KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:23 2014 Check: 00 .. Name: bmy_02963T0/1-837 Len: 1335 Check: 8215 Weight: 1.00 Name: ENSTTRP00000004907/1-1296 Len: 1335 Check: 253 Weight: 1.00 Name: ENSP00000316543/1-1250 Len: 1335 Check: 2267 Weight: 1.00 Name: BACU014145/1-644 Len: 1335 Check: 6404 Weight: 1.00 Name: ENSBTAP00000014638/1-1145 Len: 1335 Check: 8359 Weight: 1.00 // 1 50 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 -------MEQ LSDEEIDHGA EEDSDKEDQD LDKMFGAWLG ELDKLTQXXX ENSP00000316543/1-1250 -------MEQ LSDEEIDHGA EEDSDKEDQD LDKMFGAWLG ELDKLTQSLD BACU014145/1-644 MQVRSWPMEQ LSDEEIDHGA EEDSDKEDQD LDKMFGAWLG ELDKLTQSLD ENSBTAP00000014638/1-1145 -------MEQ LSDEEIDHGA EEDSDKEDQD LDKMFGAWLG ELDKLTQSLD 51 100 bmy_02963T0/1-837 ---------- --------MI HFSDLFLFLH DNEN------ ---------- ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXALNQGET VDLDALMADL ENSP00000316543/1-1250 SDKPMEPVKR SPLRQETNMA NFSYRFSIYN LNEALNQGET VDLDALMADL BACU014145/1-644 SDKPTEPIQR SPLRQETNMA NFSYRFSIYN LNEALNQGET VDLDALMADL ENSBTAP00000014638/1-1145 SDKPTEPIKR SPLRQETNMA NFSYRFSIYN LNEALNQGET VDLDALMADL 101 150 bmy_02963T0/1-837 CPF------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 CSIEQELSSF GAGNSKRQIT ETKATQKLPA SRHTSKHGTL KGLSSSSNRI ENSP00000316543/1-1250 CSIEQELSSI GSGNSKRQIT ETKATQKLPV SRHTLKHGTL KGLSSSSNRI BACU014145/1-644 CSIEQELSSI GAGNSKRQIT ETKATQKLPA SRHTSKHGTL KGLSSSSNRI ENSBTAP00000014638/1-1145 CSIEQELSSI GAGNTKRQIT ETKATQKLPT SRHTSKHGTL KGLSSSSNRI 151 200 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 TKPSHANYSL DDITAQLEQA SLSMDEAAQQ SVLEGTKSLV TNQHRRTASA ENSP00000316543/1-1250 AKPSHASYSL DDVTAQLEQA SLSMDEAAQQ SVLEDTKPLV TNQHRRTASA BACU014145/1-644 TKPSPANYSL DDITAQLEQA SLSMDEAAQQ SVLEDAKPSV TNQHRRTASA ENSBTAP00000014638/1-1145 TKPSHANYSL DDITAQLEQA SLSMDEAAQQ SVLEDTKPLV TNQHRRTASA 201 250 bmy_02963T0/1-837 ---------- ---------- ---------- ------PPPL PVIFFLPAFS ENSTTRP00000004907/1-1296 GTVSDAEVRS ISNSSRSSIT SAASSMDSLD IDKVTRPQEL DLTHQGQPIT ENSP00000316543/1-1250 GTVSDAEVHS ISNSSHSSIT SAASSMDSLD IDKVTRPQEL DLTHQGQPIT BACU014145/1-644 GTVSDAEARS VSNSSRSSIA SAASSMDSLD IDKVTRPQEL DLTHQGQPIT ENSBTAP00000014638/1-1145 GTVSDAEVRS ISNSSRSSIT SATSSMDSLD IDKVARPQEL DLTHQGQPIT 251 300 bmy_02963T0/1-837 QHAISLRCPS KQAKRHIDFT EEQAELTPHS YLDRETSLLL RNIAGKPSHL ENSTTRP00000004907/1-1296 EHAISLRCPS KQAKRHIDFT EEQAELTPHS YLDRETSLLL RNIAGKPSHL ENSP00000316543/1-1250 