KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:21 2014 Check: 00 .. Name: ENSP00000269033/1-1423 Len: 1450 Check: 1882 Weight: 1.00 Name: ENSBTAP00000014625/1-1373 Len: 1450 Check: 8745 Weight: 1.00 Name: ENSTTRP00000015484/1-1391 Len: 1450 Check: 1940 Weight: 1.00 Name: bmy_00140T0/1-1347 Len: 1450 Check: 8693 Weight: 1.00 Name: BACU010483/1-1422 Len: 1450 Check: 4395 Weight: 1.00 // 1 50 ENSP00000269033/1-1423 --MALVTVQR SPTPSTTSSP CAS-EADSGE EECRSQP--- ---------- ENSBTAP00000014625/1-1373 ---------- -------IFT SSH-EVGTLE EERENNP--- ---------- ENSTTRP00000015484/1-1391 ---------- ---------- ----EADSGE EECRSQP--- ---------- bmy_00140T0/1-1347 ---------- ---------- --------MK EENKTKE--- ---------- BACU010483/1-1422 MPASLCSLES GPLWVGQSNY CRRLKVTDTE SKGQNGPMWD GSIEFTGTFL 51 100 ENSP00000269033/1-1423 ---RS----I SESFLTVKGA ALFLPRGNGS STPRISHRRN KHAGDLQQHL ENSBTAP00000014625/1-1373 ---KFFPCSI SESFLTVKGA ALFLPRGNGS STPRVSHRRN KHAGDLQQHL ENSTTRP00000015484/1-1391 ---RS----I SESFLTVKGA ALFLPRGNGS STPRISHRRN KHAGDLQQHL bmy_00140T0/1-1347 ---ET----- ---------- ----PR---- ---RVA---- --LEEFQIEI BACU010483/1-1422 FLGQALDNCI SESFLTVKGA ALFLPRGNGS STPRISHRRN KHAGDLQQHL 101 150 ENSP00000269033/1-1423 QAMFILLRPE DNIRLAVRLE STYQNRTRYM VVVSTNGRQD TEESIVLGMD ENSBTAP00000014625/1-1373 QAMFILLRPE DNIRLAVRLE STYQNRTRYM VVVSTNGRQD TEESIVLGMD ENSTTRP00000015484/1-1391 QAMFILLRPE DNIRLAVRLE STYQNRTRYM VVVSTNGRQD TEESIVLGMD bmy_00140T0/1-1347 SIKFV----T NFLSQAVRLE STYQNRTRYM VVVSTNGRQD TEESIVLGMD BACU010483/1-1422 QAMFILLRPE DNIRLAVRLE STYQNRTRYM VVVSTNGRQD TEESIVLGMD 151 200 ENSP00000269033/1-1423 FSSNDSSTCT MGLVLPLWSD TLIHLDGDGG FSVSTDNRVH IFKPVSVQAM ENSBTAP00000014625/1-1373 FSSNDSSTCT MGLVLPLWSD TLIHLDGDGG FSVSTDNRVH IFKPVSVQAM ENSTTRP00000015484/1-1391 ------STCT MGLVLPLWSD TLIHLDGDGG FSVSTDNRVH IFKPVSVQAM bmy_00140T0/1-1347 FSSNDSSTCT MGLVLPLWSD TLIHLDGDGG FSVSTDNRVH IFKPVSVQAM BACU010483/1-1422 FSSNDS---- ---------- ---------G FSVSTDNRVH IFKPVSVQAM 201 250 ENSP00000269033/1-1423 WSALQSLHKA CEVARAHNYY PGSLFLTWVS YYESHINSDQ SSVNEWNAMQ ENSBTAP00000014625/1-1373 WSALQSLHKA CEVARMHNYY PGSLFLTWVS YYESHINSDQ SSVNEWNAMQ ENSTTRP00000015484/1-1391 WSALQSLHKA CEVARMHNYY PGSLFLTWVS YYESHINSDQ SSVNEWNAMQ bmy_00140T0/1-1347 WSALQSLHKA CEVARMHNYY PGSLFLTWVS YYESHINSDQ SSVNEWNAMQ BACU010483/1-1422 WSALQSLHKA CEVARMHNYY PGSLFLTWVS YYESHINSDQ SSVNEWNAMQ 251 