KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:52:57 2014 Check: 00 .. Name: ENSBTAP00000014417/1-1383 Len: 1433 Check: 3256 Weight: 1.00 Name: ENSTTRP00000014404/1-1263 Len: 1433 Check: 3529 Weight: 1.00 Name: bmy_15445T0/1-741 Len: 1433 Check: 6555 Weight: 1.00 Name: BACU001889/1-1191 Len: 1433 Check: 8059 Weight: 1.00 // 1 50 ENSBTAP00000014417/1-1383 MTRRRMYWVP RSSGGLVNLG LDVDDDMVSG LSYKTITVED SPWRQQVREP ENSTTRP00000014404/1-1263 MTRRKIYWVP RSSGDLVNLG LDIDDDMVSG LSYKTFSLED SPWSQQVREP bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 MGTSPTLWCP FWPWTLDPAG ---------- -KVKTFTLED SPWSQQVREP 51 100 ENSBTAP00000014417/1-1383 EAPGRGKYDA AWKTMIPFRP KPKFPEPQPL DDAGLFSYLT LSWLNPLMVR ENSTTRP00000014404/1-1263 EAPEMGKYDA AWRTMIPFRP KPKFPAPKPL DDAGLFSYLT LSWLSPVMIQ bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 EAPEMGKYDA ARRTMIPFRP KPKFPAPQPP DDAGLFSYLT LSWFSPVTIQ 101 150 ENSBTAP00000014417/1-1383 GLRRSLDEDN IPQLSVHDAA DKNAKRLRLL WEEEVSRHGI DKASVLRVML ENSTTRP00000014404/1-1263 GLRKRLDENT ---LSVHDAS AQNAQRLRLL WEEEVSRHGI DKASMLRVML bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 DLRKRLDENT IPQLSVHDAS AKNAKRLRLL W-EEVSRHGT DKASVLRVML 151 200 ENSBTAP00000014417/1-1383 RFQRTRLIFD TIVSCCFSIT SVLGPILLMP KILEYAKNPS RDVAYGVGLC ENSTTRP00000014404/1-1263 RFQ------- ---DCCFSAA SVLGPMLVIP KILEYTEEWL GNIPYGVGLC bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 RFQRTRVIFN TLLGSCFSAA SVLGPMLVIP KILEYTEEWL GNIAYGVGLC 201 250 ENSBTAP00000014417/1-1383 LALFFTECLK SLSMCSCWVI NQRTGVRFRA AVFSFAFEKL MQFKSLTHIT ENSTTRP00000014404/1-1263 FPLFLTECLK SLSMCLCWVI NQHTGNRFRT AVFPFAFEKL IQLKSLTHIT bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 FALFLSECLK SLSMCSCWVV NQHTGIRFRT AVFSFALEKL IQLKSLTHIT 251 300 ENSBTAP00000014417/1-1383 VGEAIGFFTT DVNCLYEGVY YGPLAVLTFL LLISCSITSC LVLGPIALIA ENSTTRP00000014404/1-1263 MGE------- ---------- ---------- ---------- ---------- bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 MGEAISFFTS DINCLFEGVC YGPLALLTCL LLIACSITSC LTLGPTALIA 301 350 ENSBTAP00000014417/1-1383 MLCYLLFLPL QAFLTRKLVE SQKHTSEVSD QRIRMTSEVL TSIKLIKMYT ENSTTRP00000014404/1-1263 ---------- ---------- ---------- ---------- -------MYT bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 VLCYLLILPL EIFLARKVVK IQNHASEVSD