KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:17 2014 Check: 00 .. Name: ENSP00000216271/1-669 Len: 741 Check: 7810 Weight: 1.00 Name: ENSBTAP00000014602/1-670 Len: 741 Check: 3559 Weight: 1.00 Name: bmy_14625T0/1-735 Len: 741 Check: 5126 Weight: 1.00 Name: BACU019929/1-665 Len: 741 Check: 9075 Weight: 1.00 Name: ENSTTRP00000011664/1-671 Len: 741 Check: 1688 Weight: 1.00 // 1 50 ENSP00000216271/1-669 MGTALVYHED MTATRLLWDD PECEIERPER LTAALDRLRQ RGLEQRCLRL ENSBTAP00000014602/1-670 MGTALVYHED MTATRLLWDD PECEIECPER LTTALERLQQ HGLKQRCLQL bmy_14625T0/1-735 MGTALVYHED MTAARLLWDD PECEIECPER LTTALERLQQ RGLEQRCLRL BACU019929/1-665 -GTALVYHED MTAARLLWDD PECEIECPER LTTALERLQQ RGLEQRCLRL ENSTTRP00000011664/1-671 -GTALVYHED MTAARLLWDD PECEIECPER LTTALERLQQ RGLEQRCLQL 51 100 ENSP00000216271/1-669 SAREASEEEL GLVHSPEYVS LVRETQVLGK EELQALSGQF DAIYFHPSTF ENSBTAP00000014602/1-670 VAREASEAEL GLVHSPEYVA LLQGTQALGT RELQALSKEY DAVYLHPSTF bmy_14625T0/1-735 AAREASEAEL GLVHSPEYVA LLQGTQALGT EELQTLSGQY DAVYFHPSTF BACU019929/1-665 AAREASEAEL GLVHSPEYVA LLQGTQALGT GELQTLSGQY DAVYFHPSTF ENSTTRP00000011664/1-671 AAREASEAEL GLVHSPEYVA LVRGTQALGT GELQTLSGQY DAVYFHPSTF 101 150 ENSP00000216271/1-669 HCARLAAGAG LQLVDAVLTG AVQNGLALVR PPGHHGQRAA ANGFCVFNNV ENSBTAP00000014602/1-670 HCARLAVGAA LQLVDAVLTG AVRNGLALVR PPGHHSQRAT ANGFCVFNNV bmy_14625T0/1-735 HCARLAAGAA LQLVDAVLAG AVRNGLALVR PPGHHSQRAA ANGFCVFNNV BACU019929/1-665 HCARLAAGAA LQLVDAVLAG AVRNGLALVR PPGHHSQRAA ANGFCVFNNV ENSTTRP00000011664/1-671 HCARLAVGAV LQLVDAVLAG AVRNGLALVR PPGHHSQRAA ANGFCVFNNV 151 200 ENSP00000216271/1-669 AIAAAHAKQK HGLHRILVVD WDVHHGQGIQ YLFEDDPSVL YFSWHRYEHG ENSBTAP00000014602/1-670 AIAAKHAQQK HGLRRILIVD WDVHHGQGIQ YIFEDDPSVL YFSWHRYEHG bmy_14625T0/1-735 AIAAKHAQRQ HGLHRILIVD WDVHHGQGIQ YIFEDDPSVL YFSWHRYEHG BACU019929/1-665 AIAAKHAQRQ HGLHRILIVD WDVHHGQGIQ YIFEDDPSVL YFSWHRYEHG ENSTTRP00000011664/1-671 AIAARHAQRQ HGLHRILIVD WDVHHGQGIQ YIFEDDPSVL YFSWHRYEHG 201 250 ENSP00000216271/1-669 RFWPFLRESD ADAVGRGQGL GFTVNLPWNQ VGMGNADYVA AFLHLLLPLA ENSBTAP00000014602/1-670 HFWPCLRESD