300 ENSP00000269033/1-1423 DVQSHRPDSP ALFTDIPTER ERTERLIKTK LREIMMQKDL ENITSKEIRT ENSBTAP00000014625/1-1373 DVQSHRPDSP ALFTDIPTER ERTERLIKTR LREIMMQKDL ENITSKEIRT ENSTTRP00000015484/1-1391 DVQSHRPDSP ALFTDIPTER ERTERLIKTK LREIMMQKDL ENITSKEIRT bmy_00140T0/1-1347 DVQSHRPDSP ALFTDIPTER ERTERLIKTK LREIMMQKDL ENITSKEIRT BACU010483/1-1422 DVQSHRPDSP ALFTDIPTER ERTERLIKTK LREIMMQKDL ENITSKEIRT 301 350 ENSP00000269033/1-1423 ELEMQMVCNL REFKEFIDNE MIVILGQMDS PTQIFEHVFL GSEWNASNLE ENSBTAP00000014625/1-1373 ELEMQMVCNL REFKEFIDNE MIVILGQMDS PTQIFEHVFL GSEWNASNLE ENSTTRP00000015484/1-1391 ELEMQMVCNL REFKEFIDNE MIVILGQMDS PTQIFEHVFL XXXXXXXXXX bmy_00140T0/1-1347 ELEMQMVCNL REFKEFIDNE MI-------- ---------- GSEWNASNLE BACU010483/1-1422 ELEMQMVCNL REFKEFIDNE MIVILGQMDS PTQIFEHVFL GSEWNASNLE 351 400 ENSP00000269033/1-1423 DLQNRGVRYI LNVTREIDNF FPGVFEYHNI RVYDEEATDL LAYWNDTYKF ENSBTAP00000014625/1-1373 DLQNRGVRYI LNVTREIDNF FPGVFEYHNI RVYDEEATDL LAYWNDTYKF ENSTTRP00000015484/1-1391 XXXXXXVRYI LNVTREIDNF FPGVFEYHNI RVYDEEATDL LAYWNDTYKF bmy_00140T0/1-1347 DLQNRGVRYI LNVTREIDNF FPGVFEYHNI RVYDEEATDL LAYWNDTYKF BACU010483/1-1422 DLQNRGVRYI LNVTREIDNF FPGVFEYHNI RVYDEEATDL LAYWNDTYKF 401 450 ENSP00000269033/1-1423 ISKAKKHGSK CLVHCKMGVS RSASTVIAYA MKEYGWNLDR AYDYVKERRT ENSBTAP00000014625/1-1373 ISKAKKHGSK CLVHCKMGVS RSASTVIAYA MKEYGWNLDR AYDYVKERRT ENSTTRP00000015484/1-1391 ISKAKKHGSK CLVHCKMGVS RSASTVIAYA MKEYGWNLDR AYDYVKERRT bmy_00140T0/1-1347 ISKAKKHGSK CLVHCKMGVS RSASTVIAYA MKEYGWNLDR AYDYVKERRT BACU010483/1-1422 ISKAKKHGSK CLVHCKMGVS RSASTVIAYA MKEYGWNLDR AYDYVKERRT 451 500 ENSP00000269033/1-1423 VTKPNPSFMR QLEEYQGILL ASKQRHNKLW RSHSDSDLSD HHEPICKPGL ENSBTAP00000014625/1-1373 VTKPNPSFMR QLEEYQGILL ASKQRHNKLW RSHSDSDLSD HHEPICKPGL ENSTTRP00000015484/1-1391 VTKPNPSFMR QLEEYQGILL ASKQRHNKLW RSHSDSDLSD HHEPICKAGL bmy_00140T0/1-1347 VTKPNPSFMR QLEEYQGILL ASKQRHNKLW RSHSDSDLSD HHEPICKAGL BACU010483/1-1422 VTKPNPSFMR QLEEYQGILL ASKQRHNKLW RSHSDSDLSD HHEPICKAGL 501 550 ENSP00000269033/1-1423 ELNKKDITTS ADQIAEVKTM ESHPPIPPVF VEHMVPQDAN QKGLCTKERM ENSBTAP00000014625/1-1373 ELNKKEITTS ADQIAEVKTM ESHPPIPPVF VEHVVPQDEN QKALCTKERM ENSTTRP00000015484/1-1391 ELNKKEITTS ADQIAEVKTM ESHPPIPPVF VEHVVPQDEN QKGLCTKERM bmy_00140T0/1-1347 ELNKKEITTS ADQIAEVKTM ESHPPIPPVF VEHVVPQDEN QKGLCTKERM BACU010483/1-1422 ELNKKEITTS ADQIAEVKTM ESHPPIPPVF VEHVVPQDEN QKGLCTKERM 551 600 