KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:12 2014 Check: 00 .. Name: ENSTTRP00000013805/1-1216 Len: 1454 Check: 8733 Weight: 1.00 Name: ENSP00000302935/1-1332 Len: 1454 Check: 777 Weight: 1.00 Name: ENSBTAP00000014556/1-1327 Len: 1454 Check: 3736 Weight: 1.00 Name: bmy_07518T0/1-1216 Len: 1454 Check: 2625 Weight: 1.00 Name: BACU016035/1-1411 Len: 1454 Check: 8278 Weight: 1.00 // 1 50 ENSTTRP00000013805/1-1216 ---------- ---------- ---------- ---------- ---------- ENSP00000302935/1-1332 MESHSRAGKS RKSAKFRSIS RSLMLCNAKT SDDGSSPDEK YPDPFEISLA ENSBTAP00000014556/1-1327 MEPHSRSGKS RKSTKLRSIS RSLILCNAQT SDDSSSPDER YPDPFEISLG bmy_07518T0/1-1216 ---------- ---------- ---------- ---------- ----MEIVL- BACU016035/1-1411 MESHSHSGKS RKSTKFRSIS RSLILCNAKT SDDGSSPDER YPDPFEISLG 51 100 ENSTTRP00000013805/1-1216 ---------- ---------- ---------- ---------- ---------- ENSP00000302935/1-1332 QGKEGIFHSS VQLADTSEAG PSSVPDLALA SEAAQLQAAG NDRGKTCRRI ENSBTAP00000014556/1-1327 QDKEGIFHSS VQLADTSEAV PRSIPDLTLS SEATQLQAAG NDRGKACRRM bmy_07518T0/1-1216 ---------- ---------- ---------- ---------- ---------- BACU016035/1-1411 QGKEGLFLSS VQLADTSEAG PGSVPDLTLS SEAAQLQAAG SDGGQNCRRV 101 150 ENSTTRP00000013805/1-1216 ---------- ---------- ---------- ---------- ---------- ENSP00000302935/1-1332 FFM------- ---------- ---------- ---------- ---------- ENSBTAP00000014556/1-1327 FFT------- ---------- ---------- ---------- ---------- bmy_07518T0/1-1216 ---------- ---------- ---------- ---------- ---------- BACU016035/1-1411 FFMKVRPGFV GLEEPAAAFR CCECKSSRLF IPKSGRHRVL ILNKSREEVE 151 200 ENSTTRP00000013805/1-1216 ---------- ---------- ---------- ---EASTPSS REKSGKLDAQ ENSP00000302935/1-1332 ---------- ---------- ---------- --KESSTASS REKPGKLEAQ ENSBTAP00000014556/1-1327 ---------- ---------- ---------- --KRAAEMTS KSKSARPKKK bmy_07518T0/1-1216 ---------- ---------- ---------- --QEASTPSS REKSGKLDAQ BACU016035/1-1411 AGPSGMLTRS TAVNQAQLTF LLETFFEILC QAQEASTPSS REKSGKLDAQ 201 250 ENSTTRP00000013805/1-1216 SSNFLFPKAC HQRTRSNSTS VNPYCTGEID FPMTKKSAAS TDRQPYSLCS ENSP00000302935/1-1332 SSNFLFPKAC HQRARSNSTS VNPYCTREID FPMTKKSAAP TDRQPYSLCS ENSBTAP00000014556/1-1327 NSHFLGPKSY NQKERAQTTS VNPYCTGEMD FPTTKKSAAS ADRQPYSLCS bmy_07518T0/1-1216 SSNFLFPKAC HQRTRSNSTS VNPYCTGEID FPMTKKSAAS TDRQPYSLCS BACU016035/1-1411 SSNFLFPKAC HQRTRSNSTS VNPYCTGEID FPMTKKSAAS ADRQPYSLCS 251 300 ENSTTRP00000013805/1-1216 