KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:05 2014 Check: 00 .. Name: ENSTTRP00000009994/1-1362 Len: 1385 Check: 6916 Weight: 1.00 Name: ENSBTAP00000014505/1-1375 Len: 1385 Check: 3205 Weight: 1.00 Name: ENSP00000339957/1-1287 Len: 1385 Check: 2214 Weight: 1.00 Name: bmy_04022T0/1-1229 Len: 1385 Check: 9184 Weight: 1.00 Name: BACU005651/1-1135 Len: 1385 Check: 5598 Weight: 1.00 // 1 50 ENSTTRP00000009994/1-1362 ---------- ---DVFWRCR QNIFDEMKKK FLQXXXXXXX XXXXXXXXXX ENSBTAP00000014505/1-1375 KEGGEKQNLY RKSDVFWRCR QNIFDEMKKK FLQIENAAEE PRVLCIIQDT ENSP00000339957/1-1287 MVPGEENQLV PKE------- ---------- ---------- ---------- bmy_04022T0/1-1229 MVPGEENQLV PKE------- ---------- ---------- ---------- BACU005651/1-1135 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009994/1-1362 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014505/1-1375 TNSKTVNERI TLNLPASTPL RKLFEDVANK VGYINGTFDL VWGNGINTAD ENSP00000339957/1-1287 ---------- ---------- ---------- ---------- ---------- bmy_04022T0/1-1229 ---------- ---------- ---------- ---------- ---------- BACU005651/1-1135 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009994/1-1362 XAPLDHTSDK SLLDANFEPG KKNFLHLTDK DGEQPQIL-L EDSSAGDDSV ENSBTAP00000014505/1-1375 MAPLDHTSDK SLLDANFEPG KKNFLHLTDK DGEQPQIL-L EDSSAGDDSV ENSP00000339957/1-1287 -APLDHTSDK SLLDANFEPG KKNFLHLTDK DGEQPQIL-L EDSSAGEDSV bmy_04022T0/1-1229 -V-------- ---------- --------EN AAEEPRVLCI IQDTTNSKTV BACU005651/1-1135 ---------- ---------- ---------- ---------M EDSSAGDDSV 151 200 ENSTTRP00000009994/1-1362 HDKFIGPLPR EGSVGSTSDY VSQSYSYSSI LNKSETGYVG LVNQAMTCYL ENSBTAP00000014505/1-1375 HDKFIGPLPR EGSVGSTSDY VSQSYSYSSI LNKSETGYVG LVNQAMTCYL ENSP00000339957/1-1287 HDRFIGPLPR EGSGGSTSDY VSQSYSYSSI LNKSETGYVG LVNQAMTCYL bmy_04022T0/1-1229 NERITLNLPA STPLRKLFED VANKVGY--I NGTFDLVWGN GINSADMAPL BACU005651/1-1135 HDKFIGPLPR EGSVGSTSDY VSQSYSYSSI LNKSET---- ---------- 201 250 ENSTTRP00000009994/1-1362 NSLLQTLFMT PEFRNALYKW EFEESEEDPV TSIPYQLQRL FVLLQTSKKR ENSBTAP00000014505/1-1375 NSLLQTLFMT PEFRNALYKW EFEESEEDPV TSIPYQLQRL FVLLQTSKKR ENSP00000339957/1-1287 NSLLQTLFMT PEFRNALYKW EFEESEEDPV TSIPYQLQRL FVLLQTSKKR bmy_04022T0/1-1229 DHTSDKSLLD ANF------- ---------- ---------- ----EPGKKN BACU005651/1-1135 