ENSP00000269033/1-1423 ICLEFTSREF HAGQIEDELN LNDINGCSSG CCLNESKFPL DNCHASKALI ENSBTAP00000014625/1-1373 ICLEFTSQEF HAGQIEDELN LNDINGCSSG CCLNEPKFPL DNCHASKALI ENSTTRP00000015484/1-1391 ICLEFTSREF HAGQIEDELN LNDINGCSSG CCLNESKFPL DNCHASKALI bmy_00140T0/1-1347 ICLEFTSREF HAGQIEDELN LNDINGCSSG CCLNESKFPL DNCHASKALI BACU010483/1-1422 ICLEFTSREF HAGQIEDELN LNDINGCSSG CCLNESKFPL DNCHASKALI 601 650 ENSP00000269033/1-1423 QPGHVPEMAN KFPDLTVEDL ETDALKADMN VHLLPMEELT SPLKDPPMSP ENSBTAP00000014625/1-1373 QPGKDPEMAH KFPDLTVEDL ETDALKADMN VHLLPMEELT SRLKDLPMSP ENSTTRP00000015484/1-1391 QPGQDPEMAN KFPDLTVEDL ETDALKADMN VHLLPMEELT SRLKDLPMSP bmy_00140T0/1-1347 QPGQDPEMAN KFPDLTVEDL ETDALKADMN VHLLPMEELT SRLKDLPMSP BACU010483/1-1422 QPGQDPEMAN KFPDLTVEDL ETDALKADMN VHLLPMEELT SRLKDLPMSP 651 700 ENSP00000269033/1-1423 DPESPSPQPS CQTEISDFST DRIDFFSALE KFVELSQETR SRSFSHSRME ENSBTAP00000014625/1-1373 DPESPSPQPS CQATVSDFSG DRIDFFSALE KFVELSQETR SRSFSHSRME ENSTTRP00000015484/1-1391 DPDSPSPQPS CQAEVSDFST DRIDFFSALE KFVELSQETR ARSFSHSRME bmy_00140T0/1-1347 DADSPSPQPS CQAEVSDFST DRIDFFSALE KFVELSQETR SRSFSHSRME BACU010483/1-1422 DADSPSPQPS CQAEVSDFST DRIDFFSALE KFVELSQETR SRSFSHSRME 701 750 ENSP00000269033/1-1423 ELGGGRNESC RLSVVEVAPS KVTADDQRSS SLSNTPHASE ESSMDEEQSK ENSBTAP00000014625/1-1373 EVGGGRNESC RLSVVEAAPS EATTDDQRSS SLSNTPHASE ESSVDEEQSK ENSTTRP00000015484/1-1391 ELGGGRSESC RLSVVEVAPS EATADDQRSS SLSNTPHASE ESSIDEEQSK bmy_00140T0/1-1347 ELGGGRSESC RLSVVEVAPS EATADDQRSS SLSNTPHASE ESSIDEEQSK BACU010483/1-1422 ELGGGRSESC RLSVVEVAPS EATADDQRSS SLSNTPHASE ESSIDEEQSK 751 800 ENSP00000269033/1-1423 AISELVSPDI FMQSHSENAI SVKEIVTEIE SISQGVGQIQ LKGDILPNPC ENSBTAP00000014625/1-1373 AISEQVSPDI FMQPHSENAM SVKEIVTEIE SISQGVGQIQ VKGDVLSNPC ENSTTRP00000015484/1-1391 AISELVSPDI FMQSHSENAI SVKEIVTEIE SISQGVGQIQ VKGDILAIPC bmy_00140T0/1-1347 AISELVSPDI FMQSHSENAI SVKEIVTEIE SISQGVGQIQ VKGDILSIPC BACU010483/1-1422 AISELVSPDI FMQSHSENAI SVKEIVTEIE SISQGVGQIQ VKGDILSIPC 801 850 ENSP00000269033/1-1423 HTPKKNSIHE LLLERAQTPE NKPGHMEQDE DSCTAQPELA KDSGMCNPEG ENSBTAP00000014625/1-1373 HTPKKHIVHE LPLERAQAAE NRPGNLEQSE GSCPAQPEPA KDSGKGDPEG ENSTTRP00000015484/1-1391 HTPKKHIVHE LPLERAQAAE NKPGNLEQSG VSCTAQPELA KDSGKWEPEG bmy_00140T0/1-1347 HTPKKHIVHE LPLERAQASE NKPGNLEQSE GSCTAQPELA KDSGKWEPEG BACU010483/1-1422 HTPKKHIVHE LPLERVQAAE NKPGNLEQSE GSCTAQPELA KDSGKWEPEG 851 900 