KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:52:54 2014 Check: 00 .. Name: BACU017711/1-201 Len: 627 Check: 2204 Weight: 1.00 Name: bmy_06881T0/1-589 Len: 627 Check: 8431 Weight: 1.00 Name: ENSTTRP00000007456/1-284 Len: 627 Check: 2520 Weight: 1.00 Name: ENSP00000321679/1-305 Len: 627 Check: 6669 Weight: 1.00 Name: ENSBTAP00000014398/1-305 Len: 627 Check: 2694 Weight: 1.00 // 1 50 BACU017711/1-201 ---------- ---------- ---------- ---------- ---------- bmy_06881T0/1-589 MPQVVRASSK HGGQGAGRGS VCHGALRGVR PALRSTSRSL ISVSGERVER ENSTTRP00000007456/1-284 ---------- ---------- ---MDFVSIQ QL-------- --VSG--VER ENSP00000321679/1-305 ---------- ---------- ---MDFISIQ QL-------- --VSGERVEG ENSBTAP00000014398/1-305 ---------- ---------- ---MNF-SIQ QL-------- --VSGERVER 51 100 BACU017711/1-201 ---------- ---------- ---------- ---------- ---------- bmy_06881T0/1-589 KELGRGHGVS DPGGW----- -----GPRRP RPGRGRNWTR RGGEFSSPRA ENSTTRP00000007456/1-284 NELGRGHGVS DPG------- -----AEARE RQELDEE--- RHERFSSPRA ENSP00000321679/1-305 KVLGFGHGVP DPGAWPSDWR RGPQEAVARE KLKLEEEKKK KLERFNSTRF ENSBTAP00000014398/1-305 TKLECGHGVP DPGGGLRSWR LGPQEAEARE RQKLDEEKRR RLERFNSSRT 101 150 BACU017711/1-201 ---------- ---------- ---------- ---------- ---------- bmy_06881T0/1-589 NLESLADLET LVQRRREKRL KRRVPARAPE PEVKLQPLAQ LEPVDLEAFL ENSTTRP00000007456/1-284 NLESLADLET LVRRRG-KRL KRRVPARAPE PEVKPQPLAQ LEPVDLEKFL ENSP00000321679/1-305 NLDNLADLEN LVQRRK-KRL RHRVPPRKPE PLVKPQSQAQ VEPVGLEMFL ENSBTAP00000014398/1-305 NLENLADLEK LVQRRKEKRL KRRVPPKAPQ PEVKPQPQAQ LEPVGLEVFL 151 200 BACU017711/1-201 ---------- -DKYLTDGGD PNVHDK---L HRTAWHCACP KGHSQLVNKL bmy_06881T0/1-589 KAAAENQEAL TEKYLTDGGD PNAHDKVARL HRTAWHWACP KGHSQLVNKL ENSTTRP00000007456/1-284 QAAAENQEAL TDKYLTDGGD PSAHDK---L HRTAWHWTCP KGHSQLVNKL ENSP00000321679/1-305 KAAAENQEYL IDKYLTDGGD PNAHDK---L HRTALHWACL KGHSQLVNKL ENSBTAP00000014398/1-305 KAAAENQEAL IDKYLADGGD PNAHDK---L HRTALHWACL KGHCELVNKL 201 250 BACU017711/1-201 LEAGATVDAR DL-------- ---------- ---------- --LDGPPVFW bmy_06881T0/1-589 LEAGATVDAR DLVRTREGPS PRQTPPPGIS AGQGYSGAFV LQLDGTPVSW ENSTTRP00000007456/1-284 LEAGATVDAR DL-------- ---------- ---------- --PDRTPVFW ENSP00000321679/1-305 LVAGATVDAR DL-------- ---------- ---------- --LDRTPVFW ENSBTAP00000014398/1-305 LEAGAAVDTR DL-------- ---------- ---------- --LDRTPVFW 251 300 BACU017711/1-201 ACRRGHLDIL KQLLNRGAQV NARDQGRAQA AGWPDALPGV GTRPCQLGVT bmy_06881T0/1-589 ACRGGHLDIL KQLLNRGAQ- ---------- ---------I WRTP------ ENSTTRP00000007456/1-284 ACRGGHLDIL KQLLNRGARV NARDQ----- ---------I WGTP------ ENSP00000321679/1-305 ACRGGHLVIL KQLLNQGARV NARDK----- ---------I GSTP------ ENSBTAP00000014398/1-305 