ADAVGRGRGL GFTVNLPWNQ VGMGNADYVA AFLHVLLPLA bmy_14625T0/1-735 RFWPYLRESD ADAVGQGPGL GFTVNLPWNQ VGMGNADYVA AFLHVLLPVA BACU019929/1-665 RFWPYLRESD ADAVGQGPGL GFTVNLPWNQ VGMGNADYVA AFLHVLLPVA ENSTTRP00000011664/1-671 RFWPYLRESD ADAVGQGPGL GFTVNLPWNQ VGMGNADYVA AFLHVLLPVA 251 300 ENSP00000216271/1-669 FEFDPELVLV SAGFDSAIGD PEGQMQATPE CFAHLTQLLQ VLAGGRVCAV ENSBTAP00000014602/1-670 FEFDPELVLV SAGFDSAIGD PEGQMLATPE CFAHLTHLLQ VLAGGRVCAV bmy_14625T0/1-735 FEFDPELVLV SAGFDSAIGD PEGQMQATPE CFAHLTQLLQ VLAGGRVCAV BACU019929/1-665 FEFNPELVLV SAGFDSAIGD PEGQMQATPE CFAHLTQLLQ MLAGGRVCAV ENSTTRP00000011664/1-671 FEFNPELVLV SAGFDSAIGD PEGQMQATPE CFAHLTQLLQ VLAGGRVCAV 301 350 ENSP00000216271/1-669 LE------GG YHLESLAESV CMTVQTLLGD PA-------- ---------- ENSBTAP00000014602/1-670 LE------GG YHLESLSQSV CMMVRALLGD PA-------- ---------- bmy_14625T0/1-735 LEVIVASWEG W----LPPGV TLAVRVHDGA SAAGRPCPAP VGAHGAACQV BACU019929/1-665 LE------GG YHLESLSQSV CMMVQALLGD PA-------- ---------- ENSTTRP00000011664/1-671 LE------GG YHLESLSQSV CMMVQALLGD PA-------- ---------- 351 400 ENSP00000216271/1-669 ---------- -----PPLSG PMAPCQSALE SIQSARAAQA PHWKSLQQQ- ENSBTAP00000014602/1-670 ---------- -----LPLSG PMEPHGSALE SLQCVRAAQA PHWVSLQQQ- bmy_14625T0/1-735 RGAGRRRVGR ARGGRPGLTD PASPR-SALE SIQSVRVAQA PHWMSLQQQG BACU019929/1-665 ---------- -----PPLSG PMVPHASALE SIQSVQVAQA PHWMSLQQQ- ENSTTRP00000011664/1-671 ---------- -----PPLSG PMVPHGSALE SIQSVRVAQA PHWMSLQQQ- 401 450 ENSP00000216271/1-669 ---------- ---------- ---DVTAVPM SPSSHSPEGR PPPL-LPGGP ENSBTAP00000014602/1-670 ---------- ---------- ---GAAPV-L SPGTPCPEGR PSPLPL-GEP bmy_14625T0/1-735 QRGLGRDGAS GSHAVAVTLN QPLGVAPV-L SPSPRFPEGR PSPLLLPRGP BACU019929/1-665 ---------- ---------- ---GVAPV-L SPCPRSPEGR PSPLLLPGGP ENSTTRP00000011664/1-671 ---------- ---------- ---GVAPV-L SPSPYSPEGR PSSLLLTGRP 451 500 ENSP00000216271/1-669 VCKAAAS--- -APSSLLDQP CLCPAPSVRT AVALTTPDIT LVLPPDVIQQ ENSBTAP00000014602/1-670 QFKAVVTQAA AALSSLLDQL RLHPTPPVRV AVALIAPDTG LALPPGVLCE bmy_14625T0/1-735 EFKAAATQDV AALSSLLDQM RLNPTPPVRT AVALTAPDAA