NRKSLSQQLD CAAGKAV--- ---------- ---------- ---------- ENSP00000302935/1-1332 NRKSLSQQLD CPAGKAA--- ---------- ---------- ---------- ENSBTAP00000014556/1-1327 GRKSLSQQLD FPAAKAV--- ---------- ---------- ---------- bmy_07518T0/1-1216 NRKSLSQQLD CAAGKAVVRT KAGDPGEQGE RGGQGVCCRP VDSSSPHPGP BACU016035/1-1411 NRKSLSQQLD CAAGKAV--- ---------- ---------- ---------- 301 350 ENSTTRP00000013805/1-1216 ---GPSRPIR SLSTAQLMQP LGGLQASVIS NIVLMKGQAK GLGFSIVGGK ENSP00000302935/1-1332 ---GTSRPTR SLSTAQLVQP SGGLQASVIS NIVLMKGQAK GLGFSIVGGK ENSBTAP00000014556/1-1327 ---GLSRPTR SLSTAQLVQP SGGLQASVIS NIVLMKGQAK GLGFSIVGGK bmy_07518T0/1-1216 SFQGPSRPMR SLSTAQLMQP LGGLQASVIS NIVLMKGQAK GLGFSIVGGK BACU016035/1-1411 ---GPSRPMR SLSTAQLMQP LGGLQASVIS NIVLMKGQAK GLGFSIVGGK 351 400 ENSTTRP00000013805/1-1216 DSIYGPIGIY VKTIFAGGAA AADGRLQEGD EILELNGESM AGLTHQDALQ ENSP00000302935/1-1332 DSIYGPIGIY VKTIFAGGAA AADGRLQEGD EILELNGESM AGLTHQDALQ ENSBTAP00000014556/1-1327 DSIYGPIGIY VKTIFAGGAA AADGRLQEGD EILELNGESM AGLTHQDALQ bmy_07518T0/1-1216 DSIYGPIGIY VKTIFAGGAA AADGRLQEGD EILELNGESM AGLTHQDALQ BACU016035/1-1411 DSIYGPIGIY VKTIFAGGAA AADGRLQEGD EILELNGESM AGLTHQDALQ 401 450 ENSTTRP00000013805/1-1216 KFKQAKKGLL ALTVRTRLTA PHSLSSRLSP PLCRSLSSST CVTKDCNSFI ENSP00000302935/1-1332 KFKQAKKGLL TLTVRTRLTA PPSLCSHLSP PLCRSLSSST CITKDSSSFA ENSBTAP00000014556/1-1327 KFKQAKKGLL TLTVRTRLTA PHSLGSHLSP PLCRSLSSST CVTKDCGSFI bmy_07518T0/1-1216 KFKQAKKGLL TLTVRTRLTA PHSLSSHLSP PLCRSLSSST CVTKDCNSFI BACU016035/1-1411 KFKQAKKGLL TLTVRTRLTA PHSLSSHLSP TLCCSLSSST CVSKDCNSFI 451 500 ENSTTRP00000013805/1-1216 LESPEAPASS TKPNYRILVE VSLKKXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302935/1-1332 LESPSAPIST AKPNYRIMVE VSLQKEAGVG LGIGLCSVPY FQCISGIFVH ENSBTAP00000014556/1-1327 LDSPEAPTSS TKPNDRILVE VSLEKEAGVG LGIGLCSVPY FQCISGIFVH bmy_07518T0/1-1216 LESPEAPASS AKPNYRILVE VSLKKEAGVG LGIGLCSVPY FQCISGIFIH BACU016035/1-1411 LESPEAPTSS AKPNYRILVE VSLKKEAGVG LGIGLCSVPY FQCISGIFIH 501 550 ENSTTRP00000013805/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000302935/1-1332 TLSPGSVAHL DGRLRCGDEI VEISDSPVHC LTLNEVYTIL SHCDPGPVPI ENSBTAP00000014556/1-1327 TLSPGSVAHL DGRLRCGDEL VEINDSPVHC MTLNEVYAIL SHCNPGPIPI bmy_07518T0/1-1216 TLSPGSVAHL DGRLRCGDEL VEINDSPVHC MTLNEVYAIL SHCNPGPVPI BACU016035/1-1411 TLSPGSVAHL DGRLRCGDEL VEINDCPVHC MTLNEVYAIL SHCNPGPVPI 551 600 ENSTTRP00000013805/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV KRMEISWHGR ENSP00000302935/1-1332 IVSRHPDPQV SEQQLKEAVA QAVENTKFGK ERHQWSLEGV KRLESSWHGR ENSBTAP00000014556/1-1327 MVSRHPDPQV SEQQLKEAVA QAVENVKFGK ERHQWSLEGV KRLESSWHGR bmy_07518T0/1-1216 MVSRHPDPQV SEQQLKEAVA QAVENVKFGK ERHQWSLEGV KRLESSWHGR BACU016035/1-1411 MVSRHPDPQV SEQQLKEAVA QAVENVKFGK ERHQWSLEGV KRLESSWHGR 601 650 ENSTTRP00000013805/1-1216 PTLEKDREKN SAPPHRRAPK VMIRSSSDSS YMSGSPGGSP SSG-GEQPPS ENSP00000302935/1-1332 PTLEKEREKN SAPPHRRAQK VMIRSSSDSS YMSGSPGGSP GSGSAEKPSS ENSBTAP00000014556/1-1327 PTLEKERDKN SAPPHRRAQK VMIRSSSDSS YMSGSPGGSP SSS-GEQPPS bmy_07518T0/1-1216 PTLEKDREKN SAPPHRRAQK VMIRSSSDSS YMSGSPGGSP SSG-GEQPPS BACU016035/1-1411 PTLEKDREKN SAPPHRRAQK VMIRSSSDSS YMSGSPGGSP SSG-GEQPPS 651 700 ENSTTRP00000013805/1-1216 DLEVSTRSPS LPLGPEPGVP PGASSGPPQE SP------GG HPPLRLKKSF ENSP00000302935/1-1332 DVDISTHSPS LPLAREPVVL SIASSRLPQE SPPLPESRDS HPPLRLKKSF ENSBTAP00000014556/1-1327 DLEVSVHNPS LPLGREAGVP PGASSRHPQE NLPLPASQGS HPPLRLKKSF bmy_07518T0/1-1216 DLEVSTHSPS LPLGPEPGVP PGASSRPPQE SPPLPESQGG HPPLRLKKSF BACU016035/1-1411 DLEVSTHSPS LPLGPEPGVP PRASSRPPQE SPPLPESQGG HPPLRLKKSF 701 750 ENSTTRP00000013805/1-1216 EILVRKPTSS KPKPPPRKYF KSDSDPQKSL EERGGSLCPP GHTLPTCGQE ENSP00000302935/1-1332 EILVRKPMSS KPKPPPRKYF KSDSDPQKSL EERENSSCSS GHTPPTCGQE ENSBTAP00000014556/1-1327 EILVRKPTSS KPKPPPRKYF KSDSDPQKSL EERKDSLCPS GHTLPTCGQE bmy_07518T0/1-1216 EILVRKPTSS KPKPPPRKYF KSDSDPQKSL EEREDSLRPS GHTLPTCGQE BACU016035/1-1411 EILVRKPTSS KPKPPPRKYF KSDSDPQKSL EEREDSLRPS GHTLPTCGQE 751 800 ENSTTRP00000013805/1-1216 ASEVLPPLPV QEGAAGRSPH ATACSPGPAV GPQTTSSSEG QPGRRGGSPX ENSP00000302935/1-1332 ARELLPLLLP QEDTAGRSPS ASAGCPGPGI GPQTKSSTEG EPGWRRASPV ENSBTAP00000014556/1-1327 ARELLPPPPP QEDTAGRTPH TAAGHPGPVV GPHTTSLSEG QPGRRAASPG bmy_07518T0/1-1216 ASEVLPPLPV REGAAGRTPH ATACSPGPAV GPQTTSSSEG QPGRRGASPV BACU016035/1-1411 ASEVLPPLPV WEGAAGRTPH ATACSPGPAV GPQTTSSSEG QPGRRGASPV 801 850 ENSTTRP00000013805/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SPVMSENHSH ENSP00000302935/1-1332 TQTSPIKHPL LKRQARMDYS FDTTAEDPWV RISDCIKNLF SPIMSENHGH ENSBTAP00000014556/1-1327 TQTSPVKHPL LRRQARMDYS LETTAEDPWV RISDCIKNLF SPIMSENHNH bmy_07518T0/1-1216 TPTSPIKHPL LKRQARMDYT LDIPAEDPWV RISDCIKNLF SPVMSENHSH BACU016035/1-1411 TPTSPIKHPL LKRQARMDYT LDITAEDPWV RISDCIKNLF SPVMSENHSH 851 900 ENSTTRP00000013805/1-1216 TPLQPVVTLG EEDGIQGHPD GTVPKLDTTS GGPTVYKSAD GSTVKKGPPV