ENSP00000269033/1-1423 CLTTHSSIAD LEEGEPAEGE QELQGSGMHP GAKWYPGSVR RATLEFEERL ENSBTAP00000014625/1-1373 CPGAHSSTAE VEEEEPVEGE QELWGPGMPP GAKWYPGSVR RATLEFEERL ENSTTRP00000015484/1-1391 CPVAHSSTTE LEEEEPAEGE PELWGPGMPP GAKWCPGSVR RATLEFEERL bmy_00140T0/1-1347 CPVAHSSTTE LEEEEPAEGE QELWGPGMPP GAKWYPGSVR RATLEFEERL BACU010483/1-1422 YPVAHSSTTE LEEEEPAEGE QELWGPGMPP GAKWYPGSVR RATLEFEERL 901 950 ENSP00000269033/1-1423 RQEQEHHGAA PTCTSLSTRK NSKND-SSVA DLAPKGKSDE APPEHSFVLK ENSBTAP00000014625/1-1373 RQEQEHHGAA PAGTSLSTRK NSKND-SSVA DLAAKGKSDE AAPELSYVPK ENSTTRP00000015484/1-1391 RQEQEQYGAA PACASLSTRK NSKNDSSSVA DVASKGRSDE ATLEHAFVPR bmy_00140T0/1-1347 RQEQEHHGAA AACTSLSTRK NSKNDSSSVA DLAPKGKSDE ATLEHSFVPK BACU010483/1-1422 RQEQEHHGAA AACTSSSTRK NSKNDSSSVA DLAPKGKSDE ATLEHSFVPK 951 1000 ENSP00000269033/1-1423 EPEMSKGKGK YSGSEAGSLS HSEQNATVPA PRVLEFDHLP DPQEGPGSDT ENSBTAP00000014625/1-1373 EPETGRGQGR CGGSESGSLL RPEQLAIVPA PELRESHPAP ATQDGP---- ENSTTRP00000015484/1-1391 EPETSKGKGK CSGSEAGSLP HSEQHAIVPA PELPESHPLP APQKCPGSGP bmy_00140T0/1-1347 EPEMSKGKGK CSGSEAGSLP HSEQHAIVPA PELLESHPLP APQKCPGSGP BACU010483/1-1422 EPEMSKGKGK CSGSEAGSLP HSEQHAIVPA PELLESHPLP APQKCPGSGP 1001 1050 ENSP00000269033/1-1423 GTQQEGVLKD LRTVIPYQES ETQAVPLPLP KRVEIIEYTH IVTSPNHTGP ENSBTAP00000014625/1-1373 --RHEGILRE PRTVVSGQGP ETPAAPAAFP KKIEIIEYTY TATSPDP-GP ENSTTRP00000015484/1-1391 RTQQEGVLKE QRTSVLCQGP ETPAVPLPLP KKIEIVEYTH TVTTPDH-GP bmy_00140T0/1-1347 RTQQEGVLKE QRTSVSCQGP ETPAVPLPLP KKIEIIEYTH TVTTPDH-GP BACU010483/1-1422 RTQQEGVLKE QRTSVSCQGP ETPAVPLPLP KKIEIIEYTH TVTTPNH-GP 1051 1100 ENSP00000269033/1-1423 GSEIATSEKS GEQGLRKVNM EKSVTVLCTL DENLNRTLDP NQVSLHPQVL ENSBTAP00000014625/1-1373 GWERASSEKS GAQGLRTVKV EETLTVLCAL DENLNRTLSP DQAPLHPRVL ENSTTRP00000015484/1-1391 EGETATSEKS GEQGLRKVKV EESVTVLCAL DENLNRTLSP DQASLHPRAL bmy_00140T0/1-1347 EGETATSEKG GEQGLRKVKV EESITVLCAL DENLNRTLSP DQASLHPRAL BACU010483/1-1422 EGETATGEKS GEQGLRKVKV EESITVLCAL DENLNRTLSP DQASLHPRAL 1101 1150 ENSP00000269033/1-1423 PLPHSSSP-- EHNRPTDHPT SILSSPEDRG SSLSTALETA APFVSHTTHL ENSBTAP00000014625/1-1373 PPPHSSSPQH EHSRPVDLP- PTLSSP---- ---------A APIVSPTTQP ENSTTRP00000015484/1-1391 PLPHSSSPEP EHGRPA-HPA PTLSSPGDGG NSPAAALETA APPVSHSAHV bmy_00140T0/1-1347 PLPHSSSPEH EHGRPT-HPA PTLSSPEDWG NSPAAALETA APFVSHSTHV BACU010483/1-1422 PLPHSSSPEH EHGRPA-HRA PTLSSPEDWG NSPAAALETA APFVSHSTRV 1151 1200 