QYIRMTSEVL TCIKLIKMYT 351 400 ENSBTAP00000014417/1-1383 WEKPFTKVIK DLRKKETKLL EKCGLIQSLT TVILFLAPSL SAVLLFLTHV ENSTTRP00000014404/1-1263 WEKQF-KIIK DLRRKEMELL EKCGFILSLT TITLFTASSM ASVVTFLVHT bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 WEKPFSKIIK DLRRKEVELL EKCGFIRSLT TATLFTASPM ALVVTFLIHT 401 450 ENSBTAP00000014417/1-1383 GLRLKLTISV AFTTVATLGP MRLSVFLTPF AVKGLTNSKS AADRFKKFFL ENSTTRP00000014404/1-1263 GLQLKLTASV AFTTVATLNP MRLSVVLLPF TVKGLTMSRS ASERFKKFFL bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 GLRLKLTASV AFTTVANLNP MRLSVVLVPF TVKGLAMSRS ASERFNKFFL 451 500 ENSBTAP00000014417/1-1383 QESPVIYVKE LEDPRKPVVL EEATLSWRKT CPGIINGALE LEKNRYTPEG ENSTTRP00000014404/1-1263 QESPVIYVKA SKDPSKTVVW G-ATLSWRKT CPGIVNGALE LEKNGHTPEG bmy_15445T0/1-741 ---------- ---------- ---------- ---------- ---------- BACU001889/1-1191 QESPVIYVKA LKDPSKTVVW GEVTLSWRKT CPRIVNGALE LEKNGHTPEG 501 550 ENSBTAP00000014417/1-1383 MTRAQPPLSG LEPEAQGDTR GPELRKINLV LSKGTMLGVC GNTGSGKSSL ENSTTRP00000014404/1-1263 MTRAQPPLGA LRPEDKG-TR APELHKINLV VSKGTMLGVC GNTGSGKSSL bmy_15445T0/1-741 ---------- ---------- ---------- -----MLGVC GNTGNGKSSL BACU001889/1-1191 MTRAQPPLGA LRPEDKGDTR APELHKVNLV VSKGTMLGVC GSTGNGKSSL 551 600 ENSBTAP00000014417/1-1383 LSAILGQMHL LEGSVGVHGS L-------AY VPQQAWIIKG SVRENI---- ENSTTRP00000014404/1-1263 LSAILGETHL LEGSVRVHGS L-------VY VPPQAWII-G SIRERI---- bmy_15445T0/1-741 LSAILGETH- -SAADALAGG LGEGARRPGL CPPAGLDHGG SIRGNI---- BACU001889/1-1191 LSDILGETHL LEGSVRVHGG L-------AY VPPQAWIMGE AFGETFSREA 601 650 ENSBTAP00000014417/1-1383 ---------- ---------- ------LMGS QYDEAWYLQV LHCCSLNHDL ENSTTRP00000014404/1-1263 ---------- ---------- ------LIGS QYDKARYLQV LHCCSLNHDL bmy_15445T0/1-741 ---------- ---------- ------LMGS QYDKAQYLQG LHCCSLNHDL BACU001889/1-1191 STTRPVLRGT DMRVYKSVIS SQLSCGLLNI RSNADWYLQG LRSCSLNHDL 651 700 ENSBTAP00000014417/1-1383 EILPFGDMTE IGERGLNLSG GQKQRISLAR AVYSDRELYL LDDPLSAVDA ENSTTRP00000014404/1-1263 EILPFGDMTE IREWGLNLSG GQKQRISLAR AVYSDRELHL LDDPLSAMDT bmy_15445T0/1-741 EILPFGDMTE IGERGLNLSG WQKQRISLAR AVYSDHELYL LDDPLSAMDT BACU001889/1-1191 EILPFGDTTE ---------G GQKQRINLAR AVYSDRELYL LDDPLSAVDT 701 750 ENSBTAP00000014417/1-1383 HVGKHIFEEC FKKVLRRKTV ILVTHQLQYL EFCDQIILFE DGKICEKGIH ENSTTRP00000014404/1-1263 