KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:06 2014 Check: 00 .. Name: ENSP00000268679/1-653 Len: 667 Check: 9957 Weight: 1.00 Name: ENSTTRP00000004437/1-643 Len: 667 Check: 3396 Weight: 1.00 Name: ENSBTAP00000014515/1-601 Len: 667 Check: 6108 Weight: 1.00 Name: bmy_21827T0/1-606 Len: 667 Check: 4510 Weight: 1.00 Name: BACU004280/1-592 Len: 667 Check: 971 Weight: 1.00 // 1 50 ENSP00000268679/1-653 MPASRLRDRA ASSASGSTCG SMSQTHPVLE SGLLASAGCS APRGPRKGGP ENSTTRP00000004437/1-643 -------PPA AGSVSGPTSS SMSRVSPVLE SGLTAPTSCS APRGPRKGGP ENSBTAP00000014515/1-601 ---------- ---------- ---------- ---------- ---------- bmy_21827T0/1-606 ---------- ---------- ---------- ---------- --------MA BACU004280/1-592 ---------- ---------- ---------- ---------- --------MA 51 100 ENSP00000268679/1-653 APVDRKAKAS AMPDSPAEVK TQPRSTPPSM PPPPPAASQG ATRPPSFTPH ENSTTRP00000004437/1-643 ATADRKEKAS AMPGSPAEVK TQPQATPPSM PPPPPAASQG ATRHPPFTPH ENSBTAP00000014515/1-601 ---DRKEKAT AMPDSPAEVK TQPRATPPSM PPPPPAASQG ATRHPSFTPH bmy_21827T0/1-606 PTADRKEKAS AMPGSPAEVK TQPRATPPSM PPPPPAASQG ATRHPSFTPH BACU004280/1-592 PTADRKEKAS AMPGSPAEVK TQPRATPPSM PPPPPAASQG ATRHPSFTPH 101 150 ENSP00000268679/1-653 THREDGPA-T LPHGRFHGCL KWSMVCLLMN GSSHSPTAIN GAPCTPNGFS ENSTTRP00000004437/1-643 TNREDGPAMS LPHGRFHGCL KWSMVCLXXX XXXXXXXXXX XXXXXXXXFS ENSBTAP00000014515/1-601 TNREDGPAMS LPHGRFHGCL KWSMVCLLMN GSSHSPTAIS GAPSTPNGFS bmy_21827T0/1-606 TNREDGPAMS LPHGRFHGCL KWSMVCLLMN GSSPSPTAVS GTPSTPSGFS BACU004280/1-592 T--------- ---------- -------MMN GSSPSPTAVS GTPSTPSGFS 151 200 ENSP00000268679/1-653 NGPATSSTAS LSTQHLPPAC GARQLSKLKR FLTTLQQFGS DISPEIGERV ENSTTRP00000004437/1-643 NGPVTSCAAL --TQQLPP-C EARQLSKLKR FLV-LQQFGS DISPEIGERV ENSBTAP00000014515/1-601 NGPATSCTAA LSTQQLPPAC GARQLSKLKR FLATLQQFGS DISPEIGERV bmy_21827T0/1-606 NGPATSCTAS LSTQQLPPAC GARQLSKLKR FLATLQQFGS DISPEIGERV BACU004280/1-592 NGPATSCTAS LSTQQLPPAC GARQLSKLKR FLATLQQFGS DISPEIGERV 201 250 ENSP00000268679/1-653 RTLVLGLVNS TLTIEEFHSK LQEATNFPLR PFVIPFLKAN LPLLQRELLH ENSTTRP00000004437/1-643 RTLVLGLVNS TLTIEEFHSK LQEATNFPLR PFVIPFLKAN LPLLQRELLH ENSBTAP00000014515/1-601 RTLVLGLVNS TLTIEEFHSK LQEATNFPLR PFVIPFLKAN LPLLQRELLH bmy_21827T0/1-606 RTLVLGLVNS TLTIEEFHSK LQEATNFPLR PFVIPFLKAN LPLLQRELLH BACU004280/1-592 RTLVLGLVNS TLTIEEFHSK LQEATNFPLR PFVIPFLKAN LPLLQRELLH 251 300 ENSP00000268679/1-653 CARLAKQTPA QYLAQHEQLL LDASASSPID SSELLLEVNE NGKRRTPDRT ENSTTRP00000004437/1-643 CARLAKQTPA QYLAQHEQLL LDASASSPTD SSELLPEVNE NGKRRTPDRT ENSBTAP00000014515/1-601 CARLAKQSPA QYLAQHEQAL LDADASSPVD SSELLLEVND NGKRRTPDRT bmy_21827T0/1-606 CARLAKQTPA QYLAQHEQLL LDANASSPTD PSELLPEVNE NGKRRTPDRT BACU004280/1-592 CARLAKQTPA QYLAQHEQLL LDANASSPTD PSELLPEVNE NGKRRTPDRT 301 350 ENSP00000268679/1-653 KENGSDRDPL HPEHLSKRPC TLNPAQRYSP SNGPPQPTPP PHYRLEDIAM ENSTTRP00000004437/1-643 