KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:53:44 2014 Check: 00 .. Name: ENSTTRP00000005714/1-472 Len: 606 Check: 5649 Weight: 1.00 Name: ENSP00000403104/1-410 Len: 606 Check: 9237 Weight: 1.00 Name: bmy_04970T0/1-509 Len: 606 Check: 4968 Weight: 1.00 Name: ENSBTAP00000014806/1-410 Len: 606 Check: 6372 Weight: 1.00 // 1 50 ENSTTRP00000005714/1-472 ---------- ---------- ---------- ---------- ---------- ENSP00000403104/1-410 ---------- ---------- ---------- ---------- ---------- bmy_04970T0/1-509 MWQPCPRRPG NEANSRAHEG CQECCPTLGC HGVPGADDVQ SRLCLVLCGL ENSBTAP00000014806/1-410 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005714/1-472 ---------- ---------- ---------- ---------- ---------- ENSP00000403104/1-410 ---------- ---------- ---------- ---------- ---------- bmy_04970T0/1-509 QAAAGAETVL RWPELHVNLS CSCLTCSRGW WQPLTRPGAL TDWPQGQRLN ENSBTAP00000014806/1-410 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005714/1-472 ---------- ---------- ---------- ----MAGACD RAPDFLSPSG ENSP00000403104/1-410 ---------- ---------- ---------- ----MPGVCD RAPDFLSPSE bmy_04970T0/1-509 PAQPLRDQSA RPRSPGEPWV APVSSLPRGG PGQTMAGPCD RAPDFLSPSG ENSBTAP00000014806/1-410 ---------- ---------- ---------- ----MAGACD KAPDFLSPSG 151 200 ENSTTRP00000005714/1-472 NQVLWPALGS VVTLNCTASV VSGPHCPLPS VQWLRDGLLL GNGSHYDLHE ENSP00000403104/1-410 DQVLRPALGS SVALNCTAWV VSGPHCSLPS VQWLKDGLPL GIGGHYSLHE bmy_04970T0/1-509 NQVLWPALGS VVTLNCTASV VSGPHCPLPS VQWLKDGLLL GNGSHYDLHE ENSBTAP00000014806/1-410 NQVLGLALGS VVTLNCTALV VSGPHCPLPS VQWLKGGLLL SNGSLYDLHE 201 250 ENSTTRP00000005714/1-472 DSWVKANWSE VLVSSVLGIN LTSTEDFRTF TCSVQNISSS SFTLWRAGLA ENSP00000403104/1-410 YSWVKANLSE VLVSSVLGVN VTSTEVYGAF TCSIQNISFS SFTLQRAGPT bmy_04970T0/1-509 DSWVKANWSE VLVSSVLRIN LTSTEDFRTF TCSVQNTSSS SFTLGRAGLA ENSBTAP00000014806/1-410 DSWVKTNWSE VLVSSVLGIN LTRAEDFGTF TCSIRNISSS SFTLWRAGLA 251 300 ENSTTRP00000005714/1-472 GHVAAVLASL LVLLVLLLAA LLYAKCRLNV LLWYQDTYGE VEMNDGKLYD ENSP00000403104/1-410 SHVAAVLASL LVLLALLLAA LLYVKCRLNV LLWYQDAYGE VEINDGKLYD bmy_04970T0/1-509 GHVAAVLASL LVLLVLLLAA LLYVKCRLSV LLWYQDTYGE VEMNDGKLYD ENSBTAP00000014806/1-410 GHAAAVLASL LALLALLLVA LLYVKCRLNV LLWYQDKYGE VEMNDGKLYD 301 350 ENSTTRP00000005714/1-472 AYVSYSDSPE DRKFVNFILK PQLERRRGYK LFLDDRDLLP RAEPSADLLV ENSP00000403104/1-410 AYVSYSDCPE DRKFVNFILK PQLERRRGYK LFLDDRDLLP RAEPSADLLV bmy_04970T0/1-509 AYVSYSDSPE DRKFVNFILK PQLERRRGYK LFLDDRDLLP RAEPSADLLV ENSBTAP00000014806/1-410 AYISYSDSPE DRKFVNFILK PQLERHRGYK LFLDDRDLLP RAEPSADLLV 351 400 ENSTTRP00000005714/1-472 NLSRCRRLVV VLSDAFLGRA WCSHSFREGL CRLLELTRRP IFITFEGQRR ENSP00000403104/1-410 NLSRCRRLIV VLSDAFLSRA WCSHSFREGL CRLLELTRRP IFITFEGQRR bmy_04970T0/1-509 NLSRCRRLVV VLSDAFLGRA WCSHSFREGL CRLLELTRRP IFITFEGQRR ENSBTAP00000014806/1-410 NLSRCRRLVV VLSDAFLGRA WCSHSFREGL CRLLELTRRP IFITFEGQRR 401 450 ENSTTRP00000005714/1-472 DPAHPALRLL RQHRHLVTLL LWRPGSVTPS SDFWKELQLA LPRKVQYRAM ENSP00000403104/1-410 DPAHPALRLL RQHRHLVTLL LWRPGSVTPS SDFWKEVQLA LPRKVQYRPV bmy_04970T0/1-509 DPAHPALRLL RQHRHLVTLL LWRPGSV--- ---------- ---------- ENSBTAP00000014806/1-410 DPAHPALRLL RQHRHLVTLL LWKPGSVTPS SDFWKELRLA LPRKVQYRSM 451 500 ENSTTRP00000005714/1-472 EGDPQTRLQD DKDPMLIVRG RVPEGRTLDP ELDPDPEGDL GMPRPHPPEA ENSP00000403104/1-410 EGDPQTQLQD DKDPMLILRG RVPEGRALDS EVDPDPEGDL GVRGPVF--- bmy_04970T0/1-509 -------MQE GQQGVTLAEG RLWAAQPQAW RY-PSP---- GVRGPVF--- ENSBTAP00000014806/1-410 EGDPQTRLQD DKDPMLIVRS RLPEGRTLDP ELDPDPEGDL GVRGPVF--- 501 550 ENSTTRP00000005714/1-472 QPELEGGAGG APKRPGGRDC SLHRGSSHCL FPEGGRPGAL GTSRISNATX ENSP00000403104/1-410 ------GEPS APPHTSGVSL GESRSSEVDV -------SDL GSRNYSARTD bmy_04970T0/1-509 ------GEPA APPHASGVSL GEGQGSEVDV -------SDL GSRNYSARTD ENSBTAP00000014806/1-410 ------GEPP ALPHAGAVSL GEGQGSEVDV -------SDL GSRNYSARTD 551 600 ENSTTRP00000005714/1-472 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XCSLQPWGLG ENSP00000403104/1-410 FYCLVSKDDM ---------- ---------- ---------- ---------- bmy_04970T0/1-509 FYCLVAEDDV ---------- ---------- ---------- ---------- ENSBTAP00000014806/1-410 FYCLVSEDDV ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000005714/1-472 EGEWAQ ENSP00000403104/1-410 ------ bmy_04970T0/1-509 ------ ENSBTAP00000014806/1-410 ------