KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:53:38 2014 Check: 00 .. Name: ENSBTAP00000014768/1-343 Len: 376 Check: 7774 Weight: 1.00 Name: ENSTTRP00000000807/1-184 Len: 376 Check: 2399 Weight: 1.00 Name: bmy_12906T0/1-370 Len: 376 Check: 8764 Weight: 1.00 Name: ENSP00000297537/1-363 Len: 376 Check: 7313 Weight: 1.00 // 1 50 ENSBTAP00000014768/1-343 ---------- ---------- ---AFSIDSL IGPPPPRSGH LLYTGYPMFM ENSTTRP00000000807/1-184 ---------- ---------- ---------- ---------- ---------- bmy_12906T0/1-370 MQRAGGGGAP GGSGGGGGGG PGTAFSIDSL IGPPPPRSGH LLYTGYPMFM ENSP00000297537/1-363 MQRAGGGSAP GGNGGGGGGG PGTAFSIDSL IGPPPPRSGH LLYTGYPMFM 51 100 ENSBTAP00000014768/1-343 PYRPLVLPQA LTPAPLPAGL PPLAPLASFA GRLTNTFCAG LGQAVPSMVA ENSTTRP00000000807/1-184 ---------- ---------- ---------- ---------- ---------- bmy_12906T0/1-370 PYRPLVLPQA LAPAPLPAGL PPLAPLASFA GRLTNTFCAG LGQAVPSMVA ENSP00000297537/1-363 PYRPLVLPQA LAPAPLPAGL PPLAPLASFA GRLTNTFCAG LGQAVPSMVA 101 150 ENSBTAP00000014768/1-343 LTTALPSFAE PPDAFYGPPE L------AAA AAAATAARNH PEPGGRRPEG ENSTTRP00000000807/1-184 ---------- ---------- ---------- ---------- ---------- bmy_12906T0/1-370 LTTALPSFAE PPDAFYGPPE LAAAAAAAAA AAAATATRNN PEPGGRRPEG ENSP00000297537/1-363 LTTALPSFAE PPDAFYGPQE L----AAAAA AAAATAARNN PEPGGRRPEG 151 200 ENSBTAP00000014768/1-343 GLDTDEPLPA REEDWEGGLG EEGSLLLTRE LEILEVMLIG RVRGKSSDEE ENSTTRP00000000807/1-184 ---------- ---------- ---------- ----E----G KVY--SSDEE bmy_12906T0/1-370 GLEAEELLPA REKVADPAPP TPLHFSETFP SLPAE----G KVY--SSDEE ENSP00000297537/1-363 GLEADELLPA REKVAEPPPP PPPHFSETFP SLPAE----G KVY--SSDEE 201 250 ENSBTAP00000014768/1-343 KLEAPAGDPA GSEQEEEGSG ADSEDDAFLD SSAGGPGALL GPKPKLKGGL ENSTTRP00000000807/1-184 KLEAPAGDPA GSEQDEGGSG GDSEDDGFLD SSAGGPGALL GPKAKLTGSL bmy_12906T0/1-370 KLEPPAGDPA GSEQEEEGSG GDSEDDGFLD SSAGGPGALL GPKPKLTGSL ENSP00000297537/1-363 KLEASAGDPA GSEQEEEGSG GDSEDDGFLD SSAGGPGALL GPKPKLKGSL 251 300 ENSBTAP00000014768/1-343 GTAVEEGAP- ---STGVPAP GGKSRRRRTA FTSEQLLELE KEFHCKKYLS ENSTTRP00000000807/1-184 GTGAEEGAP- -AAAAGVTAP GGKSRRRRTA FTSEQLLELE KEFHCKKYLS bmy_12906T0/1-370 GTGAEEGAPA AAAAAGVTAP GGKSRRRRTA FTSEQLLELE KEFHCKKYLS ENSP00000297537/1-363 GTGAEEGAP- --VTAGVTAP GGKSRRRRTA FTSEQLLELE KEFHCKKYLS 301 350 ENSBTAP00000014768/1-343 LTERSQIAHA LKLSEVQVKI WFQNRRAKWK RIKAGNVSSR SGEPVRNPKI ENSTTRP00000000807/1-184 LTERSQIAHA LKLSEVQVKI WFQNRRAKWK RIKAGNGGSR SGEPVRNPKI bmy_12906T0/1-370 LTERSQIAHA LKLSEVQVKI WFQNRRAKWK RIKAGNVSSR SGEPVRNPKI ENSP00000297537/1-363 LTERSQIAHA LKLSEVQVKI WFQNRRAKWK RIKAGNVSSR SGEPVRNPKI 351 400 ENSBTAP00000014768/1-343 VVPIPVHVNR FAVRSQHQQM EQGARP ENSTTRP00000000807/1-184 VVPIPVHVSR FAARSQHQQM EQGARP bmy_12906T0/1-370 VVPIPVHVNR FAVRSQHQQI EQGARP ENSP00000297537/1-363 VVPIPVHVNR FAVRSQHQQM EQGARP