KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:22 2014 Check: 00 .. Name: ENSTTRP00000004883/1-512 Len: 541 Check: 7039 Weight: 1.00 Name: bmy_02964T0/1-530 Len: 541 Check: 8527 Weight: 1.00 Name: BACU014143/1-535 Len: 541 Check: 1422 Weight: 1.00 Name: ENSP00000261017/1-475 Len: 541 Check: 3726 Weight: 1.00 Name: ENSBTAP00000014635/1-475 Len: 541 Check: 3384 Weight: 1.00 // 1 50 ENSTTRP00000004883/1-512 MAELQMLLEE XXXXXXXXXX XXXXXXXXXX XXXXXXXXXS ADKQRALEET bmy_02964T0/1-530 -----MLLEE EIPGGRRALF DSYTNLERVA DYCENNYIQS ADKQRALEET BACU014143/1-535 MAELQMLLEE EIPGGRRALF DSYTNLERVA DYCENNYIQS ADKQRALEET ENSP00000261017/1-475 MAELQMLLEE EIPGGRRALF DSYTNLERVA DYCENNYIQS ADKQRALEET ENSBTAP00000014635/1-475 MAELQMLLEE EIPGGRRALF DSYTNLERVA DYCENNYIQS ADKQRALEET 51 100 ENSTTRP00000004883/1-512 KAYTTQSLAS VAYLINTLAN NVLQXXXXXX XXXXXXXXXX XXXXXTVDIH bmy_02964T0/1-530 KAYTTQSLAS VAYLINTLAN NVLQMLDIQA SQLRRMESSI NHISQTVDIH BACU014143/1-535 KAYTTQSLAS VAYLINTLAN NVLQMLDIQA SQLRRMESSI NHISQTVDIH ENSP00000261017/1-475 KAYTTQSLAS VAYLINTLAN NVLQMLDIQA SQLRRMESSI NHISQTVDIH ENSBTAP00000014635/1-475 KAYTTQSLAS VAYLINTLAN NVLQMLDIQA SQLRRMESSI NHISQTVDIH 101 150 ENSTTRP00000004883/1-512 KEKVARREIG ILTTNKNTSR THKIIAPANL ERPVRYIRKP IDYTILDDIG bmy_02964T0/1-530 KEKVARREIG ILTTNKNTSR THKIIAPANL ERPVRYIRKP IDYTILDDIG BACU014143/1-535 KEKVARREIG ILTTNKNTSR THKIIAPANL ERPVRYIRKP IDYTILDDIG ENSP00000261017/1-475 KEKVARREIG ILTTNKNTSR THKIIAPANL ERPVRYIRKP IDYTILDDIG ENSBTAP00000014635/1-475 KEKVARREIG ILTTNKNTSR THKIIAPANL ERPVRYIRKP IDYTILDDIG 151 200 ENSTTRP00000004883/1-512 HGVKWLLRFK VSTQNMKMGG LPRTTPPTQK PPSPPMSGKG TLGRHSPYRT bmy_02964T0/1-530 HGV------K VSTQNMKMGG LPRTTPPTQK PPSPPMSGKG TLGRHSPYRT BACU014143/1-535 HGV------K VSTQNMKMGG LPRTTPPTQK PPSPPMSGKG TLGRHSPYRT ENSP00000261017/1-475 HGV------K VSTQNMKMGG LPRTTPPTQK PPSPPMSGKG TLGRHSPYRT ENSBTAP00000014635/1-475 HGV------K VSTQNMKMGG LPRTTPPTQK PPSPPMSGKG TLGRHSPYRT 201 250 ENSTTRP00000004883/1-512 LEPVRPPVVP NDYVPSPART MAPSQQSPVR TASVNQRNRT YSSSGSSGGS bmy_02964T0/1-530 LEPVRPPVVP NDYVPSPART MAPSQQSPVR TASVNQRNRT YSSSGSSGGS BACU014143/1-535 LEPVRPPVVP NDYVPSPART MAPSQQSPVR TASVNQRNRT YSSSGSSGGS ENSP00000261017/1-475 LEPVRPPVVP NDYVPSPTRN MAPSQQSPVR TASVNQRNRT YSSSGSSGGS ENSBTAP00000014635/1-475 LEPVRPPVVP NDYVPSPTRN MAPSQQSPVR