QVGKHIFEEC INKALWGKTV ALVTHQQPYL EFCDQTILLE DGKICEKGIH bmy_15445T0/1-741 HVGKHTFEEC INKALRGKTV ILVTHQL--- ---------- ---------- BACU001889/1-1191 HVGKHTFEEC INKALRGKTV ILLAHQL--- ---------- ---------- 751 800 ENSBTAP00000014417/1-1383 SELIQKRGRY AQLIQKMHEK ATQGVLQGVA KTEEDLQLEG QAQTACQEEL ENSTTRP00000014404/1-1263 SELIQKKGRY AQLIQKMHGE AIQGVLQGIA KAAEELQVEG RAQTTCPEER bmy_15445T0/1-741 ---------- ---------- --QGVLQGIA KAAEELQVEG QAQTTCPEEL BACU001889/1-1191 ---------- ---------- --QGMLQGIA KAAEELQVEG QAQTTCPEEL 801 850 ENSBTAP00000014417/1-1383 LSENADPVLE NQLSQKEKME EGSLKWTVYH HYIQAGGGYL ICSMIFLLMV ENSTTRP00000014404/1-1263 LNENA--VLE NQLTQKEKME KETLXXXXXX XXXXXXXGYL VSAMVFFLLV bmy_15445T0/1-741 LNXNA--VLE NQLTQKEKME KESLKWSIYH HYIQAAGGYL VSAMVFLLLA BACU001889/1-1191 LNENA----- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000014417/1-1383 MLAFFPVFSF WWLSYWLGQG SGNNSSQESN WTTADPGDIL DNPQLPFYQL ENSTTRP00000014404/1-1263 VTAFLTMFNL WWLSYWLEQG SGTDSSQESN RTTADPGDVL DNPQLPFCQL bmy_15445T0/1-741 MMVFFTMFNL WWLSYWLEQG SG-------- ---------- ----LPFYQL BACU001889/1-1191 ---------- ---------- ---------- ---------- ---------- 901 950 ENSBTAP00000014417/1-1383 VFGLSGLLAI LLGICLSLVF TKVMGKASTA LHNKLFNKSA PLMFAAPYLL ENSTTRP00000014404/1-1263 VYGLNVLFAV CMGFCTSAAF TKVVRKAPTA LHNKLFNK-- --VFRCPMCF bmy_15445T0/1-741 VYGLSALFTV CMGICTLAAF TKVMRKAPTA LHNKLFNK-- --VSRCPMCF BACU001889/1-1191 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000014417/1-1383 QDRVCVGTRA RC--KGLESL DNLGTGFSRQ GASLSLVTRV PQDSSVGPLP ENSTTRP00000014404/1-1263 FDTTPAGRLL NCFAGDLHEL DQFLPTVAEQ SLLLILVVTT LLMIVS--SP bmy_15445T0/1-741 FDTTPTGRLL NCFAGDLHEL DQFLPTVAEQ SLLLILVVTT ILMIVSVVSP BACU001889/1-1191 ------GRLL NFFAGDLREL DQFLPTVAEQ SLLLILVVTT ILMIVSAASP 1001 1050 ENSBTAP00000014417/1-1383 RVLEGSGVCL YICVSEKMRE RRVCPTMDNL PRYLRKPLVL VSAQSLGLSS ENSTTRP00000014404/1-1263 SVLLMGVVTL IVCLVYFIMF KRAINAFKSL ENYSSPLFSH ILTTLHSLSS bmy_15445T0/1-741 SVLLMGVVIL IVCLVYFRMF KRAINAFKSL ENYSSPLFSH ILTTLHGLSS BACU001889/1-1191 SVLLTGVVIL IVCLVYFRMF KRAINAFKSL ENYSSPLLSH ILTTLYGLSS 1051 1100 ENSBTAP00000014417/1-1383 AN--GRAGTM VHSIFQLTEH CKGYMHYYLS QE--VALTAA LVANVWILLI ENSTTRP00000014404/1-1263 IHVYGETEDS ISKFKRLTDT QNNYLLMFLS SMRWVALKLE LMTNMVTLMV bmy_15445T0/1-741 IHVYGETEDS