ENSP00000302935/1-1332 MPLQPNASLN EEEGTQGHPD GTPPKLDTAN GTPKVYKSAD SSTVKKGPPV ENSBTAP00000014556/1-1327 VPLQPDAPLG EEDGMRGHPD GAAAKLDTTG GGPKAYKQAG GSTVKKGPPV bmy_07518T0/1-1216 TPLQPVVTLG EEDGIQGHPD GTVPKLDTTS GGPTVYKSAD GSTVKKGPPV BACU016035/1-1411 TPLQPVVTLG EEDGIQGHPD GTVPKLDTTS GGPTVYKSAD GSTVKKGPPV 901 950 ENSTTRP00000013805/1-1216 APKPTWFRQS LKDLRNRA-- PRQPPEAASA SQPTPTSRER PGPPLRA--- ENSP00000302935/1-1332 APKPAWFRQS LKGLRNRASD PRGLPDPALS TQPAPASREH LGSHIRASSS ENSBTAP00000014556/1-1327 APKPAWFRQS LKGLRNRV-- PDSRREMAAS CQPTPTSRER PGPPLRA--- bmy_07518T0/1-1216 APKPAWFRQS LKDLRNRA-- PRQPPEAASP SQPTPTSRER PGPPLRA--- BACU016035/1-1411 APKPAWFRQS LKDLRNRA-- PGQPPETASP SQLTPTSRER PGPPLRA--- 951 1000 ENSTTRP00000013805/1-1216 SSSIKQRISS FETFGSSHRP DKGAQRLSLQ PSSSSGAEAK PPGEQEGGRA ENSP00000302935/1-1332 SSSIRQRISS FETFGSSQLP DKGAQRLSLQ P--SSGEAAK PLGKHEEGRF ENSBTAP00000014556/1-1327 SSSIKQRISS FETFSSAHPP DRGAQRLSLQ ASSSSGEAAE LPRKQEGERA bmy_07518T0/1-1216 SSSIKQRISS FETFGSSHRP DKGAQRLSLQ PSSSSGEAAK PPGKQEGGRA BACU016035/1-1411 SSSIKQRISS FETFGSSHRP DKGAQRLSLQ PSSSSGEAAK PPGKQEGGQA 1001 1050 ENSTTRP00000013805/1-1216 S---GLLGRG APPAVEQQWP EPEQLPRASL AALEASDPGV PESPPPGQQP ENSP00000302935/1-1332 S---GLLGRG AAPTLVPQQP E-QVLSSGSP AASEARDPGV SESPPPGRQP ENSBTAP00000014556/1-1327 S---GPSGQG APPTMEQQRP EPEQLPPASP ATSEASNPGV SGHPPLEQQP bmy_07518T0/1-1216 SQAPGALGRG APPTVNQQRP DPEQLPPASL AALEASDPGV PASPPPGQQP BACU016035/1-1411 SRAPGVSGRG APPTVKQQRP EPEQLPPASL AALEASDTGV PASPPPGQQP 1051 1100 ENSTTRP00000013805/1-1216 GQKTLSSDPD PLSRLLATQM EGSRGPGVKI PSQRSRSFPL SRTQSCEMKP ENSP00000302935/1-1332 NQKTLPPGPD PLLRLLSTQA EESQGPVLKM PSQRARSFPL TRSQSCETKL ENSBTAP00000014556/1-1327 GQKTLSSDPD PLSRLLATQM EGPRGPVVKM PSQRARSFPL SRTQSCEMKP bmy_07518T0/1-1216 GQKTLSSDPD PLSRLLVTQM EGSRGPGVKI PSQRARSFPL SRTQSCEMKP BACU016035/1-1411 GQKTLSSDPD PLSRLLATQM EGSRGPGVKM PSQRARSFPL SRTQSCEMKP 1101 1150 ENSTTRP00000013805/1-1216 LDEKTSKLYS ISSQVSSAVM KSLLCLPSSV C---QTCS-Q EGASSPMASS ENSP00000302935/1-1332 LDEKTSKLYS ISSQVSSAVM KSLLCLPSSI SCAQTPCIPK EGASPTSSSN ENSBTAP00000014556/1-1327 LDEKTSKLYS ISSQVSSAVM KSLLCLPSSL SFGQIPCSPK EGVLPPTAFS bmy_07518T0/1-1216 LDEKTSKLYS ISSQVSSAVM KSLLCLPSSV SCXQTSCSPK EGASPPTASS BACU016035/1-1411 LDEKTSKLYS ISSQVSSAVM KSLLCLPSSV SCGQTSCSPK EGASPPTASS 1151 1200 ENSTTRP00000013805/1-1216 EDPAAIXXXX XXXXXXXXXX XXLSELREYT EGLGEPTEAD GSDHGTSQSG ENSP00000302935/1-1332 EDSAA-NGSA