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000009994/1-1362 AIETTDVTRS FGWDSSEAWQ QHDVQELCRV MFDALEQKWK QTEQXXXXXX ENSBTAP00000014505/1-1375 AIETTDVTRS FGWDSSEAWQ QHDVQELCRV MFDALEQKWK QTEQADLINE ENSP00000339957/1-1287 AIETTDVTRS FGWDSSEAWQ QHDVQELCRV MFDALEQKWK QTEQADLINE bmy_04022T0/1-1229 FLHLTD---- -----KDAWQ QHDVQELCRV MFDALEQKWK QTEQADLINE BACU005651/1-1135 ---------- -------AWQ QHDVQELCRV MFDALEQKWK QTEQADLINE 301 350 ENSTTRP00000009994/1-1362 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ENSBTAP00000014505/1-1375 LYQGKLKDYV RCLECGYEGW RIDTYLDIPL VIRPYGSSQA FASV------ ENSP00000339957/1-1287 LYQGKLKDYV RCLECGYEGW RIDTYLDIPL VIRPYGSSQA FASV------ bmy_04022T0/1-1229 LYQGKLKDYV RCLECGYEGW RIDTYLDIPL VIRPYGSSQA FASVVCTFQL BACU005651/1-1135 LYQGKLKDYV RCLECGYEGW RIDTYLDIPL VIRPYGSSQA FASV------ 351 400 ENSTTRP00000009994/1-1362 ---EEALHAF IQPEILDGPN QYFCERCKKK CDARKGLRFL HFPYLLTLQL ENSBTAP00000014505/1-1375 ---EEALHAF IQPEILDGPN QYFCERCKKK CDARKGLRFL HFPYLLTLQL ENSP00000339957/1-1287 ---EEALHAF IQPEILDGPN QYFCERCKKK CDARKGLRFL HFPYLLTLQL bmy_04022T0/1-1229 TACEEALHAF IQPEILDGPN QYFCERCKKK CDARKGLRFL HFPYLLTLQL BACU005651/1-1135 ---EEALHAF IQPEILDGPN QYFCERCKKK CDARKGLRFL HFPYLLTLQL 401 450 ENSTTRP00000009994/1-1362 KRFDFDYTTM HRIKLNDRMT FPEELDMSTF IDVEDEKSPQ TESCTDSGAE ENSBTAP00000014505/1-1375 KRFDFDYTTM HRIKLNDRMT FPEELDMSTF IDVEDEKSPQ TESCTDSGAE ENSP00000339957/1-1287 KRFDFDYTTM HRIKLNDRMT FPEELDMSTF IDVEDEKSPQ TESCTDSGAE bmy_04022T0/1-1229 KRFDFDYTTM HRIKLNDRMT FPEELDMSTF IDVEDEKSPQ TESCTDSGAE BACU005651/1-1135 KRFDFDYTTM HRIKLNDRMT FPEELDMSTF IDVEDEKSPQ TESCTDSGAE 451 500 ENSTTRP00000009994/1-1362 NEGSCHSDQM SNDFSNDDGV DEGICLESNS GTEKIPKPGL EKNSLIYELF ENSBTAP00000014505/1-1375 NEGSCHSDQM SNDFSNDDGV DEGICLENNS GTEKIPKPGL EKNSLIYELF ENSP00000339957/1-1287 NEGSCHSDQM SNDFSNDDGV DEGICLETNS GTEKISKSGL EKNSLIYELF bmy_04022T0/1-1229 NEGSCHSDQM SNDFSNDDGV DEGICLESNS GTEKIPKPGL EKNSLIYELF BACU005651/1-1135 NEGSCHSDQM SNDFSNDDGV DEGICLESNS GTEKIPKPGL EKNSLIYELF 501 550 ENSTTRP00000009994/1-1362 SVMVHSGSAA GGHYYACIKS FSDEQWYSFN DQHVSRITQE DIKKTHGGSS ENSBTAP00000014505/1-1375 SVMVHSGSAA GGHYYACIKS FSDEQWYSFN DQHVSRITQE DIKKTHGGSS ENSP00000339957/1-1287 SVMVHSGSAA GGHYYACIKS FSDEQWYSFN DQHVSRITQE DIKKTHGGSS bmy_04022T0/1-1229 SVMVHSGSAA GGHYYACIKS FNDEQWYSFN DQHVSRITQE DIKKTHGGSS BACU005651/1-1135 SVMVHSGSAA GGHYYACIKS FNDEQWYSFN DQHVSRITQE DIKKTHGGSS 551 600 ENSTTRP00000009994/1-1362 GSRGYYSSAF ASSTNAYMLI YRLKDPARNA KFLEVDEYPE HIKNLVQRER ENSBTAP00000014505/1-1375 GSRGYYSSAF ASSTNAYMLI YRLKDPARNA KFLEVDEYPE HIKNLVQRER ENSP00000339957/1-1287 GSRGYYSSAF ASSTNAYMLI YRLKDPARNA KFLEVDEYPE HIKNLVQKER bmy_04022T0/1-1229 GSRGYYSSAF ASSTNAYMLI YRLKDPARNA KFLEVDEYPE HIKNLVQRER BACU005651/1-1135 GSRGYYSSAF ASSTNAYMLI YRLKDPARNA KFLEVDEYPE HIKNLVQRER 601 650 ENSTTRP00000009994/1-1362 ELEEQEKRQR EIERNTCKIK LFCLHPVKQV MMENKLEVHK DKTLKEAVEM ENSBTAP00000014505/1-1375 ELEEQEKRQR EIERNTCKIK LFCLHPVKQV MMENKLEVHK DKTLKEAVEM ENSP00000339957/1-1287 ELEEQEKRQR EIERNTCKIK LFCLHPTKQV MMENKLEVHK DKTLKEAVEM bmy_04022T0/1-1229 ELEEQEKRQR EIERNTCKIK LFCLHPVKQV MMENKLEVHK DKTLKEAVEM BACU005651/1-1135 ELEEQEKRQR EIERNTCKIK LFCLHPVKQV MMENKLEVHK DKTLKEAVEM 651 700 ENSTTRP00000009994/1-1362 AYKMMDLEEV IPMDCCRLVK YDEFHDYLER SYEGEEDTPM GLLLGGVKST ENSBTAP00000014505/1-1375 AYKMMDLEEV IPMDCCRLVK YDEFHDYLER SYEGEEDTPM GLLLGGVKST ENSP00000339957/1-1287 AYKMMDLEEV IPLDCCRLVK YDEFHDYLER SYEGEEDTPM GLLLGGVKST bmy_04022T0/1-1229 AYKMMDLEEV IPMDCCRLVK YDEFHDYLER SYEGEEDTPM GLLLGGVKST BACU005651/1-1135 AYKMMDLEEV IPMDCCRLVK YDEFHDYLER SYEGEEDTPM GLLLGGVKST 701 750 ENSTTRP00000009994/1-1362 YMFDLLLETR RPDQVFQSYK PGEVMVKVHV VDLKAESVAA PITVRAYLNQ ENSBTAP00000014505/1-1375 YMFDLLLETR RPDQVFQSYK PGEVMVKVHV VDLKAESVAA PITVRAYLNE ENSP00000339957/1-1287 YMFDLLLETR KPDQVFQSYK PGEVMVKVHV VDLKAESVAA PITVRAYLNQ bmy_04022T0/1-1229 YMFDLLLETR RPDQVFQSYK PGEVMVKVHV VDLKAESVAA PITVRAYLNQ BACU005651/1-1135 YMFDLLLETR RPDQVFQSYK PGEVMVKVHV VDLKAESVAA PITVRAYLNQ 751 800 ENSTTRP00000009994/1-1362 TVTEFKQLIS KAIYLPAETM RIVLERCYND LRLLTVPSKT LKAEGFFRSN ENSBTAP00000014505/1-1375 TVTEFKQLIS KAVHLPAETM RVVLERCYND LRLLTVPSKT LKNEGFFRSN ENSP00000339957/1-1287 TVTEFKQLIS KAIHLPAETM RIVLERCYND LRLLSVSSKT LKAEGFFRSN bmy_04022T0/1-1229 TVTEFKQLIS KAIYLPAETM RIVLERCYND LRLLTVPSKT LKAEGFFRSN BACU005651/1-1135 TVTEFKQLIS KAIYLPAETM RIVLERCYND LRLLTVPSKT LKAEGFFRSN 801 850 ENSTTRP00000009994/1-1362 KVFVESSETL DYQMAFTDSH LWKLLDRHAN TIRLFVLLPE QSPGSYSKRT ENSBTAP00000014505/1-1375 KVFVESSETL DYQMAFTDSH LWKLLDRHAN