KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:52:54 2014  Check: 00 ..

 Name: ENSP00000377170/1-183     Len:    183  Check:  4422  Weight:  1.00
 Name: ENSBTAP00000014400/1-183  Len:    183  Check:  7129  Weight:  1.00
 Name: ENSTTRP00000007458/1-183  Len:    183  Check:  4745  Weight:  1.00
 Name: bmy_06880T0/1-137         Len:    183  Check:  8834  Weight:  1.00
 Name: BACU017710/1-150          Len:    183  Check:  9896  Weight:  1.00

//


                          1                                                   50
ENSP00000377170/1-183     MATPRPCADG PCCSHPSAVL GVQQTLEEMD FERGIWSAAL NGDLGRVKHL 
ENSBTAP00000014400/1-183  MAAPRPCADG PCCSHPSAAP GVQQTLDEMD FERGIWSAAL NGDLGRVKYL 
ENSTTRP00000007458/1-183  MAVPRPCAEG PCCSRPSAAP GVQQTLDEMD FERGIWSAAL NGDLGRVKYL 
bmy_06880T0/1-137         MAVSRPCAEG PCCSRPSAAP GVQQTLDEMD FER------- ---------- 
BACU017710/1-150          ---------- --GIWSAA-- ---------- ---------L NGDLGRVKYL 


                          51                                                 100
ENSP00000377170/1-183     IQKAEDPSQP DSAGYTALHY ASRNGHYAVC QFLLESGAKC DAQTHGGATA 
ENSBTAP00000014400/1-183  IQKAVDPSQP DSAGYTALHY ASRNGHYAVC QFLLESGAKC DAQTHGGATA 
ENSTTRP00000007458/1-183  IQKAADPSQP DSAGYTALHY ASRNGHYAVC QFLLESGAKC DAQTHGGATA 
bmy_06880T0/1-137         ----ADPSQP DSAGYTAL-- ---------- ---------- ---THGGATA 
BACU017710/1-150          IQKAADPSQP DSAGYTALHY ASRNGHYAVC QFLLESGAKC DAQTHGGATA 


                          101                                                150
ENSP00000377170/1-183     LHRASYCGHT EIARLLLSHG SNPRVVDDDG MTSLHKAAER GHGDICSLLL 
ENSBTAP00000014400/1-183  LHRASYCGHT DIARLLLSHG SNPRLVDADG MTSLHKAAEK GHVDICSLLL 
ENSTTRP00000007458/1-183  LHRASYCGHT DIARLLLSHG SNPRLVDDDG MTSLHKAAEK GHVDICSLLL 
bmy_06880T0/1-137         LHRASYCGHT DIARLLLSHG SNPRLVDDDG MTSLHKAAEK GHVDICSLLL 
BACU017710/1-150          LHRASYCGHT DIARLLLSHG SNPRLVDEDG MTSLHKAAEK GHVDICSLLL 


                          151                                                200
ENSP00000377170/1-183     QHSPALKAIR DRKARLACDL LPCNSDLRDL LSS 
ENSBTAP00000014400/1-183  QHSPALKAVR DRKSRLACDL LPGNSDLRDL LAS 
ENSTTRP00000007458/1-183  QHSPALKAIR DRKARLACDL LPCNSDLRDL LAS 
bmy_06880T0/1-137         QHSPALKAVR DRKARLACDL LPCNSDLRDL LAS 
BACU017710/1-150          QHSPALKAVR DRKARLACDL LPCNSDLRDL LAS