KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:24 2014 Check: 00 .. Name: ENSP00000253577/1-753 Len: 754 Check: 1764 Weight: 1.00 Name: BACU008499/1-550 Len: 754 Check: 4645 Weight: 1.00 Name: ENSBTAP00000014650/1-753 Len: 754 Check: 3362 Weight: 1.00 Name: bmy_14079T0/1-412 Len: 754 Check: 1835 Weight: 1.00 Name: ENSTTRP00000002560/1-754 Len: 754 Check: 8839 Weight: 1.00 // 1 50 ENSP00000253577/1-753 MALLAMHSWR WAAAAAAFEK RRHSAILIRP LVSVSGSGPQ WRPHQLGALG BACU008499/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014650/1-753 MALLAIHSWR WAAAAVAFEK RRHAVILIRP LVSFRGPGPQ WRSHQLRSSG bmy_14079T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002560/1-754 MALLAIPSWG WAAAAAAFEK RRHAVIQIRP LVSVWGPGPQ WRSRQLGGSG 51 100 ENSP00000253577/1-753 TARAYQQIPE SLKSITWQRL GKG-NSGQFL DAAKALQVWP LIEKRTCWHG BACU008499/1-550 ------QISE SLRHTTWQRL GKG-NSRQLL DATR------ ---------- ENSBTAP00000014650/1-753 TAGISQRISE LLRHTTWRRL GKD-NSRELL DATRALQAWP LIEKRTCWHG bmy_14079T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002560/1-754 TAGLSQQISE SLRHTTWQRL GKVXXXXXXX XXXXVLQVWP LIEKRTCWHG 101 150 ENSP00000253577/1-753 HAGGGLHTDP KEGLKDVDTR KIIKAMLSYV WPKDRPDLRA RVAISLGFLG BACU008499/1-550 ---------- ---LKDVDTQ KIIKAMLSYV WPRDRPDLRA RVAISLGFLG ENSBTAP00000014650/1-753 HAGGGLHTDP KEGLKDVDTR KIIKAMLSYV WPKDRPDLRA RVAISLGFLG bmy_14079T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002560/1-754 HAGGGLHTDP KEGLKDVDTQ KIIKAMLSYV WPRDRPDLRA RVAISLGFLG 151 200 ENSP00000253577/1-753 GAKAMNIVVP FMFKYAVDSL NQMSGNMLNL SDAPNTVATM ATAVLIGYGV BACU008499/1-550 GAKAMNIVVP FMFKYAVDSL NQMSGNMLNL SDAPNTVATM ATAVLIGYGI ENSBTAP00000014650/1-753 GAKAMNIVVP FMFKYAVDSL NQMSGNMLNL SDAPNTVATM ATAVLIGYGV bmy_14079T0/1-412 ----MNIVVP FMFKYAVDSL NQMSGNMLNL SDAPNTVVTM ATAVLIGF-- ENSTTRP00000002560/1-754 GAKAMNIVVP FMFKYAVDSL NQMSGNMLNL SDAPNTVATM ATAVLIGYGV 201 250 ENSP00000253577/1-753 SRAGAAFFNE VRNAVFGKVA QNSIRRIAKN VFLHLHNLDL GFHLSRQTGA BACU008499/1-550 SRAGAAFFNE VRNAVFGKVA QNSIRRIAKN VFLHLHNLDL AFHLNRQTGA ENSBTAP00000014650/1-753 SRAGAAFFNE VRNAVFGKVA QNSIRRIAKN VFLHLHNLDL AFHLSRQTGA bmy_14079T0/1-412 ---------- -RNAVFGKVA QNSIRRIAKN VFLHLHNLDL AFHLNRQTGA ENSTTRP00000002560/1-754 SRAGAAFFNE VRNAVFGKVA QNSIRRIAKN VFLHLHNLDL AFHLNRQTGA 251 300 ENSP00000253577/1-753 LSKAIDRGTR GISFVLSALV FNLLPIMFEV MLVSGVLYYK CGAQFALVTL BACU008499/1-550 LSKAIDRGTR GISFVLSALV FNLLPIMFEV TLVSGVLYYK CGAQFALVTL ENSBTAP00000014650/1-753 LSKAIDRGTR GISFVLSALV FNLLPIMFEV TLVSGVLYYR CGAQFALVTL bmy_14079T0/1-412 LSKAIDRGTR GISFVLSALV FNLLPIMFEV TLVSGVLYYR CGAQFALVTL ENSTTRP00000002560/1-754 LSKAIDRGTR GISFVLSALV FNLLPIMFEV TLVSGVLYYR CGAQFALVTL 301 350 ENSP00000253577/1-753 GTLGTYTAFT VAVTRWRTRF RIEMNKADND AGNAAIDSLL NYETVKYFNN BACU008499/1-550 GTLGAYTAFT VAVTRWRTRF RIEMNKADND AGNAAIDSLL NYETVKYFNN ENSBTAP00000014650/1-753 GTLGAYTAFT VAITQWRTKF RIEMNKADND AGNAAIDSLL NYETVKYFNN bmy_14079T0/1-412 GTLGAYTAFT VAVTRWRTRF RIEMNKADND AGNAAIDSLL NYETVKYFNN ENSTTRP00000002560/1-754 GTLGAYTAFT VAVTRWRTRF RIEMNKADND AGNAAIDSLL NYETVKYFNN 351 400 ENSP00000253577/1-753 ERYEAQRYDG FLKTYETASL KSTSTLAMLN FGQSAIFSVG LTAIMVLASQ BACU008499/1-550 ENYEAQRYDG FLKTYETASL KSTSTLAILN FGQSAIFSVG LTAIMVLASQ ENSBTAP00000014650/1-753 ENYEAQRYDG FLKTYEAASL KSTSTLAMLN FGQSAIFSVG LTAIMVLASQ bmy_14079T0/1-412 ENYEAQRYDG FLKTYETASL KSTSTLAMLN FGQSAIFSVG LTAIMVLASQ ENSTTRP00000002560/1-754 ENYEAQRYDG FLKTYETASL KSTSTLAMLN FGQSAIFSVG LTAIMVLASQ 401 450 ENSP00000253577/1-753 GIVAGTLTVG DLVMVNGLLF QLSLPLNFLG TVYRETRQAL IDMNTLFTLL BACU008499/1-550 GIVTGTLTVG DLVMVNGLLF QLSLPLNFLG TVYRETRQAF IDMNTLFTLL ENSBTAP00000014650/1-753 GIVAGTLTVG DLVMVNGLLF QLSLPLNFLG TVYRETRQAL IDMNTLFTLL bmy_14079T0/1-412 GIVTGTLTVG DLVMVNGLLF QLSLPLNFLG TVYRETRQAL IDMNTLFTLL ENSTTRP00000002560/1-754 GIVAGTLTVG DLVMVNGLLF QLSLPLNFLG TVYRETRQAL IDMNTLFTLL 451 500 ENSP00000253577/1-753 KVDTQIKDKV MASPLQITPQ TATVAFDNVH FEYIEGQKVL SGISFEVPAG BACU008499/1-550 KVDTRIKD-- ---------- ---------- ---------- ---------- ENSBTAP00000014650/1-753 KVDTRIKDKA MASPLQITPQ TATVAFDNVH FEYIEGQKVL NGISFEVPAG bmy_14079T0/1-412 KVDTRIKDKA MASPLQITPQ TATVAFDNVH FEYIEGQKVL SGISFEVPAG ENSTTRP00000002560/1-754 KVDTRIKDKA MASPLQITPQ TATVAFDNVH FEYIEGQKVL SGISFEVPAG 501 550 ENSP00000253577/1-753 KKVAIVGGSG SGKSTIVRLL FRFYEPQKGS IYLAGQNIQD VSLESLRRAV BACU008499/1-550 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014650/1-753 KKVAIVGGSG SGKSTIVRLL FRFYEPQKGN IYLAGQNIQD VSLESLRRAV bmy_14079T0/1-412 KKVAIVGGSG SGKSTIVRLL FRFYEPQKGN IYLAGQNIQD VSLESLRRAV ENSTTRP00000002560/1-754 KKVAIVGGSG SGKSTIVRLL FRFYEPQKGN IYLAGQNIQD VSLESLRRAV 551 600 ENSP00000253577/1-753 GVVPQDAVLF HNTIYYNLLY GNISASPEEV YAVAKLAGLH DAILRMPHGY BACU008499/1-550 ------AVLF HNTIYYNLLY GNINASPEEV YAVAKLAGLH DAILRMPHGY ENSBTAP00000014650/1-753 GVVPQDAVLF HNTIYYNLLY GNISASPEEV YAVAKLAGLH DAILRMPHGY bmy_14079T0/1-412 GVVPQ---VF KKR--KKLIW GKI------- ---------- ---------- ENSTTRP00000002560/1-754 GVVPQDAVLF HNTIYYNLLY GNINASPEEV YAVAKLAGLH DAILRMPHGY 601 650 ENSP00000253577/1-753 DTQVGERGLK LSGGEKQRVA IARAILKDPP VILYDEATSS LDSITEETIL BACU008499/1-550 DTQVGERGLK LSD------- ---------- -LLFPLLLFL LSNL--QTIL ENSBTAP00000014650/1-753 DTQVGERGLK LSGGEKQRVA IARAILKNPP VILYDEATSS LDSITEETIL bmy_14079T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002560/1-754 DTQVGERGLK LSGGEKQRVA IARAILKDPP VILYDEATSS LDSITEETIL 651 700 ENSP00000253577/1-753 GAMKDVVKHR TSIFIAHRLS TVVDADEIIV LDQGKVAERG THHGLLANPH BACU008499/1-550 GAMRDADKHR TSIFIAHRLS TVVDADEIIV LDQGKVAERG THYGLLANPG ENSBTAP00000014650/1-753 GAMRDAVKHR TSIFIAHRLS TVVDADEIIV LNQGKVAERG THHDLLANPS bmy_14079T0/1-412 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002560/1-754 GAMRDAVKHR TSVFIAHRLS TVVDADEIIV LDQGKVAERG THHGLLANPG 701 750 ENSP00000253577/1-753 SIYSEMWHTQ SSRVQNHDNP KWEAKKENIS KEEERKKLQE EIVNSVKGCG BACU008499/1-550 SIYSEMWHTQ SSHVQNHDNP RWDAKKENVS KEEERMKLQE EIVNSVKGCG ENSBTAP00000014650/1-753 SIYSEMWHTQ SSRVQNHDNP KWDAKKENVS KEEERKRLQE EIVNSVKGCG bmy_14079T0/1-412 -----YW--- ---------- ---------- ---------- -----VGGSS ENSTTRP00000002560/1-754 SIYSEMWHTQ SSHVQNHGNP KWDAKKENVS KEEERMKLQE EIVNSVKGCG 751 800 ENSP00000253577/1-753 NCSC BACU008499/1-550 NCSC ENSBTAP00000014650/1-753 NCSC bmy_14079T0/1-412 TRII ENSTTRP00000002560/1-754 NCSC