TIRLFVLLPE QSPGSFSKRT ENSP00000339957/1-1287 KVFVESSETL DYQMAFADSH LWKLLDRHAN TIRLFVLLPE QSPVSYSKRT bmy_04022T0/1-1229 KVFVESSETL DYQMAFTDSH LWKLLDRHAN TIRLFVLLPE QSPGSYSKRT BACU005651/1-1135 KVFVESSETL DYQMAFTDSH LWKLLDRHAN TIRLFVLLPE QSPGSYSKRT 851 900 ENSTTRP00000009994/1-1362 AYQKAGGDSG NVDDDCERVK GPAGGLKSVE AILEESTEKL KSLSLQQQQE ENSBTAP00000014505/1-1375 AYQKAGGDSG NVGDDCERVK GPAGSLKSVE AILEESTEKL KSLSLQQQQE ENSP00000339957/1-1287 AYQKAGGDSG NVDDDCERVK GPVGSLKSVE AILEESTEKL KSLSLQQQQD bmy_04022T0/1-1229 AYQKAGGDSG NVDDDCERVK GPAGGLKSVE AILEESTEKL KSLSLQQQQE BACU005651/1-1135 AYQKAGGDSG NVDDDCERVK GPAGGLKSVE AILEESTEKL KSLSLQQQQE 901 950 ENSTTRP00000009994/1-1362 GDNGDSSKST ETSDFENIES PLNERDSSAS VDNRELEQHI QTSDPENFQS ENSBTAP00000014505/1-1375 GDNGDSSKST ETSDFENIES PLNERGSSAS VDNRELEQHM QTSDPENFQS ENSP00000339957/1-1287 GDNGDSSKST ETSDFENIES PLNERDSSAS VDNRELEQHI QTSDPENFQS bmy_04022T0/1-1229 GDNGDSSKST ETSDFENIES PLNERDSSAS VDNRELEQHI QTSDPENFQS BACU005651/1-1135 GDNGDSSKST ETSDFENIES PLNERDSSAS VDNRELEQHI QTSDPENFQS 951 1000 ENSTTRP00000009994/1-1362 EERSDSDVNN DRSTSSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014505/1-1375 EERSDSDVNN DRSTSSVDSD ILSSSHSSDT LCNADNAQIP LANGLDSHSI ENSP00000339957/1-1287 EERSDSDVNN DRSTSSVDSD ILSSSHSSDT LCNADNAQIP LANGLDSHSI bmy_04022T0/1-1229 EERSDSDVNN DRSTSSVDSD ILSSSHSSDT LCNADNAQIP LANGLDSHSI BACU005651/1-1135 EERSDSDVNN DRSTSSVDSD ILSSSHSSDT LCNADNAQIP LANGLDSHSI 1001 1050 ENSTTRP00000009994/1-1362 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014505/1-1375 TSSRRTKANE GKKETWDTAE EDSGTDSEYD ESGKSRGEIQ YMYFKAEPYA ENSP00000339957/1-1287 TSSRRTKANE GKKETWDTAE EDSGTDSEYD ESGKSRGEMQ YMYFKAEPYA bmy_04022T0/1-1229 TSSRRTKANE GKKETWDTAE EDSGTDSEYD ESGKSRGEIQ YMYFKAEPYA BACU005651/1-1135 TSSRRTKANE GKKETWDTAE EDSGTDSEYD ESGKSRGEIQ YMYFKAEPYA 1051 1100 ENSTTRP00000009994/1-1362 XXXXXXXXXX XLMVHVDKRI TLAAFKQHLE PFVGVLSSHF KVFRVYASNQ ENSBTAP00000014505/1-1375 ADEGSGEGHK WLMVHVDKRI TLATFKQHLE PFVGVLSSHF KVFRVYASNQ ENSP00000339957/1-1287 ADEGSGEGHK WLMVHVDKRI TLAAFKQHLE PFVGVLSSHF KVFRVYASNQ bmy_04022T0/1-1229 ADESSGEGHK WLMVHVDKRI TLAAFKQHLE PFVGVLSSHF KVFRVYASNQ BACU005651/1-1135 ADESSGEGHK WLMVHVDKRI TLAAFKQHLE PFVGVLSSHF KVFRVYASNQ 1101 1150 ENSTTRP00000009994/1-1362 