KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:54 2014 Check: 00 .. Name: ENSP00000299162/1-517 Len: 519 Check: 4715 Weight: 1.00 Name: ENSBTAP00000014397/1-519 Len: 519 Check: 3181 Weight: 1.00 Name: ENSTTRP00000006054/1-515 Len: 519 Check: 6090 Weight: 1.00 Name: bmy_08282T0/1-260 Len: 519 Check: 4692 Weight: 1.00 Name: BACU019164/1-518 Len: 519 Check: 9405 Weight: 1.00 // 1 50 ENSP00000299162/1-517 MIESDTSSIM SGIIRNSGQN HHPSPQEYRL LATTSDDDLP GDLQSLSWLT ENSBTAP00000014397/1-519 MIESDISSMM SGIIRNSGQN HHPSPQEYRL LAATCDDNLP GDLQSLSWLT ENSTTRP00000006054/1-515 MIESDISPMM SGIIRNSGQN HHPSPQEYRL LAATSNDDLP GDLQSLSWLT bmy_08282T0/1-260 ---------- ---------- ---------- ---------- ---------- BACU019164/1-518 MIESDISSMM SGIIRNSGQN HHPSPQEYRL LATTGDDDLP GDLQSLSWLT 51 100 ENSP00000299162/1-517 AVDVPRLQQM ASGRVDLGGP CVPHPHPG-A LAGVADLHVG ATPSPLLHGP ENSBTAP00000014397/1-519 AVDVPRLQQM ASGRVDLGGP SAPHTHPGSA LARAADLHVA ATPGHLLQGP ENSTTRP00000006054/1-515 AVDVPRLQQV TSGRVDLGGP SAPHAHP--X XXXXXXXXXX XXXXXXXXXX bmy_08282T0/1-260 ---------- ---------- ---------- ---------- ---------- BACU019164/1-518 AVDVPRLQQR ASGHVDLGGP SAPHAHPG-R RGGEMRWREG VPPQGSWREG 101 150 ENSP00000299162/1-517 AGMAPRGMPG LGPITGHR-D SMSQFPVGGQ PSSGLQDPPH LYSPATQPQF ENSBTAP00000014397/1-519 PGMAPQGVLG LSPLTNHGAS QMNQFAVGGQ PSSSLQNPPQ LYSAASQPQF ENSTTRP00000006054/1-515 XXXXXXXXXX XXXXXXXQGA SMNQF-VGGQ PASS-QDPPQ LYSPTSQPQF bmy_08282T0/1-260 ---------- ---------- ---------- ---------- ---------- BACU019164/1-518 GVRQGWSPPL ILCLLLSRPQ QMNQFPVGGQ PTSSLQDPPQ LYSPNSQPQF 151 200 ENSP00000299162/1-517 PLPPGAQQCP PVGLYGPPFG VRPPYPQPHV AVHSSQELHP KHYPKPIYSY ENSBTAP00000014397/1-519 PLPSGVQQCA PVGLYGSAFG ARPPYPQPRM AVHSSQELHP KHYPKPIYSY ENSTTRP00000006054/1-515 PLPPGVQQCA PVGLYGSPFG ARPPYPQPRM AVHSSQELHP KHYPKPIYSY bmy_08282T0/1-260 ---------- ---------- ---------- ---------- ---------- BACU019164/1-518 PLPPGVQQCA PVGLYGSPFG ARPPYPQPRM AVHSSQELHP KHYPKPIYSY 201 250 ENSP00000299162/1-517 SCLIAMALKN SKTGSLPVSE IYSFMKEHFP YFKTAPDGWK NSVRHNLSLN ENSBTAP00000014397/1-519 SCLIAMALKN SKTGSLPVSE IYSFMKEHFP YFKTAPDGWK NSVRHNLSLN ENSTTRP00000006054/1-515 SCLIAMALKN SKTGSLPVSE IYSFMKEHFP YFKTAPDGWK NSVRHNLSLN bmy_08282T0/1-260 ---------- ---------- ---------- ---------- ---------- BACU019164/1-518 