ENSP00000269033/1-1423 LSASLDYLHP QTMVHLEGFT EQSSTTD-EP SAEQVSWEES QESPLSSGSE ENSBTAP00000014625/1-1373 CGASPDHLHP QTVVHLEGFT GQSSTTDSEP STEQGSWEES QEGPLSRASE ENSTTRP00000015484/1-1391 LGASLAYLHP QTVVHLEGFT EQSSTTDNEP SAEKGSWEES QEGPLSRGSG bmy_00140T0/1-1347 LGASLAYLHP QTVVHLEGFT GQSSTTDNEP SAEKGSWEES QEGPLSRGSE BACU010483/1-1422 LGASLAYLRP QTVVHLEGFT GQSSTTDDEP SAEKGSWEES QEGPLSRGSE 1201 1250 ENSP00000269033/1-1423 VPYKDSQLSS ADLSLISKLG DNTGELQEKM DPLPVACRLP HSSSSENIKS ENSBTAP00000014625/1-1373 ---------- --------LG NNIGEQPEKL DPTSVAHQLP HSSSSDSIES ENSTTRP00000015484/1-1391 VPYQGSQVSS EDLCLISRLG DSVGEQQEKL DPSPVACQLP HSPSSDGIKG bmy_00140T0/1-1347 VPYQGSQLSS EDLCLISKLG DCVGEQQEKL DPSPVACQLP HSSSSDGIKG BACU010483/1-1422 MPYQGSQLSS EDLCLISKLG DSVGERQEKL DPSPVACQLP HSSSSDGIKG 1251 1300 ENSP00000269033/1-1423 LSHSPGVVKE RAKEIESRVV FQAGLTKPSQ MRRSASLAKL GYLDLCKDCL ENSBTAP00000014625/1-1373 PSQSPRVVKG RAKEIESRAT SQVGLPKPPQ MRRSASLAKL GYLDLCKDCS ENSTTRP00000015484/1-1391 LSHSPSGVKE RAKEIESREI SQVGLPKPSQ MRRSASLAKL GYLDLCKDCL bmy_00140T0/1-1347 LSHSPSGVKE RAKEIESQAI SQVVLPKPSQ MRRSASLAKL GYLDLCKDCL BACU010483/1-1422 LSHSPSGVKE RAKEIESRAI SQVGLPKPSQ MRRSASLAKL GYLDLCKDCL 1301 1350 ENSP00000269033/1-1423 PEREPASCES PHLKLLQPFL RTDSGMHAME DQESLENPGA PHNPEPTKSF ENSBTAP00000014625/1-1373 PEREPVSSES PHLKLLQPFL RTDSG---ME AQEPPENPDT PQNREPTKYL ENSTTRP00000015484/1-1391 PERGPICSES PHLKLL---- RMGSG---ME AQEPPENPDA PQNLEPTKWF bmy_00140T0/1-1347 PERGPVCSES PHLKLLQPFI RTGPG---ME AQEPPEDPDA PQNLEPTKYF BACU010483/1-1422 PERGPVCSES PHLKLLQPFI RTGSG---ME AQEPPENPDA PQNLEPTKYF 1351 1400 ENSP00000269033/1-1423 VEQLTTTECI VQSKPVERPL VQYAKEFGSS QQYLLPRAGL ELTSSEGGLP ENSBTAP00000014625/1-1373 IEQLRTTECI AQSRPVERPL AQYAKEFGSS QQCLLPRAGP GLTSSEGGLP ENSTTRP00000015484/1-1391 IEQLKTTECI AQSKPVERPL VQYAKEFGSS QQCLLPRAGP ELTSSEGGLP bmy_00140T0/1-1347 IEQLRTTECI AQSKPVERPL VQYAKEFGSS QQCLLPRAGP ELTSSEGGLP BACU010483/1-1422 IEQLKTTECI AQSKPVQRPL VQYAKEFGSS QQCLLPRAGP ELTSSEGGLP 1401 1450 ENSP00000269033/1-1423 VLQTQGLQCA CPAPGLAVAP RQQHGRTHPL RRLKKANDKK RTTNPFYNTM ENSBTAP00000014625/1-1373 SVPTQGLQDT SPAPGLAVAP REQHGRTHPL RRLRKANDKK RTTNPFYNTM ENSTTRP00000015484/1-1391 LVQTQGLQGA GPAPGLAVVP RQQHGRTHPL RRLKKANDKK RTTNPFYNTM bmy_00140T0/1-1347 LVQTQGLQGA GPAPGLAVVP RQQHGRTHPL RRLKKANDKK RTTNPFYNTM BACU010483/1-1422 LVQTQGLQGA GPAPGLAVVP RQQHGRTHPL RRLKKANDKK RTTNPFYNTM