ACRRGHLDIL KQLLNWGAQV NTRDK----- ---------I WSTP------ 301 350 BACU017711/1-201 LTLTAPVDLE HAPARGRAHR DCLERLVACG ARADA----- ---------- bmy_06881T0/1-589 --LHVAVRTA TAWSASSPAG PALTHRTSGG EEDDAPISTG RGHGSTRGGA ENSTTRP00000007456/1-284 --LHMAV--- H--------R DCLQHLVTCR ACADA----- ---------- ENSP00000321679/1-305 --LHVAVRTR H--------P DCLEHLIECG AHLNA----- ---------- ENSBTAP00000014398/1-305 --LHVAVRTG H--------C DCLEHLIACG ARIDA----- ---------- 351 400 BACU017711/1-201 ----QDKEGD TAL-----HE A--------- -VQPGHYRAM EVLLLY---- bmy_06881T0/1-589 ARPLQSHEGA AALRGRAGHE NAVSASEQAG RAAPGRRAGT HPASLSPGFS ENSTTRP00000007456/1-284 ----QDKEGD TAL-----HE A--------- -VQPGHCRAL KVLLLS---- ENSP00000321679/1-305 ----QDKEGD TAL-----HE A--------- -VRHGSYKAM KLLLLY---- ENSBTAP00000014398/1-305 ----QDKEGD TAL-----HE A--------- -VRHGRYRAM KLLLLY---- 401 450 BACU017711/1-201 -----GAGLG V--------- ---------- ---------- ---------- bmy_06881T0/1-589 DPSVAGPGLA VGHPGSTAGP RGAPPYPVPP TADPRGHSQP PFHPVTSAPC ENSTTRP00000007456/1-284 -----GAGLG V--------- ---------- ---------- ---------- ENSP00000321679/1-305 -----GAELG V--------- ---------- ---------- ---------- ENSBTAP00000014398/1-305 -----GAGLG V--------- ---------- ---------- ---------- 451 500 BACU017711/1-201 ---------- ---------- ---------- ---------- ------RPQA bmy_06881T0/1-589 HSRVSPAWSS LGHDSPLRAD SAPPGSPVRP GAAPRLAGGR AASLASRPRL ENSTTRP00000007456/1-284 ---------- ---------- ---------- ---------- -------NAA ENSP00000321679/1-305 ---------- ---------- ---------- ---------- ------RNAA ENSBTAP00000014398/1-305 ---------- ---------- ---------- ---------- ------RNAA 501 550 BACU017711/1-201 PRTQT----- ---------- ---------- ---------- ---------- bmy_06881T0/1-589 SRSPPGRELG ADAEDPGVAG GCRKQSGSRR GAAEERGDRG QSSTGTASSS ENSTTRP00000007456/1-284 SVTPV----- ---------- ---------- ---------- ---------- ENSP00000321679/1-305 SVTPVQ---- ---------- ---------- ---------- ---------- ENSBTAP00000014398/1-305 SVTPVQ---- ---------- ---------- ---------- ---------- 551 600 BACU017711/1-201 -------LGP -W-------- ---------- ------EKQA FKSMDKTLPI bmy_06881T0/1-589 LGPVPGLLGA HWSPVQEAAG LCPPPGPSCH QVVTRTERGL LGSQPALAAL ENSTTRP00000007456/1-284 -------LAQ DW-------- ---------- ------QSRI WEALQAHVVH ENSP00000321679/1-305 -------LAR DW-------- ---------- ------QRGI REALQAHVAH ENSBTAP00000014398/1-305 -------LAR DW-------- ---------- ------QRGI QEALQAHVRH 601 650 BACU017711/1-201 ---------- ---------- ------- bmy_06881T0/1-589 AALRAPDSRT APPGAAGCPP RNPTTKA ENSTTRP00000007456/1-284 PHTRCR---- ---------- ------- ENSP00000321679/1-305 PRTRC----- ---------- ------- ENSBTAP00000014398/1-305 TRTRC----- ---------- -------