KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:08 2014 Check: 00 .. Name: ENSP00000327545/1-500 Len: 503 Check: 9064 Weight: 1.00 Name: ENSTTRP00000016557/1-453 Len: 503 Check: 5319 Weight: 1.00 Name: ENSBTAP00000014522/1-422 Len: 503 Check: 3028 Weight: 1.00 Name: bmy_21231T0/1-303 Len: 503 Check: 9842 Weight: 1.00 Name: BACU013370/1-266 Len: 503 Check: 2035 Weight: 1.00 // 1 50 ENSP00000327545/1-500 LKFLAVLLAA GMLAFLGAVI CIIASVPLAA SPARALPGGA DNASVASGAA ENSTTRP00000016557/1-453 ---------- ---------- ---------- ---------- ------SGAA ENSBTAP00000014522/1-422 ---------- ---------- ---------- ---------- ---------- bmy_21231T0/1-303 ---------- ---------- ---------- ---------- ---------- BACU013370/1-266 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000327545/1-500 ASPGPQRSLS ALHGAGGSAG PPALPGAPAA SAHPLPPGPL FSRFLCTPLA ENSTTRP00000016557/1-453 ASQGPQRSLS ALHGAGGSAG PPALPGAPAA SAHPLPPVPL FIRFLCTPLA ENSBTAP00000014522/1-422 ---------- ---------- ------APAA SAHPLPPVPL FSRFLCTPLA bmy_21231T0/1-303 ---------- ---------- ---------- ---------- ---------- BACU013370/1-266 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000327545/1-500 AACPSGAQQG DAAGAAPGER EELLLLQSTA EQLRQTALQQ EARIRADQDT ENSTTRP00000016557/1-453 AACPSGAEQG D---AAPSER EELLLLQSTA EQLRQTALQQ EARIRADQDT ENSBTAP00000014522/1-422 AACPSGAEPG D---AAPGER EELLLLQSTA EQLRQTALQQ EARIRADQDT bmy_21231T0/1-303 ---------- ---------- ---------- ---------- ---------- BACU013370/1-266 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000327545/1-500 IRELTGKLGR CESGLPRGLQ GAGPRRDTMA DGPWDSPALI LELEDAVRAL ENSTTRP00000016557/1-453 IRELTGKLGR CESGLPRGLQ DAGPRRDTMA DGPWDSPALI LELEDAVRAL ENSBTAP00000014522/1-422 IRELTGKLGR CESGLPRGLQ EAGPRRDTMA DGPWDSPALI LELEDAVRAL bmy_21231T0/1-303 --------PR VSLSVPR--- ---------- ---------- ---------- BACU013370/1-266 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000327545/1-500 RDRIDRLE-Q ELPARVNLSA APAPVSAVPT GLHSKMDQLE GQLLAQVLAL ENSTTRP00000016557/1-453 RDRIDRIE-Q ELPARVNFSA APAPAPVVPT ALHSEMDELE GQLLAKVLAL ENSBTAP00000014522/1-422 RDRIDRIEQQ ELPARVNFSA APAPAPVVPT ALHSKMDELE GQLLAKVLAL bmy_21231T0/1-303 -------EQQ ELPARVNFSA APAPAPVVPT ALHSKMDELE GQLLAKVLAL BACU013370/1-266 ---------- ---------- ---------- -----MDELE GQLLAKVLAL 251 300 ENSP00000327545/1-500 EKERVALSHS SRRQRQEVEK ELDVLQGRVA ELEHGSSAYS PPDAFKISIP ENSTTRP00000016557/1-453 EKERVALGHS SQQQRQEVAK ELDTLQDRVA ELERGSSAYS PPDAFRLSIP ENSBTAP00000014522/1-422 EKERMALGHS SQQQRQEVEK ELDALQDRVA ELEHGSSAYS PPDAFKISIP bmy_21231T0/1-303 EKERVALSHS SQQQRQEVEK ELDALQDRVA ELEHGSSAYS PPDAFKISIP BACU013370/1-266 EKERVALSHS SQQQRQEVEK ELDALQDRVA ELEHGSSAYS PPDAFKISIP 301 350 ENSP00000327545/1-500 IRNNYMYARV RKALPELYAF TACMWLRSRS SGTGQGTPFS YSVPGQANEI ENSTTRP00000016557/1-453 IRNNYMYGRV RKALPELYAF SVCMWLRSRS GGTGQGTPFS YSVPGQANEI ENSBTAP00000014522/1-422 IRNNYMYARV RKALPELYAF TVCMWLRSRS GGTGQGTPFS YSVPGQANEI bmy_21231T0/1-303 IRNNYMYARV RKALPELYAF SVCMWLRSRS GGTGQGTPFS YSVPGQANEI BACU013370/1-266 IRNNYMYARV RKALPELYAF SVCMWLRSRS GGTGQGTPFS YSVPGQANEI 351 400 ENSP00000327545/1-500 VLLEAGHEPM ELLINDKVAQ LPLSLKDNGW HHICIAWTTR DGLWSAYQDG ENSTTRP00000016557/1-453 VLLEAGHDPM ELLINDKVAQ LPLSLKDNGW HHICLSWTTR DGLWSAYQDG ENSBTAP00000014522/1-422 VLLEAGHDPM ELLINDKVAQ LPLSLKDNGW HHICIAWTTR DGLWSAYQDG bmy_21231T0/1-303 VLLEAGHDPM ELLINDKVAQ LPLSLKDNGW HHICLSWTTR DGLWSAYQDG BACU013370/1-266 VLLEAGHDPM ELLINDKVAQ LPLSLKDNGW HHICLSWTTR DGLWSAYQDG 401 450 ENSP00000327545/1-500 ELQGSGENLA AWHPIKPHGI LILGQEQDTL GGRFDATQAF VGDIAQFNLW ENSTTRP00000016557/1-453 ELQGSGENLA AWHPVKPHGI LILGQEQDTL GGRFDATQAF VGDIAQFNLW ENSBTAP00000014522/1-422 ELRGSGENLA AWHPIKPHGI LILGQEQDTL GGRFDATQAF VGDIAQFNLW bmy_21231T0/1-303 ELRGSGENLA AWHPIKPHGI LILGQEQDTL GGRFDATQAF VGDIAQFNLW BACU013370/1-266 ELRGSGENLA AWHPIKPHGI LILGQEQDTL GGRFDATQAF VGDIAQFNLW 451 500 ENSP00000327545/1-500 DHALTPAQVL GIANCTAPLL GNVLPWEDKL VEAFGGATKA AFDVCKGRAK ENSTTRP00000016557/1-453 DHILTPAQVL GIANCTGPLL GNVIPWEDKL VEAFGGATKA AFDVCKGRAR ENSBTAP00000014522/1-422 DHALTPAQVL GIANCTGPLL GNILPWEDKL VEAFGGATKA AFDVCKGRAK bmy_21231T0/1-303 DHTLTPAQVL GIANCTGPLL GNIIPWEDKL VEAFGGATKA AFDVCKGQAK BACU013370/1-266 DHTLTPAQVL GIANCTGPLL GNIIPWEDKL VEAFGGATKA AFDVCKGRAK 501 550 ENSP00000327545/1-500 A-- ENSTTRP00000016557/1-453 AKA ENSBTAP00000014522/1-422 A-- bmy_21231T0/1-303 A-- BACU013370/1-266 A--