KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:18 2014 Check: 00 .. Name: ENSP00000312455/1-480 Len: 511 Check: 4461 Weight: 1.00 Name: ENSBTAP00000014607/1-484 Len: 511 Check: 7512 Weight: 1.00 Name: ENSTTRP00000007362/1-482 Len: 511 Check: 7386 Weight: 1.00 Name: bmy_17599T0/1-300 Len: 511 Check: 7349 Weight: 1.00 Name: BACU014126/1-241 Len: 511 Check: 8804 Weight: 1.00 // 1 50 ENSP00000312455/1-480 ---------- ---------- -------MSA EVIHQVEEAL DTDEKEMLLF ENSBTAP00000014607/1-484 ---------- ---------- -------MSA EVIHQVEEAL DEEEKDTLLF ENSTTRP00000007362/1-482 ---------- ---------- -------MSA EVIHQVEEAL DEDEKELLLF bmy_17599T0/1-300 MQSVASWPSV DWTRLFLLLF LGMTLYRMSA EVIHQVEEAL DEDEKEMLLF BACU014126/1-241 MQSVASWPSV DWTRLFLLLF LGMTLYRMSA EVIHQVEEAL DEDEKEMLLF 51 100 ENSP00000312455/1-480 LCRDVAIDVV PPNVRDLLDI LRERGKLSVG DLAELLYRVR RFDLLKRILK ENSBTAP00000014607/1-484 LCRDVAADVV PLNVRDLLDI LRERGKLSSV SLAELLYRVR RFDLLKRVLN ENSTTRP00000007362/1-482 LCRDVAADVV PLIVRDLLDV LRERGKLSFV SLAELLYRVR RFDLLKRVLK bmy_17599T0/1-300 LCRDVAADVV PLNVRDLLDV LRERGKLSSV SLAELLYRVR RFDLLKRVLK BACU014126/1-241 LCRDVAADVV PLNVRDLLDV LRERGKLSSV SLAELLYRVR RFDLLKRVLK 101 150 ENSP00000312455/1-480 MDRKAVETHL LRNPHLVSDY RVLMAEIGED LDKSDVSSLI FLMKDYMGRG ENSBTAP00000014607/1-484 MDTPTVEALL RKHPHLISDY RVLMMEIGED LDKSDVSSLM FLMRDYTGRS ENSTTRP00000007362/1-482 MDRPTAEALL RRHPHLISDY RVLLMEIGEG LDKSDVSSLI FLMRDYMGRG bmy_17599T0/1-300 MDRPTAEALL HRHPHLISDY RVLLMEIGEG LDKSDVSSLI FLMRDYMGRG BACU014126/1-241 MDRLTAEALL HRHPHLISDY RVLLMEIGEG LDKSDVSSLI FLMRDYMGRG 151 200 ENSP00000312455/1-480 KISKEKSFLD LVVELEKLNL VAPDQLDLLE KCLKNIHRID LKTKIQKYKQ ENSBTAP00000014607/1-484 KIAKDKSFLD LVVELEKLNL VAPDQLNLLE ESLRNINRID LKTKIQKYKQ ENSTTRP00000007362/1-482 KIAKDKSFLD LVIELEKLNL VAPDHLDLLE KCLRNIHRID LKTKIQKYKQ bmy_17599T0/1-300 KIAKDKSFLD LVIELEKLNL VAPDHLDLLE KCLRNIHRID LKTKIQKYKQ BACU014126/1-241 KIAKDKSFLD LVIELEKLNL VAPDHLDLLE KCLRNIHRID LKTKIQKYKQ 201 250 ENSP00000312455/1-480 SVQGAGTSYR NVLQAAIQK- SLKDPSNNFR LHNGRSKEQR L-KEQLGAQQ ENSBTAP00000014607/1-484 SAQGAETNYV NARQASLPNL SVKDPSYNLR LQNGRSKEQR LMMGPPDIQR ENSTTRP00000007362/1-482 SAQGVETNYV NALQASLPNL SVKDPSYNLR FQNGRSKEHR LMTGQRDIQR bmy_17599T0/1-300 SAQGVETNYV NALQASLPNL SIKDPSYNLR LQNGRSKEHR LMMGQPDIQR BACU014126/1-241 SAQGVETNYV NALQASLPNL SIKDPSYNLR VS-------- ---------- 251 300 ENSP00000312455/1-480 EPVKKSIQES EAFLPQSIPE ERYKMKSKPL GICLIIDCIG NETELLRDTF ENSBTAP00000014607/1-484 EPVKRPIQES GAFLPQHIVE ERYKMQSKPL GICLIIDCIG NDTDILRDTF ENSTTRP00000007362/1-482 EPVKTSIQES EAFLPHHILE ERYKMQSEPL GICLIIDCIG NDTDILEETF bmy_17599T0/1-300 EPVKTSIQES EAFLPQHVLE ERYKMQSKPL GICLIIDCIG NDT------- BACU014126/1-241 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000312455/1-480 TSLGYEVQKF LHLSMHGISQ ILGQFACMPE HRDYDSFVCV LVSRGGSQSV ENSBTAP00000014607/1-484 TSLGYEVKHF LYLTVKDITN ILRQVAQMPQ HQDSDSFACI LVSRGGSQSV ENSTTRP00000007362/1-482 TALGYEVKRF LHLTVENIMH ILGQVAHMPQ HQDYDSFVCI LVSRGGSQSV bmy_17599T0/1-300 ---------- ---------- ---------- ---------- ---------- BACU014126/1-241 ---------- ---------- -LEQMCGIPA ---------- ---------- 351 400 ENSP00000312455/1-480 YGVDQTHSGL PLHHIRRMFM GDSCPYLAGK PKMFFIQNYV VSEGQLEDSS ENSBTAP00000014607/1-484 FGVDQTHSGV PLDHIRRMFM ADTCPSLSGK PKLFFIQSYV KSEGQLEDSS ENSTTRP00000007362/1-482 FGVDQTHSGV PLDHIRRMFM ADACPSLSGK PKVFFIQNYV TSESQLEDSS bmy_17599T0/1-300 ---------- ---------- ---------- ---------- ---------- BACU014126/1-241 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000312455/1-480 LLEVDGPAMK NVEFKAQKRG LCT--VHREA DFFWSLCTAD MSLLEQSHSS ENSBTAP00000014607/1-484 FLEVDGPSVK SADSKARQPG PYQDLIHREA DFFWSLCKAD VSLLEGPSSS ENSTTRP00000007362/1-482 FLEVDRPSVK SAESKARQPG ACV--IHREA DFFWSLCKAD VSLLERSSPS bmy_17599T0/1-300 ---------- ---------G RCE------- ------CSR- ---------- BACU014126/1-241 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000312455/1-480 PSLYLQCLSQ KLRQERKRPL LDLHIELNGY MYDWNSRVSA KEKYYVWLQH ENSBTAP00000014607/1-484 PSLYLKCLSQ KLWKERKHSL LELHTELNRL VYDWNSKVSA KERYYVWLQH ENSTTRP00000007362/1-482 PSLYLKCLSQ KLGKERKHSL LELHIELNSK VYDWNSRVSA KERYCVWLQH bmy_17599T0/1-300 ---------- ---------- ---------- ---------- ---------- BACU014126/1-241 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000312455/1-480 TLRKKLILSY T ENSBTAP00000014607/1-484 TLRKNLFLSH K ENSTTRP00000007362/1-482 TLRKKLILSC K bmy_17599T0/1-300 ---------- - BACU014126/1-241 ---------- -