KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:04 2014 Check: 00 .. Name: ENSP00000268184/1-619 Len: 691 Check: 503 Weight: 1.00 Name: bmy_10345T0/1-516 Len: 691 Check: 4827 Weight: 1.00 Name: ENSBTAP00000014501/1-549 Len: 691 Check: 1979 Weight: 1.00 Name: BACU016068/1-511 Len: 691 Check: 8890 Weight: 1.00 Name: ENSTTRP00000004753/1-575 Len: 691 Check: 6881 Weight: 1.00 // 1 50 ENSP00000268184/1-619 MAASPGSGSA NPRKFSEKIA LHTQRQAEET RAFEQLMTDL TLSRVQFQKL bmy_10345T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014501/1-549 ---------- ---------- ---------- ---------- ---------- BACU016068/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004753/1-575 ---------- ---------- ---------- ---------- ----VQFQKL 51 100 ENSP00000268184/1-619 QQLRLTQYHG GSLPNVSQLR SSASEFQPSF HQADNVRGTR HHGLVERPSR bmy_10345T0/1-516 ---------- ---------- --SFSLQPAF HPADSVRGTR HHGLVERPSR ENSBTAP00000014501/1-549 ---------- ---------- SSSFSLQPVF HPADSVRGTR HHGLVERPSR BACU016068/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004753/1-575 QQLRLTQYHG GSLPNVSQLR SSASEFQPAF HPADSVRGTR HHGLVERPSR 101 150 ENSP00000268184/1-619 NRFHPLHRRS GDKPGRQFDG SAFGANYSSQ PLDESWPRQQ PPWKDEKHPG bmy_10345T0/1-516 TRFHPLHRRS GDKPGRQFDG STFGANYASQ PLDESWPRQQ PPWKEEKHPG ENSBTAP00000014501/1-549 TRFHPLHRRS GDKPGRQFDG STLGANYASQ PLDESWPRQQ PPWKEEKHPG BACU016068/1-511 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004753/1-575 TRFHPLHRRS GDKPGRQFDG STFGANYASQ PLDESWPRQQ PPWKEEKHPG 151 200 ENSP00000268184/1-619 FRLTSALNRT NSDSALHTSA LSTKPQDPYG GGGQSAWPAP YMGFCDGENN bmy_10345T0/1-516 FRLTSALNRT NSDSALHTSA LSTKPQDPYG GGGQSAWPAS YMGFCDGEND ENSBTAP00000014501/1-549 FRLTSALNRT NSDSALHTSA LSTKPQDPYG GGGQSAWPAS YVGFCDGEND BACU016068/1-511 -RLSPPPIRT NSDSALHTSA LSTKPQDPYG GGGQSAWPAS YMGFCDGEND ENSTTRP00000004753/1-575 FRLTSALNRT NSDSALHTSA LSTKPQDPYG GGGQSAWPAS YMGFCDGEND 201 250 ENSP00000268184/1-619 GHGEVASFPG PLKEENLLNV PKPLPKQLWE TKEIQSLSGR PRSCDVGGGN bmy_10345T0/1-516 VHGEVVSFPS PLKEENLLHV PKPLPKQLWE TKEIQSLSGR PRSCDVRGGS ENSBTAP00000014501/1-549 VHGEVVSFPG PLREENLLNV PKPLPKQLWE TKEIQSLSGR PRSCDVGGGS BACU016068/1-511 VHGEVVSFPS PLKEENLLNV PKPLPKQLWE TKEIQSLSGR PRSCDVRGGS ENSTTRP00000004753/1-575 VHGEVVSFPS PLKEENLLNI PKPLPKQLWE TKEIQSLSGR PRSCDVRGGS 251 300 ENSP00000268184/1-619 AFPHNGQNLG LSPFLGTLNT GGSLPDLTNL HYSTPLPASL DTTDHHFGSM bmy_10345T0/1-516 AFPHSGQNMG LSPFLGTLNT GGSLPDLTNL HYSAPLPTSL DTSDHLFGSM ENSBTAP00000014501/1-549 TFPHNGQNMG LSPFLGTLNT GGSLPDLTNL HYSAPLPASL DTGDHLFGSM BACU016068/1-511 AFPHSGQNMG LSPFLGTLNT GGSLPDLTNL HYSAPLPTSL DTSDHLFGSM ENSTTRP00000004753/1-575 TFPHSGQNMG LSPFLGTLNT GGSLPDLTNL HYSVPLPASL DTSDHLFGSM 301 350 ENSP00000268184/1-619 SVGNSVNNIP AAMTHLGIRS SSGLQSSRSN PSIQATLNKT VLSSSLNNHP bmy_10345T0/1-516 SVGNSVGNLP AAMTHLGIRS SSGLQSSRSN PSIQATLNKT ALSSSLNSRP ENSBTAP00000014501/1-549 SVGNSVGNLP AAMTHLGIRG SSGLQSSRSN