KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:24 2014 Check: 00 .. Name: bmy_20410T0/1-278 Len: 349 Check: 9595 Weight: 1.00 Name: BACU007339/1-209 Len: 349 Check: 8292 Weight: 1.00 Name: ENSTTRP00000013585/1-306 Len: 349 Check: 7844 Weight: 1.00 Name: ENSP00000385763/1-329 Len: 349 Check: 7998 Weight: 1.00 Name: ENSBTAP00000014649/1-329 Len: 349 Check: 6209 Weight: 1.00 // 1 50 bmy_20410T0/1-278 VKRCSSGRLG AGGHGASTRV PAWGRGRRAL CG--TEEDLS LSLSLLHPTI BACU007339/1-209 ---------- ------MQHR THW-KGK--- -GFP------ ---------- ENSTTRP00000013585/1-306 ---------- ------MVHA KSW-TLKKHF VGHPTNSDFE LKTVELPPLK ENSP00000385763/1-329 ---------- ------MVRT KTW-TLKKHF VGYPTNSDFE LKTAELPPLK ENSBTAP00000014649/1-329 ---------- ------MVHA KSW-TLKKHF VGYPTNSDFE LKTVELPPLK 51 100 bmy_20410T0/1-278 PGT-----LP EPVPTSLRER PR-------- -----PRLNP TLSWNLPYSP BACU007339/1-209 --------VF ECAVSF---- ---------- ------RVVE SKNVAFPIGT ENSTTRP00000013585/1-306 NREVLLEALF FTVDPYM--- ---------- ------RVVE SKNSAFPTGT ENSP00000385763/1-329 NGEVLLEALF LTVDPYMRVA AKRLKEGDTM MGQQVAKVVE SKNVALPKGT ENSBTAP00000014649/1-329 DGEVLLEALY LTVDPYMRIM AKSLKEGDMM MGEQVARVVE SKNSAFPTGT 101 150 bmy_20410T0/1-278 TP----GGPM RS---PDSLR EVMQPADVEV LLEALFFTVD PYMSLTAYSG BACU007339/1-209 TVVAPSGGTA HSISDGKNLE KLLAEWPNTL PLSLALGTVG -MPSLKACSG ENSTTRP00000013585/1-306 TVVAP-GWTA HSISDGKNLE KLLAEWPDTL PLSLALGMVG -MPSLTAYSG ENSP00000385763/1-329 IVLASPGWTT HSISDGKDLE KLLTEWPDTI PLSLALGTVG -MPGLTAYFG ENSBTAP00000014649/1-329 IVLAPSGWTT HSISNGEKLE KVLAEWPDTL PLSLALGTVG -MPGLTAYFG 151 200 bmy_20410T0/1-278 LLDICGVQGG ETVLVNVAAG A--------- ---GCKVVGA AGSDKRVTCL BACU007339/1-209 RLDICGVQGG ETVLVNVAAG AVGSVVGQIA KLKGCKVVGA AGSDKRVTCL ENSTTRP00000013585/1-306 LLDISGVQGG ETVLVNVAAG AVGSVVGQIA KLKGCKVVGA AGSDKRVACL ENSP00000385763/1-329 LLEICGVKGG ETVMVNAAAG AVGSVVGQIA KLKGCKVVGA VGSDEKVAYL ENSBTAP00000014649/1-329 LLDICGVKGG ETVLVSAAAG AVGSIVGQIA KLKGCKVVGT AGSDEKVAWL 201 250 bmy_20410T0/1-278 EKYGFDVAFN YKTVKSLEET LQKASPEGYD CDFDNVGVEF SNVVIPQIKK BACU007339/1-209 EKYGFDVAFN YKTVKSLEET LQKASPEA-- ---------- VILIITVWEV ENSTTRP00000013585/1-306 EKYGFDVAFN YKTVKSLEET LQKASPEGYD CDFDNVGVEF SNVVIPQIKK ENSP00000385763/1-329 QKLGFDVVFN YKTVESLEET LKKASPDGYD CYFDNVGGEF SNTVIGQMKK ENSBTAP00000014649/1-329 KKHGFDVALN YKTVKSLEEA LKVAAPEGYD CYFDNVGGEF SNVAITQMKK 251 300 bmy_20410T0/1-278 FGR--IAIHG AISTYNRTGP IP----PEIL TY-------F TVRRAR---- BACU007339/1-209 FG-------- --------GP CFWQAHPEAI IFKELHFEGF PVYRWQGEVC ENSTTRP00000013585/1-306 FGRLAIAIRG PISTYNRTGL LPPGP-PEAV IFKELHFEGL PVYCWQ-EVR ENSP00000385763/1-329 FGR--IAICG AISTYNRTGP LPPGPPPEIV IYQELRMEAF VVYRWQGDAR ENSBTAP00000014649/1-329 FGR--IAICG AISVYNRTSP LPPGPSPEII IFKELHLQGF VVYRWQGEVR 301 350 bmy_20410T0/1-278 ---------- -RQGKIQYHE HITEGCENMP AAFTGMLKGE NLGKQ---- BACU007339/1-209 QR-L------ ---------- ---------- ---------- --------- ENSTTRP00000013585/1-306 EA-LKGLLTG VSEGKIQYHE HITEGFESMP AAFMGMLR-- ELGEAIVKA ENSP00000385763/1-329 QKALKDLLKW VLEGKIQYKE YIIEGFENMP AAFMGMLKGD NLGKTIVKA ENSBTAP00000014649/1-329 QKALRDLLKW VSEGKIQYHE HVTEGFENMP AAFIGLLKGE NLGKAIVKA