LALPSDVLCE BACU019929/1-665 EFKAAATQDV AALSSLLDQL RLNPTPPVRT AVALTAPDAA LALPSDVLCE ENSTTRP00000011664/1-671 EFKAAATQDV AALSSLLDQP RLNPTPPVRT AVALAAPDAA LALPSDVLCE 501 550 ENSP00000216271/1-669 EASALREETE AWARPHESLA REEALTALGK LLYLLDGMLD GQVNSGIAAT ENSBTAP00000014602/1-670 EGSLPQEETQ AWARPHEALA QDGALTALGK VLYLLDRILD GQVSSGMAAT bmy_14625T0/1-735 EGSAPQEETQ AWARPHEALA QDRALTALGK VLYLLDRILD GQVSTGIAVT BACU019929/1-665 EGSAPQEETQ AWARPHEALA QDRALTALGK VLYLLDRILD GQVSSGIAVT ENSTTRP00000011664/1-671 EGSAPQEETQ AWARPHEALA QDRALTALGK VLYLLDRILD GQVSSGVAVT 551 600 ENSP00000216271/1-669 PASAAAATLD VAVRRGLSHG AQRLLCVALG QLDRPPDLAH DGRSLWLNIR ENSBTAP00000014602/1-670 PVPAAAATLD VAVRYGLSHG AQRLLCVAVG QLDRPPGLTD DGRNLWLNIG bmy_14625T0/1-735 PASAAAATLD VAIRCGLSHG AQRLLCLAVG QLDRPPDLTD DGRNLWLNIG BACU019929/1-665 PASAAAATLD VAIRCGLSHG AQRLLCLAVG QLDRPPDLTD DGTNLWLNIG ENSTTRP00000011664/1-671 PACAAAATLD VAIRCGLSHG AQRLLCLAVG QLDRPPDLTD DGRNLWLNIG 601 650 ENSP00000216271/1-669 GKEAAALSMF HVSTPLPVMT GGFLSCILGL VLPLAYGFQP DLVLVALGPG ENSBTAP00000014602/1-670 GEEAAAPSMF HVSVPLPVTT GGFLSCALAL VLPLAYSFQP DLVLVALGPA bmy_14625T0/1-735 GKEAAALSMF HVSVPLPGTT GGFLSCVLAL VLPLAYSFQP NLVLVVLGPA BACU019929/1-665 GKEAAALSMF HVSVPLPGTT GGFLSCVLAL VLPLAYSFQP DLVLVALGPA ENSTTRP00000011664/1-671 GKEAAALSMF HVSVPLPGTT GGFLSCVLAL VLPLAYSFQP DLVLVALGPA 651 700 ENSP00000216271/1-669 HGLQGPHAAL LAAMLRGLAG GRVLALLEEN STPQLAGILA RVLNGEAPPS ENSBTAP00000014602/1-670 HGLRDPQAAL LAALLRGPAG GRVFALVDEE STPQLATVLA RVLNGEAPPS bmy_14625T0/1-735 HGLRDPQAAL LAALLRGPAG GRVLALVDEE STPQLAVVLA RVLHGEAAPS BACU019929/1-665 HGLRDPQAAL LAALLRGPAG GRVLVLVDEE STPQLAVVLA RVLHGEAAPS ENSTTRP00000011664/1-671 HGLRDPQAAL LAALLRGPAG GRVLALVDEE STPQLVVVLA RVLHGEAAPS 701 750 ENSP00000216271/1-669 LGPSSVASPE DVQALMYLRG QLEPQWKMLQ CHPHLVA--- - ENSBTAP00000014602/1-670 LGPFSMAAPE DTQALMYLRG RLEPRWKMLQ VAAPH----- - bmy_14625T0/1-735 LGPFSMASPE EMQALMQLRG QLEPRWKMLQ VASEAGGPGS G BACU019929/1-665 LGPFSMASPE EVQALMQLRG QLEPRWKMLQ ---------- - ENSTTRP00000011664/1-671 LGPFSMASPE DVQALMQLRG QLEPRWKMLQ CCNLVA---- -