KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:53:36 2014 Check: 00 .. Name: ENSBTAP00000014745/1-1202 Len: 1208 Check: 5763 Weight: 1.00 Name: ENSTTRP00000004287/1-1189 Len: 1208 Check: 8557 Weight: 1.00 Name: bmy_12800T0/1-926 Len: 1208 Check: 5261 Weight: 1.00 Name: BACU013866/1-1006 Len: 1208 Check: 7355 Weight: 1.00 // 1 50 ENSBTAP00000014745/1-1202 MEDMDQSPLV SSSSDSPPRP QPAFKYQFVK EPEDEEEEEE EEEDEDEDED ENSTTRP00000004287/1-1189 MEDMDQSPMV SSSSDSPPRP QPAFKYQFVK EPED--EEEE EEEDEDEDED bmy_12800T0/1-926 ---------- ---------- ---------- ---------- ---------- BACU013866/1-1006 MEDIDQSPLV -SSSDSPPRP QPAFKYQFVK EPED--EEEE EEEDEDEDED 51 100 ENSBTAP00000014745/1-1202 LEELEVLERK PAAALSAAPV AAAATAATPA SAPLVDFGND FVPPAPRGPL ENSTTRP00000004287/1-1189 LEELEVLERK PAAALSAAPV PAA--AATPA GAPLLDFGND FVPPAPRGPL bmy_12800T0/1-926 ---------- ---------- ---------- ---------- ---------- BACU013866/1-1006 LEELE----- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000014745/1-1202 PAAPLAAPER QPSWDPSPVS SSVPAPSPPS ITADSPSKLF EDEEPPARPP ENSTTRP00000004287/1-1189 PAAPLAAPER QPSWDPSPAS SAEPAPSLPS ITKTSPSQLS EDDEPPARPP bmy_12800T0/1-926 ---------- ---------- ---------- ---------- ---------- BACU013866/1-1006 ---------- ------SPFS SINPRRSLAQ ---------- ---------- 151 200 ENSBTAP00000014745/1-1202 PPPPADVSPE AEPSWTSVVP APAAPPSTPA APKRRGSSGS VDETLFALPA ENSTTRP00000004287/1-1189 PPPPADVSPQ AEPAWIPAAP APAAPPSTPA APKRRGSSGS VDETLFALPA bmy_12800T0/1-926 ---------- ---------- ---------- ---------- ---------- BACU013866/1-1006 ---------- ---------- ---------- ---------- ------DLP- 201 250 ENSBTAP00000014745/1-1202 ASEPVIHSSA EKVMDLKEQP GNTVSAGQED FPSVLLETAA SLPSLSPLSA ENSTTRP00000004287/1-1189 ASE-VIHSSA EKIMDLKEQP GNTVSAGQED FPSVLLETAA SLPSLAPLSA bmy_12800T0/1-926 ---------- ---MDWKEQP GNTVSAGQED FPSVLLETAA SLPSLAPLSA BACU013866/1-1006 --------TA EKAMDWKEQP ANTVSAGQED FPSVLLETAA SLPSLAPLSA 251 300 ENSBTAP00000014745/1-1202 AAFKEREYLG DLPAVLPTEG TLPATSNEAS KAFSEKAKNP FVERNLTEFS ENSTTRP00000004287/1-1189 ASFKEHEYLG NLPAVLPTEG TLREISDEAS KEFSEKAKKP FVDRDLPEFS bmy_12800T0/1-926 ASFKEHEYLG NLPAVLPTEG TLREISDEAS KEFSEKAKKP FVGRDLPEFS BACU013866/1-1006 AAFKEHEYLG NLPAVLPTEG TLREISDEAS KEFSEKAKKP FVDRDLPEFS 301 350 ENSBTAP00000014745/1-1202 ELEYSEMESS FSGSQKAEPA VTVANPRDEI VVRSKDKEED LVSLNILHTQ ENSTTRP00000004287/1-1189 ELEYSEMGSS FSGSPRAESA ITVANPREEI IVKNKDEEED LVSNNILRT- bmy_12800T0/1-926 ELEYSEMGSS FSGSPRAESA ITVANPREEI IVKNKDEEED LVSNNILRTQ BACU013866/1-1006 ELEYSEMGSS FSGSPRAESA ITVANPREEI IVKNKDEEED LVSNNILRTQ 351 400 ENSBTAP00000014745/1-1202 QELSTVLTKS VEEEDRVLSP EKTKDSFKEK GVAAEASMRE EYADFKPFER ENSTTRP00000004287/1-1189 QELPIVLSKS VXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12800T0/1-926 QELPIVLTKS VKEEDRVMSP EKTKDSFNEK GIVAEAPLRE EYADFKPFER BACU013866/1-1006 QELPIVLTKS VKEEDRVMSP EKTKDSFNEK GIVAEAPLRE EYADFKPFER 401 450 ENSBTAP00000014745/1-1202 VWEVKDTYKQ DSDVLVAGGN IESKLEGKVD KKHFSDSLEQ TNREKDSESS ENSTTRP00000004287/1-1189 XXXXXXXXXX XXXXXXX--X XXXXXXXKVD TERFSDSLEQ TNREKDSESS bmy_12800T0/1-926 VWEVKDTYKQ DSDVLAAGGN IESKLEGKVD KKRFSDSLEQ TNHEKDSESS BACU013866/1-1006 VWEVKDTYKQ DSDVLAAGGN IESKLEGKVD KKRFSDSLEQ TNHEKDSESS 451 500 ENSBTAP00000014745/1-1202 NDDTSFPSTP EAVRGGSGAY ITCAPFNPTT ENVSTNIFPL LEDHTSENKT ENSTTRP00000004287/1-1189 NDDTSFPSTP EAIKDGSGAY ITCAPFNP-- ---SANIFPL LEDHTSENKT bmy_12800T0/1-926 NDDTSFPSTP EAIKEGSGAY ITCAPFNP-- ---SANILPL LEDHTSENKT BACU013866/1-1006 NDDTSFPSTP EAIKDGSGAY ITCAPFNP-- ---SANIFPL LEDHTSENKT 501 550 ENSBTAP00000014745/1-1202 DEKKIEEKKA QIVTEKNASV KTSNPFLMAA QESKTDYVTT DHVSKVTEEV ENSTTRP00000004287/1-1189 DEKKIEEKKA QIVTEKNASA KTSNPFLVAT QDSKTDYDTT DHLSEVTEEV bmy_12800T0/1-926 DEKKIEEKKA QIVTEKNASA KTSNLFLVAT QDSKTDYDTT DHLSEVTEEV BACU013866/1-1006 DEKKIEEKKA QIVTEKNASA KTSNLFLVAT QDSKTDYDTT DHLSEVTEEV 551 600 ENSBTAP00000014745/1-1202 VANMPEGLTP DLVQEACESE LNEATGTKIA FETKMDLVQT SEAVQESLYP ENSTTRP00000004287/1-1189 VANMHEGLTP DLVQEACESE LSEATGTKIA FETKMDLVQT SEAMQESLYP bmy_12800T0/1-926 VANMPEGLTP DLVQEACESE LSEATGTKIA FETKMDLVQT SEAMQESLYP BACU013866/1-1006 VANMPEGLTP DLVQEACESE LSEATGTKIA FETKMDLVQT SEAMQESLYP 601 650 ENSBTAP00000014745/1-1202 VTQLCPSFEE SEATPSPVLP DIVMEAPLNS VVPSAGASAV QLSSSPLETP ENSTTRP00000004287/1-1189 VAQLCPSFEE SEATPSPVLP DIVMEAPLNS IVPSAGASAV QLSSSPLEAP bmy_12800T0/1-926 VAQLCPSFEE SEATPSPVLP DIVMEAPLNS IVPSAGASAV QVSSSPLEAP BACU013866/1-1006 VAQLCPSFEE SEATPSPVLP DIVMEAPLNS IVPSAGASAV QVSSSPLEAP 651 700 ENSBTAP00000014745/1-1202 PSVNYESIKF EPENPPPYEE AMNVSLKKES GMNEEITEPE GISVAVQETE ENSTTRP00000004287/1-1189 PSVNYESIKL EPENPPPYEE AMNVSLKKVS GMNEEIKEAE SISVAVQETE bmy_12800T0/1-926 PXVNYESIKL EPENPPPYEE AMNVSLKKVS GMNEEIKEPE SISVAVQETE BACU013866/1-1006 PSVNYESIKL EPENPPPYEE AMNVSLKKVS GMNEEIKEPE SISVAVQETE 701 750 ENSBTAP00000014745/1-1202 APYISIACDL IKETKISTEP TPDFSSYSEI AEVAQPVPEH SELVEDSSPD ENSTTRP00000004287/1-1189 APYISIACDL IKETKLSTEP TPDFSSYSEI AKVAQLVPTH SELVEDSSPD bmy_12800T0/1-926 APYISIACDL IKETKLSTEP TPDFSSYSEI AKVAQLVPTH SELVEDSSPD BACU013866/1-1006 APYISIACDL IKETKLSTEP TPDFSSYSEI AKVAQLVPTH SELVEDSSPD 751 800 ENSBTAP00000014745/1-1202 SEPVDLFSDD SIPEVPQKQD EAVILVKENL TEISSESMTG HDNKGKLSAS ENSTTRP00000004287/1-1189 SEPVDLFSDD SIPEVPQKQD EAVILVKENL IETSSESMIE HENKEKLSAS bmy_12800T0/1-926 SEPVDLFSDD SIPEVPQKQD EAVILVKENL IETSSESMIE HENKEKLSAS BACU013866/1-1006 SEPVDLFSDD SIPEVPQKQD EAVILVKENL IETSSESMIE