KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:42 2014 Check: 00 .. Name: ENSP00000280245/1-444 Len: 553 Check: 3000 Weight: 1.00 Name: ENSBTAP00000014789/1-413 Len: 553 Check: 8701 Weight: 1.00 Name: bmy_18593T0/1-470 Len: 553 Check: 7410 Weight: 1.00 Name: BACU002282/1-392 Len: 553 Check: 3466 Weight: 1.00 Name: ENSTTRP00000011394/1-436 Len: 553 Check: 5920 Weight: 1.00 // 1 50 ENSP00000280245/1-444 ---------- ---------- ---------- ---------- ------MENS ENSBTAP00000014789/1-413 ---------- ---------- ---------- ---------- ------META bmy_18593T0/1-470 PKSQPQLVVF IHRCSLKERS LFVLLHHQSV KVLLEYASFF LSLSNTMENT BACU002282/1-392 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011394/1-436 ---------- ---------- ---------- ---------- ------MENT 51 100 ENSP00000280245/1-444 GKANKKDTHD GPPKEIKLPT SEALLDYQCQ IKEDAVEQFM FQIKTLRKKN ENSBTAP00000014789/1-413 AKTNKRDIQD GPPKEVKLPI SEALLDYHCQ IKENALEQFM ARIKKLREKN bmy_18593T0/1-470 SKTNKKDIQD GPPKEVKLPI GEALLDYXCQ IKENAVERFM AQIKKIREKN BACU002282/1-392 ---------- ---------- ---------- ---------M AQIKKIREKN ENSTTRP00000011394/1-436 SKTNKKDIQD GPPKEVKLPI SEALLDYHCQ IKENAVERYM AQIKKMREKN 101 150 ENSP00000280245/1-444 QKYHERNSRL KEEQIWHIRH LLKELSEEKA EGLPVVTRED VEEAMKEKWK ENSBTAP00000014789/1-413 QKYHERNKRL KDEQIWHIRN LLKELSEEKS EGSVVVTREE VENAMKEKWK bmy_18593T0/1-470 RKYHERNKRL KDEQIWHIRN LLKELSEENS EGLAVVTREE VEKAMKEKWK BACU002282/1-392 QKYHERNKRL KDEQIWHIRN LLKELSEEKS EGLAVVTREE VEKAMKEKWK ENSTTRP00000011394/1-436 QKYQERNKRL KDEQIWHIRN LLKELSEEKS KGLAVVTREE VEEAMKEKWK 151 200 ENSP00000280245/1-444 FERDQEKNLR DMRMQISNAE KLFLEKLSEK EYWEEYKNVG SERHAKLITS ENSBTAP00000014789/1-413 FERDQEQNLK DMRIQISNAE KLFLEKLSEK EYWEEYKNVG SEQHGKLITS bmy_18593T0/1-470 FVRDQEQNLK DMHIQISNAE KLFLEKLSEK EYWEEYKNVG SEQHAKLITS BACU002282/1-392 FVRDQEQNLK DMRIQINNAE KLFLEKLSEK EYWEEYKNVG SEQHAKLITS ENSTTRP00000011394/1-436 FERDQEQNLK DMRIQINNAE KLFLEKLSEK EYWEEYKNVG SEQHAKLITS 201 250 ENSP00000280245/1-444 LQNDINTVKE NAEKMS---- ---------- ---------- ---------- ENSBTAP00000014789/1-413 LQNDINRVKE NAEKMS---- ---------- ---------- ---------- bmy_18593T0/1-470 LQNDINRVKE NAEKMSGQLQ ESWFRVNKKI FQGQTCGGRK KRVPPESSVT BACU002282/1-392 LQNDINRVKE NAEKMSDQFL QY-------- ---------- ---------- ENSTTRP00000011394/1-436 LQNDINRVKE NAEKMS---- ---------- ---------- ---------- 251 300 ENSP00000280245/1-444 ---------- ---------- -------EHY KITLEDTRKK