E--------- ---------- ---------- ---------- ---------- BACU014145/1-644 EHAISLRCPS KQAKRQIDFT EEQAELTP-- ---------- ---------- ENSBTAP00000014638/1-1145 E--------- ---------- ---------- ---------- ---------- 301 350 bmy_02963T0/1-837 LTKEEQAAKL KAEKIRVALE KIKEAQVKKL VIRVHMSDDS SKTMMVDERQ ENSTTRP00000004907/1-1296 LTKEEQAAKL KAEKIRVALE KIKEAQVKKL VIRVHMSDDS SKTMMVDERQ ENSP00000316543/1-1250 ---EEQAAKL KAEKIRVALE KIKEAQVKKL VIRVHMSDDS SKTMMVDERQ BACU014145/1-644 ---EEQAAKL KAEKIRVALE KIKEAQVKKL VIRVHMSDDS SKTMMVDERQ ENSBTAP00000014638/1-1145 ---EEQAAKL KAEKIRVALE KIKEAQVKKL VIRVHMSDDS SKTMMVDERQ 351 400 bmy_02963T0/1-837 TVRQVLDNLM DKSHCGYSLD WSLVETISEL QM-------- -------ERI ENSTTRP00000004907/1-1296 TVRQVLDNLM DKSHCGYSLD WSLVETISEL QM-------- -------ERI ENSP00000316543/1-1250 TVRQVLDNLM DKSHCGYSLD WSLVETVSEL QM-------- -------ERI BACU014145/1-644 TVRQVLDNLM DKSHCGYSLD WSLVETVSEL QMVLMNTNKM LIFYFGTERI ENSBTAP00000014638/1-1145 TVRQVLDNLM DKSHCGYSLD WSLVETISEL QM-------- -----GTERI 401 450 bmy_02963T0/1-837 FEDHENLVEN LLNWTRDSQN KLIFMERIEK YALFKNPQNY LLGKKETAEM ENSTTRP00000004907/1-1296 FEDHENLVEN LLNWTRDSQN KLIFMERIEK YALFKNPQNY LL-KKETAEM ENSP00000316543/1-1250 FEDHENLVEN LLNWTRDSQN KLIFMERIEK YALFKNPQNY LLGKKETAEM BACU014145/1-644 FEDHENLVEN LLNWTRDSQN KLIFMERIEK YALFKNPQ-- ---------- ENSBTAP00000014638/1-1145 FEDHENLVEN LLNWTRDSQN KLIFMERIEK YALFKNPQNY LLGKKETAEM 451 500 bmy_02963T0/1-837 ADRNKEVLLE ECFCGSSVTV PEIEGVLWLK DDGKKSWKKR YFLLRASGIY ENSTTRP00000004907/1-1296 ADRNKEVLLE ECFCGSSVTV PEIEGVLWLK DDGKKSWKKR YFLLRASGIY ENSP00000316543/1-1250 ADRNKEVLLE ECFCGSSVTV PEIEGVLWLK DDGKKSWKKR YFLLRASGIY BACU014145/1-644 ---------- ECFCGSSVTV PEIEGVLWLK DDGKKSWKKR YFLLRASGIY ENSBTAP00000014638/1-1145 ADRNKEVLLE ECFCGSSVTV PEIEGVLWLK DDGKKSWKKR YFLLRASGIY 501 550 bmy_02963T0/1-837 YVPKGKAKVS RDLVCFLQLD HVNVYYGQDY RNKYKAPTDY CLVLKHPQIQ ENSTTRP00000004907/1-1296 YVPKGKAKVS RDLVCFLQLD HVNVYYGQDY RNKYKAPTDY CLVLKHPQIQ ENSP00000316543/1-1250 YVPKGKAKVS RDLVCFLQLD HVNVYYGQDY RNKYKAPTDY CLVLKHPQIQ BACU014145/1-644 YVPKGKAKVS RDLVCFLQLD HVNVYYGQDY RNKYKAPTDY CLVLKHPQIQ ENSBTAP00000014638/1-1145 YVPKGKAKVS RDLVCFLQLD HVNVYYGQDY RNKYKAPTDY CLVLKHPQIQ 551 600 bmy_02963T0/1-837 KKSQYIKYLC CDDVRTLHQW VNGIRIAKYG KQLYMNYQEA LKRTESAYDW ENSTTRP00000004907/1-1296 KKSQYIKYLC CDDVRTLHQW VNGIRIAKYG KQLYMNYQEA LKRTESAYDW ENSP00000316543/1-1250 KKSQYIKYLC CDDVRTLHQW VNGIRIAKYG KQLYMNYQEA LKRTESAYDW BACU014145/1-644 KKSQYIKYLC