PSIQATLNKT VLSSSLNSRP BACU016068/1-511 SVGNSVGNLP AAMTHLGIRS SSGLQSSRSN PSIQATLNKT ALSSSLNSRP ENSTTRP00000004753/1-575 SVGNSVGNLP AAMTHLGIRS SSGLQSSRSN PSIQATLNKT ALSSSLNSRP 351 400 ENSP00000268184/1-619 QTSVPNASAL HPSLRLFSLS NPSLSTTNLS GPSRRRQPPV SPLTLSPGPE bmy_10345T0/1-516 QASAPNASAL HPSLRLFSLS NPSLSTTNLS GPSRRRQPPV SPLTLSPGPE ENSBTAP00000014501/1-549 EASAASASAL HPSLRLFSLS NPSLSTTSLS GPPRRRQPPV SPLTLSPGPE BACU016068/1-511 QASAPNASAL HPSLRLFSLS NPSLSTTNLS GPSRRRQPPV SPLTLSPGPE ENSTTRP00000004753/1-575 QASAPNASAL HSSLRLFSLS NPSLSTTNLS GPSRRRQPPV SPLTLSPGPE 401 450 ENSP00000268184/1-619 AHQGFSRQLS STSPLAPYPT SQMVS----- ---------- --SDRSQLSF bmy_10345T0/1-516 AHQSFSRQLS STSPLKPYPA SQMVS----- ---------- --SDRSPLSF ENSBTAP00000014501/1-549 AHQGFSRQLS STSPLHPYPA SQMVS----- ---------- --SDRSPLSF BACU016068/1-511 AHQSFSRQLS STSPLKPYPA SQTIEIVVEW KMFCGEVRFE IYFEGTELGF ENSTTRP00000004753/1-575 AHQSFSRQLS STSPLKPYPA SQMVS----- ---------- --SDRSPLSF 451 500 ENSP00000268184/1-619 LP-----TEA QAQVSPPPPY PAPQ------ ---------- -----ELTQP bmy_10345T0/1-516 LP-----TEA QAQVSPPPPY PTPQ------ ---------- -----DLPQP ENSBTAP00000014501/1-549 LP-----TEA QAQVSPPPPY PAAH------ ---------- -----DLPQP BACU016068/1-511 SEHSIDYQEA QAQVSPPPPY PTPHDPPPPL LQQPHAQEPA AQQPQDLPQP ENSTTRP00000004753/1-575 LP-----TEA QAQVSPPPPY PTPQ------ ---------- -----DLPQP 501 550 ENSP00000268184/1-619 LLQQPRAPEA PAQQPQAASS LPQSDFQLLP AQ-------- ---------- bmy_10345T0/1-516 LLQQPHAQEP AAQEPQAAPS LPQSDFQLLT AQVSPTGNTR RRERLGRPEF ENSBTAP00000014501/1-549 LLQQPHAQEP PAQQPQAASS LSQSDFPLLT AQ-------- ---------- BACU016068/1-511 LLQQPHAQEP AAQQPQAAPS LPQSDFQLLT AQ-------- ---------- ENSTTRP00000004753/1-575 LLQQPHAQEP SAQQPQAAPS LPQSDLQLLT AQ-------- ---------- 551 600 ENSP00000268184/1-619 ---------- -GSSLTNFFP DVGFDQQSMR PGPAFPQQVP LVQQGSRELQ bmy_10345T0/1-516 QAKWSPPSFL KGSSLTNFFP DVSFDQQSMR PGPAFTQQVS -GRRGLPLPR ENSBTAP00000014501/1-549 ---------- -GSSLTSFFP DVSFDQQSMR PGPAFTQQVP PVQQGPREPQ BACU016068/1-511 ---------- -GSSLTNFFP DVSFDQQSMR PGPAFTQQVP LVQQGPREPQ ENSTTRP00000004753/1-575 ---------- -GSSLTSFFP DVSFEQQSMR PGPAFTQQVP LVQQCPREPQ 601 650 ENSP00000268184/1-619 DSFHLRPSPY SNCGSLPNTI LPEDSSTSLF KDLNSALAGL PEVSLNVDTP bmy_10345T0/1-516 S--------- RNCHSQASSV RGTHTKQTRY ---CTSLTS- ---------- ENSBTAP00000014501/1-549 DSFHLRPNLY SNCGNFPNTV LTEDSSTSLF KDLSSALGGM PEVSLSVDTP BACU016068/1-511 DSFHLRPNLY SNCGNFPNTI LTEDSSTSLF KDLGSALAGM PEVSLNVDTP ENSTTRP00000004753/1-575 DSFHLRPNLY SNCGNFPNTI LTEDSSTSLF KDLGSALAGM PEVNLNVDTP 651 700 ENSP00000268184/1-619 FPLEEELQIE PLSLDGLNML SDSSMGLLDP SVEETFRADR L bmy_10345T0/1-516 ---------- ---------- -----GVLSG ---------- - ENSBTAP00000014501/1-549 FPLEEELQIE PLSLDGLNML SDSSMGLLDP SVEETFRADR L BACU016068/1-511 FPLEEELQIE PLSLDGLSML SDSSLGLLDP SIEETFRADR L ENSTTRP00000004753/1-575 FPLEEELQIE PLSLDGLSML SDSSLGLLDP SIEEALRADR L