ISK------- -------FLS STRWVALKLE LMTNMVTLMV BACU001889/1-1191 IHVYGETEDS ISKFKRLTVA QNNYLLRFLS STRWVALKLE LMTNMVTLMV 1101 1150 ENSBTAP00000014417/1-1383 SIGVVAWHLS ATPFKGSCLD TSPLFQLASN FQASVRIGSE AEACLTAVER ENSTTRP00000014404/1-1263 AL-LMFFGVS SAPF-YKAVA ISLVLQLVSN FQACIRISSE TEAYFTAVER bmy_15445T0/1-741 AL-FTFFGVS SAPYSYKAMA ISLVLQLASN FQACVRISSE TEAYFTAVER BACU001889/1-1191 AL-FTFFGVS SAPYSYKAMA ISLVLQLASN FQACVRISSE TEAYFTAVER 1151 1200 ENSBTAP00000014417/1-1383 ILQYMKFENE MCVPEAPLHI EGASCPRGWP QHGEITFQDY QMKYRDNTPI ENSTTRP00000014404/1-1263 MLQYMM---- MCVSEAPLHI EGTNCPHGWL QHGEITFQDY QMKYRDNTPI bmy_15445T0/1-741 MLQYMK---- MCVSEAPLHI EGTNCPHGWP QHGEITFQDY QMKYRDNTPL BACU001889/1-1191 MLQYMR---- MCVSEAALHI EGTNCPYGWL QHGEITFQDY QMKYRDNTPI 1201 1250 ENSBTAP00000014417/1-1383 VLNGLSLTIH SQEVVGIVGR TGSGKSSLGV ALFRLVEPAG GRILIDGVDI ENSTTRP00000014404/1-1263 VLYSLNLTIH GQEVVGIVGR MGSGKSSLGV ALFRLGVALA GRILIDGVDI bmy_15445T0/1-741 VLYGLNLTIH GQEVVGIVGR TGSGKSSLGV ALFRLVEPAA GRILIDSVDI BACU001889/1-1191 VLYGLNLTIR GQEVVGIVGR TGSGKSSLGV ALFRLVEPAA GRILIDGVDI 1251 1300 ENSBTAP00000014417/1-1383 CSLSLEDLRS KFSVIPQDPV LLSGTIRFNL DPFHRCTDEQ IWDALKRTFL ENSTTRP00000014404/1-1263 CSLSLEHLLS KFSVIPQDPV LLSGTI-FNL DPFDHRTDEQ IWDALERTSL bmy_15445T0/1-741 CSLGLEHLRS KFLVIPQDPV LLSGTI---- ---------- ------RSHF BACU001889/1-1191 CSLGLEHLRS KFSVIPQDPV LPSGTIRFNL DPFDHCTDEQ IWDALERTSL 1301 1350 ENSBTAP00000014417/1-1383 NKTISKLPQG LQAEVTENGS NFSVGERQLL CIARALLRSS KIVLIDEATA ENSTTRP00000014404/1-1263 SEMISKLPQG LQAEVVENGS NFSVG-WQLL CITRALLRSS KIILIDEAPA bmy_15445T0/1-741 PAKV------ LGELVVDPG- ---LGQRRL- --PSPPFRIH HIILIDEATA BACU001889/1-1191 SEMV------ LGELVVDPG- ---LGQRRL- --PSPPFRTH HIILIDEATA 1351 1400 ENSBTAP00000014417/1-1383 SLDLEMDILI QHVIRESFRG CTVLIIAHRV TTILNCDRIL VMGNGKVVEF ENSTTRP00000014404/1-1263 STDLETDTLI QRTTREGIRG CTALTIAHRV TTILNCDRIL VMSNGKVVEF bmy_15445T0/1-741 SIDLEXDTLI QRTIREGIWG CPALIITHRV TTILNCDRIL VMSNGKVVEF BACU001889/1-1191 SIDVETDTLT QRTICEGIRG CTALIIAHRV TTILNCDRIL VMSNGKVVEF 1401 1450 ENSBTAP00000014417/1-1383 DKPEVLQRKP GSTFAALLAI ASSSMS---- --- ENSTTRP00000014404/1-1263 DRPEVLQKKP GSMSAALLAT ASSSLSS--- --- bmy_15445T0/1-741 DRPEVLQKKP GSMFAALLAT ASSSLSSGEG RPQ BACU001889/1-1191 DRPEVLQKKP GSMFAALLAT ASSSLSSGEG RPR