EFESVRLNET LSSFSDDNKI TIRLGRALKK GEYRVKVYQL LVNEQEPCKF ENSBTAP00000014505/1-1375 EFESVRLNET LSSFSDDNKI TIRLGRALKK GEYRVKVYQL LVNEQEPCKF ENSP00000339957/1-1287 EFESVRLNET LSSFSDDNKI TIRLGRALKK GEYRVKVYQL LVNEQEPCKF bmy_04022T0/1-1229 EFESVRLNET LSSFSDDNKI TIRLGRALKK GEYRVKVYQL LVNEQEPCKF BACU005651/1-1135 EFESVRLNET LSSFSDDNKI TIRLGRALKK GEYRVKVYQL LVNEQEPCKF 1151 1200 ENSTTRP00000009994/1-1362 LLDAVFAKGM TVRQSKEELI PQLREQCGLE LSIDRFRLRK KTWKNPGTVF ENSBTAP00000014505/1-1375 LLDAVFAKGM TVRQSKEELI PQLREQCGLE LSIDRFRLRK KTWKNPGTVF ENSP00000339957/1-1287 LLDAVFAKGM TVRQSKEELI PQLREQCGLE LSIDRFRLRK KTWKNPGTVF bmy_04022T0/1-1229 LLDAVFAKGM TVRQSKEELI PQLREQCGLE LSIDRFRLRK KTWKNPGTVF BACU005651/1-1135 LLDAVFAKGM TVRQSKEELI PQLREQCGLE LSID------ ---------- 1201 1250 ENSTTRP00000009994/1-1362 LDYHIYEEDI NISSNWEVFL EVLDGAEKMK SMSQLAVLSR RWRPSEMKLD ENSBTAP00000014505/1-1375 LDYHIYEEDI NISSNWEVFL EVLDGVEKMK SMSQLAVLSR RWRPSEMKLD ENSP00000339957/1-1287 LDYHIYEEDI NISSNWEVFL EVLDGVEKMK SMSQLAVLSR RWKPSEMKLD bmy_04022T0/1-1229 LDYHIYEEDI NISSNWEVFL EVLDGAEKMK SMSQLAVLSR RWRPSEMKLD BACU005651/1-1135 ---SDLEEQF CLSHLLVLII NI--GAEKMK SMSQLAVLSR RWRPSEMKLD 1251 1300 ENSTTRP00000009994/1-1362 PFQEVVLESS SVDELREKLC EISGIPLEDI EFAKGRGTFP CDISVLDIHQ ENSBTAP00000014505/1-1375 PFQEVVLESS SVDELRDKLY EISGIPVEDI EFAKGRGTFP CDISVLDIHQ ENSP00000339957/1-1287 PFQEVVLESS SVDELREKLS EISGIPLDDI EFAKGRGTFP CDISVLDIHQ bmy_04022T0/1-1229 PFQEVVLESS SVDELREKLC EISGIPLEDI EFAKGRGTFP CDISVLDIHQ BACU005651/1-1135 PFQEVVLESS SVDELREKLC EISGIPLEDI EFAKGRGTFP CDISVLDIHQ 1301 1350 ENSTTRP00000009994/1-1362 DLDWNPKVST LNVWPLYICD DGAVIFYRDK TEELMELTDE QRNELMKKES ENSBTAP00000014505/1-1375 DLDWNPKVST LNVWPLYICD DGAVIFYRDR REELMELTDE QRNELMKKES ENSP00000339957/1-1287 DLDWNPKVST LNVWPLYICD DGAVIFYRDK TEELMELTDE QRNELMKKES bmy_04022T0/1-1229 DLDWNPKVST LNVWPLYICD DGAVIFYRDK TEELMELTDE QRNELMKKES BACU005651/1-1135 DLDWNPKVST LNVWPLYICD DGAVIFYRDK TEELMELTDE QRNELMKKES 1351 1400 ENSTTRP00000009994/1-1362 SRLQKTGHRV TYSPRKEKAL KIYLDGAPNK DLTQD ENSBTAP00000014505/1-1375 SRLQKTGHRV TYSPRKEKAL KIYLDGAPNK DLTQD ENSP00000339957/1-1287 SRLQKTGHRV TYSPRKEKAL KIYLDGAPNK DLTQD bmy_04022T0/1-1229 SRLQKTGHRV TYSPRKEKAL KIYLDGAPNK DLTQD BACU005651/1-1135 SRLQKTGHRV TYSPRKEKAL KIYLDGAPNK DLTQD