TASVNQRNRT YSSSGSSGGS 251 300 ENSTTRP00000004883/1-512 HPSSRSSSRE NSGSGSVGVP IAVPTPSPPS VFPAPAGSAG TPPLPATSAS bmy_02964T0/1-530 HPSSRSSSRE NSGSGSVGVP IAVPTPSPPS VFPAPAGSAG TPPLPATSAS BACU014143/1-535 HPSSRSSSRE NSGSGSVGVP IAVPTPSPPS VFPAPAGSAG TPPLPATSAS ENSP00000261017/1-475 HPSSRSSSRE NSGSGSVGVP IAVPTPSPPS VFP------- ---------- ENSBTAP00000014635/1-475 HPSSRSSSRE NSGSGSVGVP IAVPTPSPPS VFP------- ---------- 301 350 ENSTTRP00000004883/1-512 APAPLPATVP PSTAPDTAAG GAQTLADGFT SPTPPVVSST PPTGHPVQFY bmy_02964T0/1-530 APAPLPATVP PSTAPDTAAG GAQTLADGFT SPAPPVVSST PPTGHPVQFY BACU014143/1-535 APAPLPATVP PSTAPDTAAG GAQTLADGFT SPAPPVVSST PPAGHPVQFY ENSP00000261017/1-475 ---------- ---------- ---------- ---------- ---GHPVQFY ENSBTAP00000014635/1-475 ---------- ---------- ---------- ---------- ---GHPVQFY 351 400 ENSTTRP00000004883/1-512 SMNRPATRHT PPTIGGSLPY RRPPSITSQT SLQNQMNGGP FYSQNPV--- bmy_02964T0/1-530 SMNRPATRHT PPTIGGSLPY RRPPSITSQT SLQNQMNGGP FYSQNPVSLA BACU014143/1-535 SMNRPATRHT PPTIGGSLPY RRPPSITSQT SLQNQMNGGP FYSQNPVSLA ENSP00000261017/1-475 SMNRPASRHT PPTIGGSLPY RRPPSITSQT SLQNQMNGGP FYSQNPVSLA ENSBTAP00000014635/1-475 SMNRPAARHT PPTIGGSLPY RRPPSITSQT SLQSQMNGGP FYSQNPVSLA 401 450 ENSTTRP00000004883/1-512 ---------- ---------- ------SDAP PPPPPVEEPV FDESPPPPPP bmy_02964T0/1-530 PPPPSILQVT PQLPLMGFVA RVQENISDAP PPPPPVEEPV FDESPPPPPP BACU014143/1-535 PPPPSILQVT PQLPLMGFVA RVQENISDAP PPPPPVEEPV FDESPPPPPP ENSP00000261017/1-475 PPPPSILQVT PQLPLMGFVA RVQENISDTP PPPPPVEEPV FDESPPPPPP ENSBTAP00000014635/1-475 PPPPSILQVT PQLPLMGFVA RVQENISDAP PPPPPVEEPV FDESPPPPPP 451 500 ENSTTRP00000004883/1-512 PEDYEEEEAA VVEYSDPYAE EDPPWAPRSY LEKVVAIYDY TKDKEDELSF bmy_02964T0/1-530 PEDYEEEEAA VVEYSDPYAE EDPPWAPRSY LEKVVAIYDY TKDKEDELSF BACU014143/1-535 PEDYEEEEAA VVEYSDPYAE EDPPWAPRSY LEKVVAIYDY TKDKEDELSF ENSP00000261017/1-475 PEDYEEEEAA VVEYSDPYAE EDPPWAPRSY LEKVVAIYDY TKDKEDELSF ENSBTAP00000014635/1-475 PEDYEEEEAA VVEYSDPYAE EDPPWAPRSY LEKVVAIYDY TKDKEDELSF 501 550 ENSTTRP00000004883/1-512 QEGAIIYVIK KNDDGWYEGV MNGVTGLFPG NYVESIMHYS E bmy_02964T0/1-530 QEGAIIYVIK KNDDGWYEGV MNGVTGLFPG NYVESIMHYS E BACU014143/1-535 QEGAIIYVIK KNDDGWYEGV MNGVTGLFPG NYVESIMHYS E ENSP00000261017/1-475 QEGAIIYVIK KNDDGWYEGV MNGVTGLFPG NYVESIMHYS E ENSBTAP00000014635/1-475 QEGAIIYVIK KNDDGWYEGV MNGVTGLFPG NYVESIMHYS E