SCLIAMALKN SKTGSLPVSE IYSFMKEHFP YFKTAPDGWK NSVRHNLSLN 251 300 ENSP00000299162/1-517 KCFEKVENKM SGSSRKGCLW ALNLARIDKM EEEMHKWKRK DLAAIHRSMA ENSBTAP00000014397/1-519 KCFEKVENKM SGSSRKGCLW ALNLARIDKM EEEMHKWKRK DLAAIHRSMA ENSTTRP00000006054/1-515 KCFEKVENKM SGSSRKGCLW ALNLARIDKM EEEMHKWKRK DLAAIHRSMA bmy_08282T0/1-260 ---------M SGSSRKGCLW ALNLARIDKM EEEMHKWKRK DLAAIHRSMA BACU019164/1-518 KCFEKVENKM SGSSRKGCLW ALNLARIDKM EEEMHKWKRK DLAAIHRSMA 301 350 ENSP00000299162/1-517 NPEELDKLIS DRPESCRRPG KPGEPEAPVL THATTVAVAH GCLAVSQLPP ENSBTAP00000014397/1-519 NPEELDKLIS DRPESCRRPG KPGEPEAPAL THATTVAMAH SCLAVSQLPP ENSTTRP00000006054/1-515 NPEELDKLIS DRPESCRRPG KPGEPEAPVL THATTVAMAH SCLAVSQLPP bmy_08282T0/1-260 NPEELDKLIS DRPESCRRPR KPGEPEAPVL THATTVAMAH SCLAVSQLPP BACU019164/1-518 NPEELDKLIS DRPESCRRPR KPGEPEAPVL THATTVAMAH SCLAVSQLPP 351 400 ENSP00000299162/1-517 QPLMTLSLQS VPLHHQVQPQ AHLAPDSPAP AQTPPLHALP DLSPSPLPHP ENSBTAP00000014397/1-519 QPLMTLSLQS VPLHHQVQPQ AHLAPDSPAP AQTPPLHALP DLSPSPLPHP ENSTTRP00000006054/1-515 QPLMTLSLQS VPLHHQVQPQ AHLTPDSPAP AQTPPLHALP HLSPSPLPQP bmy_08282T0/1-260 QPLMTLSLQS VPLHHQVQPQ AHLTPDSPAP AQTPPLHALP DLSPSPLPQP BACU019164/1-518 QPLMTLSLQS VPLHHQVQPQ AHLTPDSPAP AQTPPLHALP DLSPSPLPQP 401 450 ENSP00000299162/1-517 AMGRAPVDFI NISTDMNTEV DALDPSIMDF ALQGNLWEEM KDEGFSLDTL ENSBTAP00000014397/1-519 AMGRAPVDFI NISTDMNTEV DALDPSIMDF ALQGNLWEEI KDEGFSLDTL ENSTTRP00000006054/1-515 TVGRAPVDFI NISTDMNTEV DALDPSIMDF ALQGNLWEEI KDEGFSLDTL bmy_08282T0/1-260 TMGRAPVDFI NISADMNTEV DALDPSIMDF ALQGNLWEEI KDEGFSLDTL BACU019164/1-518 TMGRAPVDFI NISADMNTEV DALDPSILDL ALQGNLWEEI KDEGFSLDTL 451 500 ENSP00000299162/1-517 GAFADSPLGC DLGASGLTPA SGGSDQSFPD LQVTGLYTAY STPDSVAASG ENSBTAP00000014397/1-519 GAFGDSPLGC ELGASGLTPV SGGSDQSFPD LQVTGLYAAY STPDSVATSA ENSTTRP00000006054/1-515 GAFGDSPLGC ELGASGLTPV SGGSDQSFPD LQVTGLYSTY STPDSAATPA bmy_08282T0/1-260 GAFGDSPLGC ELGASGLTPV SGGSDQSFPD LQVTGLYTTY STPDSAATSA BACU019164/1-518 GAFGDSPLGC ELGASGLTPV SGGSDQSFPD LQVTGLYTTY STPDSAATSA 501 550 ENSP00000299162/1-517 TSSSSQYLGA QGNKPIALL ENSBTAP00000014397/1-519 TTSSSQYLGA PGNKPIALL ENSTTRP00000006054/1-515 VTSSSQYLGA PGNKPIALL bmy_08282T0/1-260 ASSSSQYLGA PGNKPIALL BACU019164/1-518 ASSSSQYLGA PGNKPIALL