAAMNGADP 351 400 BACU015165/1-988 ISPQRVRGAV EAPGTPKSLI PGLSDPGPTT NGTESPGGAL QPDEAEEWPG ENSP00000392511/1-981 ISPQRVRGAV EAPGTPKSLI PGPSDPGPAV NRTESPMGAL QPDEAEEWPG ENSBTAP00000014379/1-977 ISPQRVRGAV EAPGTPKSLI PGPLDLGPTA NRTESPVGSL KPDEAEEWPG ENSTTRP00000007144/1-977 ISPQRVRGAV EAPGTPKSLI PGPSDPGPTT NGTESPVGAL QPDEAEEWPG bmy_00439T0/1-977 ISPQRVRGAV EASGTPKSLI PGPLDPGPTT NGTESPVGAL QPDEAEEWPG 401 450 BACU015165/1-988 RPQSHPPAPP VQAPSTSRRG LIRVTTQRAL GQPPPPEPSA SSAASVPASS ENSP00000392511/1-981 RPQSHPPAPP VQAPSTSRRG LIRVTTQRAL GQPPPPEPTA SSMASAPASS ENSBTAP00000014379/1-977 RPQSHPPAPP VQAPSTSRRG LIRVTTQRAL GQPPPPEPSA SSMASVPASS ENSTTRP00000007144/1-977 RPQSHPPAPP VQAPSTSRRG LIRVTTQRAL GQPPPPEPSA SSVASVPASS bmy_00439T0/1-977 RPQSHPPAPP VQAPSTSRRG LIRVTTQRAL GQPPPPEPSA SSVASVPASS 451 500 BACU015165/1-988 PPANATSPPL RWGPLRRVLS FSWELHVYGV GVLFLLPALL ALASLAAAPA ENSP00000392511/1-981 PPANATAPPL RWGPLRRVLS FSWELHVYGV GVLFLLPALL ALAALAAAPA ENSBTAP00000014379/1-977 PPTNATAPPL RWGPLRRVLS FSWELHVYGV GVLFLLPALL ALASLAAAPA ENSTTRP00000007144/1-977 PPANATSPPL RWGPLRRVLS FSWELHVYGV GVLFLLPALL ALASLAAAPA bmy_00439T0/1-977 PPANATSPPL RWGPLRRVLS FSWELHVYGV GVLFLLPALL ALASLAAAPA 501 550 BACU015165/1-988 GPRLALVAAV LVLVASGLRS AYMLTDPYGS QARLGLRAGL VLYNLPFPLL ENSP00000392511/1-981 GPRLALVAAV LVLVASALRS AYMLTDPYGS QARLGVRGGL VLYNLPFPLL ENSBTAP00000014379/1-977 GPRLALVAAV LVLVAGGLRS AYMLTDPYGS QARLGLRAGL VLYNLPFPLL ENSTTRP00000007144/1-977 GPRLALVAAV LVLVASGLRS AYMLTDPYGS QARLGLRAGL VLYNLPXXXX bmy_00439T0/1-977 GPRLALVAAV LVLVASGLRS AYMLTDPYGS QARLGLRAGL VLYNLPFPLL 551 600 BACU015165/1-988 LTALAALTLL GLGAGLPQQL QNPLLLGALA LAHGLGLLAT DLLSARPALN ENSP00000392511/1-981 LTALAALTLL GLGAGLPPPL QNPLLLGAVA LVHGVGLLAT DLLSTWSVLN ENSBTAP00000014379/1-977 LTALAALTLL GLGAGLPQQL QNPLLLGALA LTHGLGLLTT DLLSVRPALN ENSTTRP00000007144/1-977 XXALAALTLL GLGAGLPQQL QNPLLLGALA LAHGLGLLAT DLLSARPAFN bmy_00439T0/1-977 LTALAALTLL GLGAGLPQQL QNPLLLGALA LAHGLGLLAT DLLSAKPALN 601 650 BACU015165/1-988 LLAQGLSCAW GASVALGTLC LCRRRLLDGP RGWDASPGPR LLAVAGAPGV ENSP00000392511/1-981 LLTQGLSCAW GAAVALGTLC LCRRRLLDGP RGWDASPGPR LLAVAGALGL ENSBTAP00000014379/1-977 LLAQGLSCAW GAAVALGTLC LCRRRLLDGP RGWDASPGPR LLAVAGALGL ENSTTRP00000007144/1-977 LLAQGLSCAW GASVALGTLC LCRRRLLDGP RGWDASPGPR LLAVAGALGL bmy_00439T0/1-977 LLAQGLSCAW GASVALGTLC LCRRRLLDGP RGWDASPGPR LLAVAGALGL 651 700 BACU015165/1-988 AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392511/1-981 LASGLQLAAA LWL------- -YPGPGRVGR FSWAWWGVHF WLRLLELTWA