HESKENLSAS 801 850 ENSBTAP00000014745/1-1202 PSPEGGKPYL ESFQPSLGIT KDTLAPDEVS ALTQKEKIPL QMEELNTAVY ENSTTRP00000004287/1-1189 PPPEGGKPYL ESFQPNLGTT KDTLSSNEVS TLIQKEKIPL QMEELNTAVY bmy_12800T0/1-926 PPPEGGKPYL ESFQSNLDTT KDTLSSNEVS TLIQKEKIPL QMEELNTAVY BACU013866/1-1006 PPPEGGKPYL ESFQPNLDTT KDTLSSNEVS TLIQKEKIPL QMEELNTAVY 851 900 ENSBTAP00000014745/1-1202 SSDGLFIAQE ANLRESETFS DSSPIEIIDE FPTFVSSKAD SSPTLAREYT ENSTTRP00000004287/1-1189 SNDGLYIAKE AKIRESETFS DSSPIEIIDE FPTFVSSKTD SSPTLAREYS bmy_12800T0/1-926 SNDGLFIAKE AKIRESETFS DSSPIEIIDE FPTFVSSKTD YSPTLAREYT BACU013866/1-1006 SNDGLFIVKE AKIRESETFS DSSPIEIIDE FPTFVSSKTD YSPTLAREYT 901 950 ENSBTAP00000014745/1-1202 DLEVAHKSEI ADIQDGAGSL ACAGLPHDLS FKSIQPKEE- -VHVPDEFSK ENSTTRP00000004287/1-1189 DLEISYKSEV ASVQDGAGSL PCSELPHEVS VKSVQPKDEE KVHVPDEFSK bmy_12800T0/1-926 DLEISYKSEV ASVQDGAGSL PCSELPHDVS VKSVQPKDEE KVHVPDEFSK BACU013866/1-1006 DLEISYKSEV ASVQDGAGSL PCSELPHDVS VKSVQPKDEE EVHVPDEFSK 951 1000 ENSBTAP00000014745/1-1202 DRGDVSKVPI LPPDVSALDA QAEIGSIEKP KVLVKEAERK LPSDTEKERR ENSTTRP00000004287/1-1189 DRADISKVPL LPPDVSALDA QTGIGSIVKP KVLVQEAEKK LPSGTEKEYR bmy_12800T0/1-926 DRADISKVPL LPPDVSALDA QTGIGSVVKP KVLVKEAEKK LPSDTEKEHR BACU013866/1-1006 DRADISKVPL LPPDVSALDA QTGIGSIVKP KVLVKEAEKK LPSDTEKEHR 1001 1050 ENSBTAP00000014745/1-1202 SPSAIFSAEL SKTSALVVDL LYWRDIKKTG VVFGASLFLL LSLTVFSIVS ENSTTRP00000004287/1-1189 PPSAMFSAEL SKTS--VVDL LYWRDIKKTG VVFGASLFLL LSLTVFSIVS bmy_12800T0/1-926 PPSAIFSPEL SKTS------ ----EVSSFK NFDEHICYLF LIFQYNGIIS BACU013866/1-1006 PPSAIFSAEL SKTSGQIVT- ---RDGRSEE KLEGQ----- ------GIVS 1051 1100 ENSBTAP00000014745/1-1202 VTAYIALALL SVTISFRIYK GVIQAIQKSD EGHPFRAYLE SEVAISEELV ENSTTRP00000004287/1-1189 VTAYIALALL SVTISFRIYK GVIQAIQKSD EGHPFRAYLE SEVAISEELV bmy_12800T0/1-926 SKRYKHSNLD DYCV-FTEYP YALE-IGSTG GRDQFRVAVI EERGNYERQI BACU013866/1-1006 VTAYIALALL SVTVSFRIYK GVIQAIQKSD EGHPFRAYLE SEVGISEELV 1101 1150 ENSBTAP00000014745/1-1202 QKYSNSALGH VNCTIKELRR LFLVDDLVDS LKFAVLMWVF TYVGALFNGL ENSTTRP00000004287/1-1189 QKYSNSALGH VNCTIKELRR LFLVDDLVDS LKFAVLMWVF TYVGALFNGL bmy_12800T0/1-926 VTRDGRSEEK LEGQ------ ---------- ---------- ---GELLAGL BACU013866/1-1006 QKYSNSALGH VNCTIKELRR LFLVDDLVDS LK-------- ---------- 1151 1200 ENSBTAP00000014745/1-1202 TLLILALISL FSVPVIYERH QAQIDHYLGL ANKNVKDAMA KIQAKIPGLK ENSTTRP00000004287/1-1189 TLLILALISL FSVPVIYERH QAQIDHYLGL ANKNVKDAMA KIQAKIPGLK bmy_12800T0/1-926 VIMFLKAIC- ---------- --------GA NYRNLYNILL KIGS----IK BACU013866/1-1006 ---------- ---------- -AQIDHYLGL ANKNVKDAMA KIQAKIPGLK 1201 1250 ENSBTAP00000014745/1-1202 RKAE---- ENSTTRP00000004287/1-1189 RKAE---- bmy_12800T0/1-926 YRGEKLIN BACU013866/1-1006 RKAE----