KENGSDRDPL HPDHLSKRPC TLSPAQRCSP SNGLPQPTPP PHYRLEDMAV ENSBTAP00000014515/1-601 KENGSDRDPL HPDHLSKRPC TLSPAQRYSP SNGLPHPPPP PHYRLEDMAM bmy_21827T0/1-606 KENGSDRDPL HPDHLSKRPC TLSPAQRCSP SNGLPQPTPP PHYRLEDMAV BACU004280/1-592 KENGSDRDPL HPDHLSKRPC TLSPAQRCSP SNGLPQPTPP LHYRLEDMAV 351 400 ENSP00000268679/1-653 AHHFRDAYRH PDPRELRERH RPLVVPGSRQ EEVIDHKLTE REWAEEWKHL ENSTTRP00000004437/1-643 AHHFRDSYRH LDPRELRERH RQLAVHGSRP EEVIDHRLTE REWSEEWKHL ENSBTAP00000014515/1-601 AHHFRDSYRH LDPRELRERH RQLAMHGSRP EEVIDHRLTE REWAEEWKHL bmy_21827T0/1-606 AHHFRDSYRH LDPRELRERH RQLAVHGSRP EEVIDHRLTE REWSEEWKHL BACU004280/1-592 AHHFRDSYRH LDPRELRERH RQLAVHGSRP EEVIDHRLTE REWSEEWKHL 401 450 ENSP00000268679/1-653 NNLLNCIMDM VEKTRRSLTV LRRCQEADRE ELNHWARRYS D-AEDTKKGP ENSTTRP00000004437/1-643 NNLLTCIMDM AEKTRRSLTV LRRCQEADRE ELNHWIRRHS DAAQDSKKGP ENSBTAP00000014515/1-601 NNLLNCIMDM AEKTRRSLTV LRRCQEADRE ELNHWIRRCS DVAEDSKKGP bmy_21827T0/1-606 NNLLNCIMDM AEKTRRSLTV LRRCQEADRE ELNHWIRRYS DAAEDSKKGP BACU004280/1-592 NNLLNCIMDM AEKTRRSLTV LRRCQEADRE ELNHWIRRYS DAAEDSKKGP 451 500 ENSP00000268679/1-653 APAAARPRSS SAGPEGPQLD VPREFLPRTL TGYVPEDIWR KAEEAVNEVK ENSTTRP00000004437/1-643 AP-AARPLGS SAGAEGSQLD VHRESVPRTL SSYVPEEIWR KAEEAVNEVK ENSBTAP00000014515/1-601 GP-TARPLGS SVGTEGAQLD VHREFMPRTL SGYMPEEIWR KAEEAVNEVK bmy_21827T0/1-606 AP-AARPLGS SVGAEGSQLD VHRESVPRTL SSYMPEEIWR KAEEAVNEVK BACU004280/1-592 AP-AARPLGS SVGAEGSQLD VHRESVPRTL SSYMPEEIWR KAEEAVNEVK 501 550 ENSP00000268679/1-653 RQAMSELQKA VSDAERKAHE LITTERAKME RALAEAKRQA SEDALTVINQ ENSTTRP00000004437/1-643 RQAMSELQKA VLDAERKAHE LISMERAKME RALAEARRQA SEDALTVVNQ ENSBTAP00000014515/1-601 RQAMSELQKA VSDAERKAHE LISTERAKME RALAEARRQA SEDALTVVNQ bmy_21827T0/1-606 RQAMSELQKA VSDAERKAHE LISMERAKME RALAEARRQA SEDALTVVNQ BACU004280/1-592 RQAMSELQKA VSDAERKAHE LISMERAKME RALAEARRQA SEDALTVVNQ 551 600 ENSP00000268679/1-653 QEDSSESCWN CGRKASETCS GCNAARYCGS FCQHRDWEKH HHVCGQSLQG ENSTTRP00000004437/1-643 QEDSSESCWN CGRKASETCS GCNAARYCGS FCQHKDWEKH HHVCGQSLQG ENSBTAP00000014515/1-601 QEDSSESCWN CGRKASETCS GCNAARYCGS FCQHKDWEKH HHVCGQSLQG bmy_21827T0/1-606 QEDSSESCWN CGRKASETCS GCNAARYCGS FCQHKDWEKH HHVCGQSLQG BACU004280/1-592 QEDSSESCWN CGRKASETCS GCNAARYCGS FCQHKEWEKH HHVCGQSLQG 601 650 ENSP00000268679/1-653 PTAVVADPVP GPPEAAHSLG PSLPVG---- --------AA SPSEAGSAGP ENSTTRP00000004437/1-643 PSAAAAEPVP GQPDATPGLG PCLPPA---- --------AA SPSEAGSTGT ENSBTAP00000014515/1-601 PAAAVAEPVP GQSDTATGLG PCLPPA---- --------AA SPSEAGSTGP bmy_21827T0/1-606 PSAAVVEPVP GQSDATPGLG PCLPPA---- --------AA SPSEAGSTGP BACU004280/1-592 PSAAVVEPVP GQSDATPGLG PCLPPAXXXX XXXXXXXXXX XXXXXXXXXX 651 700 ENSP00000268679/1-653 SRPGSPSPPG PLDTVPR ENSTTRP00000004437/1-643 SRPGSPGPPG PLDAAPR ENSBTAP00000014515/1-601 SRPGSPGPPG PLDAAPR bmy_21827T0/1-606 SRPGSPGPPG PLDAAPR BACU004280/1-592 XXXXXXXXXX XXXAAPR