ENSBTAP00000014379/1-977 LASGLQLAAA LWL------- -YPGPGRVGR FSWAWWGVHF WLRLLELTWA ENSTTRP00000007144/1-977 LASGLQLAAA LWL------- -YPGPGRVGH FSWAWWGVHF WLRLLELTWA bmy_00439T0/1-977 LASGLQLAAA LWL------- -YPGPGRVGH FSWAWWGVHF WLRLLELTWA 701 750 BACU015165/1-988 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392511/1-981 LALALAAVAA ARPRPPTEHA CWAKLMRLAC PAPSGKSEVP ERPNNCYAGP ENSBTAP00000014379/1-977 LTLALAALAA ARPRPPTEHA CWAKLLRLAC PTPSSKSEVP ERPNNCYAGP ENSTTRP00000007144/1-977 LTLALAALAA ARPRPPTEHA CWAKLLRLAC PAPSGKSEVP ERPNNCYAGP bmy_00439T0/1-977 LTLALAALAA ARPRPPTEHA CWAKLLRLAC PTPSGKSEVP ERPNNCYAGP 751 800 BACU015165/1-988 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392511/1-981 SNVGAGSLDI SKSLIRNPAE SGQLATPSSG AWGSAASLGR GPQGGPGLSR ENSBTAP00000014379/1-977 SGVSAGTLDI SKSLIRNPAE GGPPATPSSG AWGSATSLSR GPQGGPGLSR ENSTTRP00000007144/1-977 SSVGAGTLDI SKSLIRNPAE GGPPATPSSG AWGSAASLGR GPLGGPGLSR bmy_00439T0/1-977 SSVGAGTLDI SKSLMRNPAE GGPPATPSSG AWGSAASLGR GPLGGPGLSR 801 850 BACU015165/1-988 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392511/1-981 NGVGPAPSLS ELDLRPPSPI NLSRSIDAAL FREHLVRDSV FQRCGLRGLA ENSBTAP00000014379/1-977 SSVGPAPSIS ELDLRPPSPI NLSRSIDAAL FREHLVQDSV FRRCGLRCLA ENSTTRP00000007144/1-977 SSMGPAPSMS ELDLRPPSPI NLSRSIDAAL FREHLVRDSI FRRCGLRGLA bmy_00439T0/1-977 SSMGPAPSMS ELDLRPPSPI NLSRSIDAAL FREHLVRDSI FRRCGLRGLA 851 900 BACU015165/1-988 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000392511/1-981 SPPPGGALRP RRGSHPKAEL DDAGSSLLRG RCRSLSDVRV RGPVPQHVVE ENSBTAP00000014379/1-977 SPPPGGALRS RRGSHPDAEL DGLGSSLLRG RCRSLSDVRV RGPVPPHVVE ENSTTRP00000007144/1-977 SPPPGGALRP RRGSHPDAEL DGAGSSLLRG RSRSLSDVRV RGPVPPHVAD bmy_00439T0/1-977 SPPPGGALRP RRGSHPDAEL DGAGSSLLRG RSRSLSDVRV RGPVPPHVVD 901 950 BACU015165/1-988 XXXXXXXXXX XXXXXXXSRG SLKISWNPWR HGLSSMDSLP LDELPSTVQL ENSP00000392511/1-981 APDGAAAAAS GSSLDSFSRG SLKISWNPWR HGLSSVDSLP LDELPSTVQL ENSBTAP00000014379/1-977 EADA---AAS GSSVDSFSRG SLKISWNPWR HGLSSVDSLP LDELPSTVQL ENSTTRP00000007144/1-977 EPEG---AAS GSSVDSFSRG SLKISWNPWR HGLSSMDSLP LDELPSTVQL bmy_00439T0/1-977 EPVG---AAS GSSVDSFSRA SLKISWNPWR HGLSSMDSLP LDELPSTVQL 951 1000 BACU015165/1-988 LSAPAPAPGP --ARPGEPQN GIQPRCKPGD SRSASSDTIE L ENSP00000392511/1-981 LPAPTPAPDS TAARQGDGQG EVQPRGKPGE SRSASSDTIE L ENSBTAP00000014379/1-977 LSTPAPAPAP --AWSGEPQN GVQPRCKTGD SRSASSDTIE L ENSTTRP00000007144/1-977 LSAPAPAPGP --ARPGEPQN GIQPQCKPGD SRSASSDTIE L bmy_00439T0/1-977 LSAPAPAPGP --ARPGEPQN GIQPRCKPGD SRSASSDTIE L