IIKETLLQLD ENSBTAP00000014789/1-413 ---------- ---------- -------EQY KITLEDARKR IIRETLLQLD bmy_18593T0/1-470 LSCQQKHYAS VRMYLENSEK KKYIERREQY KITLEDDRKR IIRETLLQLN BACU002282/1-392 SPAQILKRAG VITYLV---- ------KEQY KITLEDDRKR IIRETLLQLN ENSTTRP00000011394/1-436 ---------- ---------- -------EQY KITLEDDKKR IIRETLLQLN 301 350 ENSP00000280245/1-444 QKKEWATQNA VKLIDKGSYL EIWENDWLKK EVAIHRKEVE ELKNAIHELE ENSBTAP00000014789/1-413 QKKEWATENA LRFIDKGSYR EIWENDWLKK EIANHRKEVE ELENAIHELE bmy_18593T0/1-470 QKKEWATENA IRFIDKGSYR EIWENDWLKK EIANHRKEVE ELEHAIHELE BACU002282/1-392 QKKEWATENA IRFIDKGNYR EIWENDWLKK EIANHRKEVE ELEHAIHELE ENSTTRP00000011394/1-436 QKKEWATENA IRFIDKGSYR EIWENDWLKK EIANHRKEVE ELEHAIHELE 351 400 ENSP00000280245/1-444 AENLVLIDQL SNCRLVDLKI PRYPVLHSCP TSNPRHLLLL PLESCLISAR ENSBTAP00000014789/1-413 EENLVLIDQL FNCRLVDLKI PR-------- ---------- ---------- bmy_18593T0/1-470 GENLVLIDQL FNCRLVDLKI P--------- ---------- ---------- BACU002282/1-392 GENLVLIDQL FNCRLVDLKI PR-------- ---------- ---------- ENSTTRP00000011394/1-436 GENLVLIDQL FNCRLVDLKI PRSPAPHSRP ASTPKHLLLP PLSRISAR-- 401 450 ENSP00000280245/1-444 RCWRLYLTQA AGLEVPPEEM SLELPETH-- IEEKSELQPT EVESRDLMSS ENSBTAP00000014789/1-413 ---RLYLTQA VGQEVPP-EV PLELSETHKV IPEKSDSQPV DIKSRDVSSI bmy_18593T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU002282/1-392 ---RLYLAQA VGQEVPHEEM PLELPETY-- -IEKSQLQPA EVKSRDLLSL ENSTTRP00000011394/1-436 ---RLYLAQA VGQEVAQEEM PLELPETY-- -IEKSQLQPA EVKSRDLLSL 451 500 ENSP00000280245/1-444 SDESTILHLS HENSIEDLQY VKIDKEENSG TEFGDTDMKY LLYEDEKDFK ENSBTAP00000014789/1-413 SFGSSGFRLS HKDS-RFGQL LKIDEEASSS IEFGASDMKY LLYEDEQDFK bmy_18593T0/1-470 ----SALHLS HEESSRYGQH LKIDEEESSS IEFGASDMKY LLFEDERDFK BACU002282/1-392 SLGRSALHLS HEESSRYGQH LKIDEEESSS IEFGASDMKY LLYEDERDFK ENSTTRP00000011394/1-436 ALGSSALHLS HEDSSRYSQQ LKID-EESSS IEFGASDMKY LLYEDERDFK 501 550 ENSP00000280245/1-444 DYVNLGPLGV KLMSVESKKM PIHFQEKEIP VKLYKDVRSP ESHITYKMMK ENSBTAP00000014789/1-413 DYVNLGPLEV KLMTVESKKM PIHFQEKETP VKFYEDVRSP ESHITYKMMK bmy_18593T0/1-470 DYVNLGPLEV KLMTVESKKM PIHFQEKETP VKFYEDVRSP ESHITYKMMK BACU002282/1-392 DYVNLGPLEV KLMTVESKKM PIHFQEKETP VKFYEDVRSP ESHITYKMIK ENSTTRP00000011394/1-436 DYVNLGPLEV KLMTVESKKM PIHSQE-ETP VKFYDDVRSP ESHITYKMMK 551 600 ENSP00000280245/1-444 SFL ENSBTAP00000014789/1-413 SFL bmy_18593T0/1-470 SFL BACU002282/1-392 SFL ENSTTRP00000011394/1-436 SFL