KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:29 2014 Check: 00 .. Name: ENSTTRP00000012728/1-824 Len: 916 Check: 6104 Weight: 1.00 Name: ENSP00000320936/1-866 Len: 916 Check: 3548 Weight: 1.00 Name: ENSBTAP00000014695/1-828 Len: 916 Check: 1565 Weight: 1.00 Name: bmy_08988T0/1-767 Len: 916 Check: 72 Weight: 1.00 Name: BACU007545/1-524 Len: 916 Check: 5725 Weight: 1.00 // 1 50 ENSTTRP00000012728/1-824 MGAPRRRPRA SRGPPPVPSL LLLLLLLCGP GLGRASLRLX X----XXXXX ENSP00000320936/1-866 ----MGAARS PPSAVPGPLL GLLLLLLGVL APGGASLRLL D----HRALV ENSBTAP00000014695/1-828 ----RRRPRV FPGSPPGPSL LLFLLLLRPP GLGLASPRLL D----HPAPE bmy_08988T0/1-767 ----MPTTEP SSTSPATDST DLALICLCRT WVTKNSMRKK NAGKMKKKKY BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012728/1-824 XXXXGLNCTV KNSTCLDDTW IHPRSLTPSP PKDVQTQLRF VHTQQGHLLP ENSP00000320936/1-866 CSQPGLNCTV KNSTCLDDSW IHPRNLTPSS PKDLQIQLHF AHTQQGDLFP ENSBTAP00000014695/1-828 CSQEGLNCTV KNSTCLDDSW IHPRNLTPSS PKNVQTQLRF AHTQQGHLLP bmy_08988T0/1-767 HSPTGLNCTV KNSTCLDDTW IHPRNLTPSS PKDVQTQLCF AHTQQGHLLP BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012728/1-824 VAHVEWTLQT DASILYLEGA ELSVLQLNTN ERLCVKFEFL STLKHHHKRW ENSP00000320936/1-866 VAHIEWTLQT DASILYLEGA ELSVLQLNTN ERLCVRFEFL SKLRHHHRRW ENSBTAP00000014695/1-828 VVHIEWTLQT DASVLYLEGA ELSILQLNTN ERLCVRFEFL TTLRHHHKRW bmy_08988T0/1-767 VVHIEWTLQT D--------- ---------- ---------- ---------- BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012728/1-824 RL-LSHFVWN --QEYEVTVH HKPI---DGD PNHQSRNFLV PDCEDPRMKM ENSP00000320936/1-866 RFTFSHFVVD PDQEYEVTVH HLPKPIPDGD PNHQSKNFLV PDCEHARMKV ENSBTAP00000014695/1-828 RFAFSHFVVE PREEYEVTVH HLPKPIPDGD PNHQSRNFLV PDCKDPRMKD bmy_08988T0/1-767 ---------- ---------- ---------- ---------- -DCEDPRMKI BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000012728/1-824 TTPCVSSGSL WDPNITVEIL EAHQLQLSFT PWNESTKYQI LLDSFLPAEN ENSP00000320936/1-866 TTPCMSSGSL WDPNITVETL EAHQLRVSFT LWNESTHYQI LLTSFPHMEN ENSBTAP00000014695/1-828 TTPCVSSGSL WDPNITVETL EAHQLQLSFT PWNESTSYQV LLHSFPPAEN bmy_08988T0/1-767 TTPCVSSGSL WDPSITVETL EDHQLRLSFT PWNESTKYQI LLDSFLPVEN BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000012728/1-824 RSCFRRVVDL DVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320936/1-866 HSCFEHMHHI PAPRPEEFHQ RSNVTLTLRN LKGCCRHQVQ IQPFFSSCLN ENSBTAP00000014695/1-828 QSCFQYVIDL PVPAQEATQQ RCHIMVTLPD SSWCCRHHVQ IQPFFSSCLN bmy_08988T0/1-767 RSCFRRVMDL TVPAQEATRQ CCNVTLTLPD FSWCCRHHVQ IQPFFSSCLN BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000012728/1-824 XXXXXXXXXX XXXXXXXXX- -AIEDHMPLW VSRCIPGLSI LFVGSVILLT ENSP00000320936/1-866 DCLRHSATVS CPEMPDTPE- -PIPDYMPLW VYWFITGISI LLVGSVILLI ENSBTAP00000014695/1-828 DCLRHSLSVA CPEVLHTPDH PPATDHTPLW VSAFITGLSI LLVGSVILLI bmy_08988T0/1-767 DCLRHSVAVP CPEVPHTPD- -AVEDYMPLW VSRCIPGLSI LLVGSVILLV BACU007545/1-524 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000012728/1-824 VCLAWRLPGS RHGKCENGSR CTDVLPAATS LSPPPLKPRK VWIVYSADHP ENSP00000320936/1-866 VCMTWRLAGP GSEKYSDDTK YTDGLPAA-D LIPPPLKPRK VWIIYSADHP ENSBTAP00000014695/1-828 LCMTWRLPGF RQGKHEDGTK DTEILPAATS LSPPPLKPRK VWIVYSADHP bmy_08988T0/1-767 VCMAWRLLGS HHGKYENGTR CTDVLPAATS LSPPPLKPRK VWIVYSADHP BACU007545/1-524 --MAWRLPGS HHGKYENGTR CTDVLPAATS LSPPPLKPRK VWIVYSADHP 401 450 ENSTTRP00000012728/1-824 LYVDVVLKFA QFLLTVCGTE VALDLLEEHA ISEAGVMTCV GRRKHDVMEG ENSP00000320936/1-866 LYVDVVLKFA QFLLTACGTE VALDLLEEQA ISEAGVMTWV GRQKQEMVES ENSBTAP00000014695/1-828 LYVDVVLKFA QFLLTVCGTE VALDLLEEQA ISEVGVMTWV GRQKQEVADS bmy_08988T0/1-767 LYVDVVLKFA QFLLTVCGTE VALDLLEEQA ISEAGVMTWV GRRKQEVVEG BACU007545/1-524 LYVDVVLKFA QFLLTVCGTE VALDLLEEQA ISEAGVMTWV GRRKQEVVEG 451 500 ENSTTRP00000012728/1-824 NSKIIVLCSR GTRXXXXXXX XXX--XXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320936/1-866 NSKIIVLCSR GTRAKWQALL GRG--APVRL RCDHGKPVGD LFTAAMNMIL ENSBTAP00000014695/1-828 NSKIVVLCSR GTRAKWQAML GWEDAAAVQL RCDRGQPAGD LFTAAMNMIL bmy_08988T0/1-767 NSKIIVLCSR GTRAKWQAIL GWED-ATVQL RCDRGKPAGD LFTAAMNMIL BACU007545/1-524 NSKVIVLCSR GTRAKWQAIL GGQD-AIVQL RCDRGKPAGD LFTAAMNMIL 501 550 ENSTTRP00000012728/1-824 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000320936/1-866 PDFKRPACFG TYVVCYFSEV SCDGDVPDLF GAAPRYPLMD RFEEVYFRIQ ENSBTAP00000014695/1-828 PDFKKPACFG TYIVCYFSDI SCEADVPDLF NITSCYELMD RFEEVYFRIQ bmy_08988T0/1-767 PDFKRPACFG TYIVCYFSDI SCEADIPELF NITSCYALMD KFEEVYFRIQ BACU007545/1-524 PDFKRPACFG TYIVCYFSDI SCEADIPELF NITSCYALMD KFEEVYFRIQ 551 600 ENSTTRP00000012728/1-824 XXXXXXXXXM HRVGALTAQN YLQSPSGQQL REAVQRFRRW QAQRPDWFKL ENSP00000320936/1-866 DLEMFQPGRM HRVGELSGDN YLRSPGGRQL RAALDRFRDW QVRCPDWFEC ENSBTAP00000014695/1-828 DLEMFEPGRM HRVGALAAQN YLQSPSGRQL REAVQRFRRW QAQRPDWFEL bmy_08988T0/1-767 DLEMFGPGRM HRVGVLTAQN YLQSPGGQQL REAVQRFRRW QAQCPDWFKL BACU007545/1-524 DLEMFGPGRM HRVRVLTAQN YLQSPGGQQL REAVQRFRRW QAQCPDWFQL 601 650 ENSTTRP00000012728/1-824 ENLCPADDQD LPSLDEEAFE EP--P-PGGG IVRQEPLVLE PASQGSLLVE