ETSALDTGFS LNLSELREYT EGLTEAKEDD DGDHSSLQSG ENSBTAP00000014556/1-1327 EDPT--NSSA EASASDTSFS LNLSELREYT EGLSESTEAN DCDHCTSQPG bmy_07518T0/1-1216 EDPAA-NSSA EAPASDTGFS LN-------- ---------- ---------- BACU016035/1-1411 EDPAA-NSSA EAPASDTGFS LNLSELREYT EGLGEPTEAD DSDHCAPQSG 1201 1250 ENSTTRP00000013805/1-1216 QSVISLLSSE ELKKLIEEVK VLDEATLKQL DNIHVTILHK EEGAGLGFTL ENSP00000302935/1-1332 QSVISLLSSE ELKKLIEEVK VLDEATLKQL DGIHVTILHK EEGAGLGFSL ENSBTAP00000014556/1-1327 QSVISLLSTE ELKKLIEEVK VLDEATLKQL DSIHVTILHK EEGAGLGFSL bmy_07518T0/1-1216 --------SE ELKKLIEEVK VLDEATLKQL DNIHVTVLHK EEGAGLGFSL BACU016035/1-1411 QSVISLLSSE ELKKLIEEVK VLDEATLKQL DNIHVTILHK EEGAGLGFSL 1251 1300 ENSTTRP00000013805/1-1216 AGGADLENKV ITVHRVFPNG LASQEGTIQK GNEVLSINGK SLKGTTHNDA ENSP00000302935/1-1332 AGGADLENKV ITVHRVFPNG LASQEGTIQK GNEVLSINGK SLKGTTHHDA ENSBTAP00000014556/1-1327 AGGADLENKV ITVHRVFPNG LASQEGTIQK GNEVLSINGK SLKGATHNDA bmy_07518T0/1-1216 AGGADLENKV ITVHRVFPNG LASQEGTIQK GNEVLSINGK SLKGATHNDA BACU016035/1-1411 AGGADLENKV ITVHRVFPNG LASQEGTIQK GNEVLSINGK SLKGATHNDA 1301 1350 ENSTTRP00000013805/1-1216 LAILRQARDP RQAVIVTRKP TVETTPDLNS STDSAASASV AGDVSIDSSA ENSP00000302935/1-1332 LAILRQAREP RQAVIVTRKL TPEAMPDLNS STDSAASASA ASDVSVESTA ENSBTAP00000014556/1-1327 LAILRQAREP RQAVIVTRRP TLEATTDLNS STDSSGSASV TSDVSIES-A bmy_07518T0/1-1216 LAILRQARDP RQAVIVTRKP TPETTPDLNS STDSAASASV ASDVSIDSTA BACU016035/1-1411 LAILRQARDP RQAVIVTRKP TPETTPDLNS STDSAASASV ASDVSIDSTA 1351 1400 ENSTTRP00000013805/1-1216 EATVCTVTLE KTSAGLGFSL EGGKGSLQGD KPLTVNRIFK GAASEQSETV ENSP00000302935/1-1332 EATVCTVTLE KMSAGLGFSL EGGKGSLHGD KPLTINRIFK GAASEQSETV ENSBTAP00000014556/1-1327 EATVCTVTLE KTSAGLGFSL EGGKGSLHGD KPLTVNRIFK GLASEQSDTV bmy_07518T0/1-1216 EATVCTVTLE KTSAGLGFSL EGGKGSLQGD KPLTVNRIFK GAVCVCLSAF BACU016035/1-1411 EATVCTVTLE KTSAGLGFSL EGGKGSLQGD KPLTVNRIFK GAASEQSETV 1401 1450 ENSTTRP00000013805/1-1216 QPGDEVLQLA GTAMQGLTRF EAWNIIKALP DGPVTIVLRR KSLQSKGTTA ENSP00000302935/1-1332 QPGDEILQLG GTAMQGLTRF EAWNIIKALP DGPVTIVIRR KSLQSKETTA ENSBTAP00000014556/1-1327 QPGDEIVHLA GTAMQGLTRF EAWNIIKALP DGPVTIVLRR KSLQSKGTPA bmy_07518T0/1-1216 APVAGVRPGP PKASEHLLGH VGFPQPQALL GGRQAC---- ---------- BACU016035/1-1411 QPGDEILHLA STAVQGLTRF EAWNIIKALP DGPVTIVLRR KSPRSKGTTA 1451 1500 ENSTTRP00000013805/1-1216 AGDP ENSP00000302935/1-1332 AGDS ENSBTAP00000014556/1-1327 AGDP bmy_07518T0/1-1216 ---- BACU016035/1-1411 AGDP