CDDVRTLHQW VNGIRIAKYG KQLYMNYQEA LKRTESAYDW ENSBTAP00000014638/1-1145 KKSQYIKYLC CDDMRTLHQW VNGIRIAKYG KQLYMNYQEA LKRTESAYDW 601 650 bmy_02963T0/1-837 TSLSSSSIKS GSSSSSIPES QSNHSNQSDS GVSDTQPAGH VRSQSIVSSI ENSTTRP00000004907/1-1296 TSLSSSSIKS GSSSSSIPES QSNHSNQSDS GVSDTPPAGH VRSQSIVSSI ENSP00000316543/1-1250 TSLSSSSIKS GSSSSSIPES QSNHSNQSDS GVSDTQPAGH VRSQSIVSSV BACU014145/1-644 TSLSSSSIKS GSSSSSIPES QSNHSNQSDS GVSDTQPAGH VRSQSIVSSI ENSBTAP00000014638/1-1145 TSLSSSSIKS GSSSSSIPES QSNHSNQSDS GVSDTQPAGH VRSQSMVSSI 651 700 bmy_02963T0/1-837 FSEAWKRGTQ LEESSK---- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 FSEAWKRGTQ LEESSKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 FSEAWKRGTQ LEESSKARME SMNRPYTSLV PPLSPQPKIV TPYTASQPSP BACU014145/1-644 FSEAWKRGTQ LEESSK---- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 FSEAWKRGTQ LEESSKARME SVNRPYTSLI PPLSPQPKLV TPYTASQPSP 701 750 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 PLPPPPPPPP PPPPPPPPPP PPLPSQSAPS AGSAAPMFVK YSTITRLQNA BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 PLPPPPPPPP PPR------- ---------- ---------- ---------- 751 800 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 SQHSGALFKP PTPPVMQSQS VKPQILVPPN GVVPPPPPPP PPPTPGSAMA BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 QLKPAPCAPS LPQFSAPPPP LKIHQVQHIT QVAPPTPPPP PPIPAPLPPQ BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 ---------- ---------- ---------T QTAPPAPPPP PPVPAPLPPQ 851 900 bmy_02963T0/1-837 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 APPKPLVTIP APTSTKTVAP VVTQAAPPTP TPPVPPAKKQ PAFPASYIPP BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 APPKPLVTLP PAASTKTVPP AVTQSLPPTP TPPVPPVKKQ PVLPVSHVPP 901 950 bmy_02963T0/1-837 ---------- ------QQSF CVRPPPSPLS PAPSVVKQIA SQFPPPLAAP ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 SPPTPPVPVP PPTLPKQQSF CAKPPPSPLS PVPSVVKQIA SQFPPPPTPP BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 SPPVPPGPVP PPTLPKQQSF SVKPPPSPLS PAPSVVKQIA SQFPPPPAPP 951 1000 bmy_02963T0/1-837 PAEAAPLKPA SAAANVAPQS PPAVKAKPKW QPGSTPVPPP DFPPPPPESS ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 AMESQPLKPV P--ANVAPQS PPAVKAKPKW QPSSIPVPSP DFPPPPPESS BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 PAEGPPLKPA S--VSLTPQS PPAVKAKPKW QPSSVPVPSP DFPPPPPESS 1001 1050 bmy_02963T0/1-837 LVFPPPPP-- --------PP PPPPAAPTAA PAPDKSGSPG KKTSKTSSPG ENSTTRP00000004907/1-1296 