ENSP00000320936/1-866 ENLYSADDQD APSLDEEVFE EPLLP-PGTG IVKRAPLVRE PGSQACLAID ENSBTAP00000014695/1-828 ENLRSADGRD LPSLDEEAFE EE--PLPEGG IVRQEPLVRE PTSRDHLLVE bmy_08988T0/1-767 ENLCSADDQD LPSLDEEAFE EP--P-PGGG IVRQEPLVLE PASQGSLLVE BACU007545/1-524 ENLCSADDQD LPSLDEEAFE EP--P-PGGG IVRQEPLVLE PASQGSLLVE 651 700 ENSTTRP00000012728/1-824 LLLAGEGG-- -PVLEPQPWP QEQPAAQTLQ TTVVPVDGAP PAQAVEPILR ENSP00000320936/1-866 PLVGEEGGAA VAKLEPHLQP RGQPAPQPLH TLVLAAEEGA LVAAVEPGPL ENSBTAP00000014695/1-828 LLLAGEGGGG LARLEPQPRP PGQPAAPTLQ TMVVPVDRVP RAQVVEPVPQ bmy_08988T0/1-767 LLLAGEGGGP -SRLEPQPWP QEQPAAQTLQ TTVVPVDGAP PAQAVEPVPQ BACU007545/1-524 LLLAGDRGGP -SRLEPQPRP QEQPAAQTLQ TTVVPVDGAP LAQAVGPVPQ 701 750 ENSTTRP00000012728/1-824 AVWSGAASRL ALAGGDEA-- ---------- ---------- -CPLLGGWGP ENSP00000320936/1-866 A--DGAAVRL ALAGEGEA-- ---------- ---------- -CPLLGSPGA ENSBTAP00000014695/1-828 EVGSGAG-RL ALVEGEEA-- ---------- ---------- -CPLLGSQGP bmy_08988T0/1-767 AVRSGAASRL ALAGGGEA-- ---------- ---------- -CPLLGGWGP BACU007545/1-524 AVRSGAARXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 751 800 ENSTTRP00000012728/1-824 GRNSILFLPM HPEDPPVRSS -PTGRPD--- --------GS MLPSLQQSPR ENSP00000320936/1-866 GRNSVLFLPV DPEDSPLGSS TPMASPDLLP EDVREHLEGL MLSLFEQSLS ENSBTAP00000014695/1-828 RRNSVLFL-- ---------- -SEGR----- ---------- -LPTPKLNPS bmy_08988T0/1-767 GRNSLLFLPV HPEDPPVRSS -PAGRLD--- --------GS VLPPLQQSPS BACU007545/1-524 XXXXXXXXXX XXXXPPVRSS -PAGRPD--- --------GS VLPPPQQSLS 801 850 ENSTTRP00000012728/1-824 CQ-------- -----DVRTP PGGEQRRSVQ SDQGYISRSS PQL------- ENSP00000320936/1-866 CQAQGGCSRP AMVLTDPHTP YEEEQRQSVQ SDQGYISRSS PQPPEGLTEM ENSBTAP00000014695/1-828 LQ-------- -----DMLTP PEEEQRRSVQ SDQGYISRSS PQPPD----- bmy_08988T0/1-767 CQ-------- -----DVRAP PGEEERRSVQ SDQGYISRSS PQLP------ BACU007545/1-524 CQ-------- -----DVRAP PGEEQRRSTQ SDQGYISRSS PQLP------ 851 900 ENSTTRP00000012728/1-824 -GDADGDGGG ---GPGGQPL CPEGLESLRS LQLLLFLQEL HKNPGLEPKG ENSP00000320936/1-866 EEEEEEEQDP ---GKPALPL SPEDLESLRS LQRQLLFRQL QKNSGWDTMG ENSBTAP00000014695/1-828 -DDDDDDREG VGEEDGGQPL SPQGLESLRS LQLLLFFQDL SKNPGLGPEG bmy_08988T0/1-767 -DDDDGDRGG ---GPGGQPL YPEGLESLRS LQLQLFLQEL RKNPGLEPKG BACU007545/1-524 -DDDDGAQGG ---GPGAQPL YPEGLESLRR LQLQLFLQEL RKNPGLEPKG 901 950 ENSTTRP00000012728/1-824 AAW------- ------ ENSP00000320936/1-866 SESEGPSA-- ------ ENSBTAP00000014695/1-828 QPCAALPQPG ------ bmy_08988T0/1-767 PPRGASPAQG GEHVCL BACU007545/1-524 LPRGASPAQG GEHVCP