XXXXXXXXX- --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316543/1-1250 LVFPPPPPS- ------PVPA PPPPPPPTAS PTPDKSGSPG KKTSKTSSPG BACU014145/1-644 ---------- ---------- ---------S QVPNEKASTA KVYYT----- ENSBTAP00000014638/1-1145 LVFPPPPPPP PAPAPQPPPP PPPPATPAAA PAPDKSSSPG RKTSKTCSPG 1051 1100 bmy_02963T0/1-837 VKKPPPTPQR NSSIKSGSCA EHPEPKRPSV DSLVSKFAAP -EPSASPGKE ENSTTRP00000004907/1-1296 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVSKFAAP -EPSASPGKE ENSP00000316543/1-1250 GKKPPPTPQR NSSIKSSSGA EHPEPKRPSV DSLVSKFTPP -AESGSPSKE BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 AKKPPPTPQR NSSIKSSSCA EHPEPKKPSV DSLISKFASP AEPSGSPSKE 1101 1150 bmy_02963T0/1-837 TPPPPAAPPK PGKL-----S LPGVLQQGGV SAKASVLSGR GKDSVVEFPS ENSTTRP00000004907/1-1296 TPPPPAAPPK PGKL-----S LPGVLQQGGV SAKASVLSGR GKDSVAEFPS ENSP00000316543/1-1250 TLPPPAAPPK PGKLNLSGVN LPGVLQQGCV SAKAPVLSGR GKDSVVEFPS BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 TPPPPAAPPK PGKLHLSGVN LPGVLQQGCL PVKAAALSGR GKDSAVEFPS 1151 1200 bmy_02963T0/1-837 PPSDSDFPPP PPEIELPLPP VDIPAVFSGS TSPKVAVVNP QPQSWAKTSV ENSTTRP00000004907/1-1296 PPSDSDFPPP PPEIELPLPP VDIPAVFSGS TSPKVAVVNP QPQPWAK-SV ENSP00000316543/1-1250 PPSDSDFPPP PPETELPLPP IEIPAVFSGN TSPKVAVVNP QPQQWSKMSV BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 PPSDSDFPPP PPETELPLPP IDIPAVFSGS TSPKVAVVNP QPQPWSKTSV 1201 1250 bmy_02963T0/1-837 RKAPPPTRPR RNDSTRLTQA ETSEQPPMAT VVPQVPTSPK SSLSVQPGFL ENSTTRP00000004907/1-1296 RKAPPPTRPK RNDSTRLTQA ETSEQLPMAT VVPQVPTSPK SSLSVQPGFL ENSP00000316543/1-1250 KKAPPPTRPK RNDSTRLTQA EISEQPTMAT VVPQVPTSPK SSLSVQPGFL BACU014145/1-644 ---------- ---------- ---------- -----PAAAK TGSS------ ENSBTAP00000014638/1-1145 KKAPPPTRPK RNDSTRLTQA EISEQPATAA VVPQVPTSPK SSLSVQPGFL 1251 1300 bmy_02963T0/1-837 ADLNRTLQRK SITRHGSLSS SRVSRAEPTA TMDDMALPPP PPELLSEQQK ENSTTRP00000004907/1-1296 ADLNRTLQRK SITRHGSLSS SRVSRAEPTA TMDDMALPPP PPELLSEHQK ENSP00000316543/1-1250 ADLNRTLQRK SITRHGSL-S SRMSRAEPTA TMDDMALPPP PPELLSDQQK BACU014145/1-644 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014638/1-1145 ADLNRTLQRK SITRHGSLSS SRVSRAEPTA TMDDMALPPP PPELLSEQQK 1301 1350 bmy_02963T0/1-837 ARYGGSHISG YATLRRGPPP APPKRDQNTK LSRDW ENSTTRP00000004907/1-1296 ARYGGSHISG YATLRRGPPP APPKRDQNTK LSRDW ENSP00000316543/1-1250 AGYGGSHISG YATLRRGPPP APPKRDQNTK LSRDW BACU014145/1-644 ---------- ---------- ---------- ----- ENSBTAP00000014638/1-1145 AAYGGSHISG YATLRRGPPP APPKRDQNTK LSRDW