KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:47 2014 Check: 00 .. Name: ENSP00000428864/1-604 Len: 639 Check: 3990 Weight: 1.00 Name: ENSTTRP00000012850/1-468 Len: 639 Check: 7366 Weight: 1.00 Name: ENSBTAP00000014830/1-576 Len: 639 Check: 9175 Weight: 1.00 Name: bmy_15079T0/1-462 Len: 639 Check: 50 Weight: 1.00 Name: BACU001848/1-461 Len: 639 Check: 6042 Weight: 1.00 // 1 50 ENSP00000428864/1-604 MAVLVCPASC HGLKEFRIRR GMWRLCLVYY FYPASSTLYV LRIDVLNYTS ENSTTRP00000012850/1-468 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014830/1-576 ---------- --------MS GEW------- VHPGQTLIWA VWV----LAA bmy_15079T0/1-462 ---------- --------MS GEW------- VHPGQTLIWA VWV----LAA BACU001848/1-461 --------MS REFWRTNQMS GEW------- VHPGQTLFWA VWV----LAA 51 100 ENSP00000428864/1-604 KDEGPS-AEG PQRNTRLGWI QGKQVTVLGS PVPVNVFLGV PFAAPPLGSL ENSTTRP00000012850/1-468 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014830/1-576 ATKGPATADA PARHTNLGWV QGTQASVLGN DMLVNVFLGV PYAAPPVGPL bmy_15079T0/1-462 ATEEPA-ADA PVRNTRLGWV RGKQATVLGN DMPVNVFLGI PYAAPPVGLP BACU001848/1-461 ATEGPA-ADA PVRNTRLEWS RGKQATVLGN DMPVNVFLGI PYAAPPVGLL 101 150 ENSP00000428864/1-604 RFTNPQPASP WDNLREATSY PNLCLQNSEW LLLDQHMLKV HYPKFGVSED ENSTTRP00000012850/1-468 ---------- ---------- ---CLQNSEW LFSDQHILKV HYPKLSVSED ENSBTAP00000014830/1-576 RFAKPEPLLP WDGFLNATSY PKLCFQNSEW LFTDQHILKV HYPKFRVSED bmy_15079T0/1-462 RFAKPEPALL WNDFQNAMSY PKLCLQNSEW LFSDQHILKV HYPKLSVSED BACU001848/1-461 RFAKPEPALL WNDFQNATSY PKLCLQNSEW LFSDQHILKV HYPKLSVSED 151 200 ENSP00000428864/1-604 CLYLNIYAPA HADTGSKL-- --------PV LVWFPGGAFK TGSASIFDGS ENSTTRP00000012850/1-468 CLYLNIYAPA HADTGSKF-- --------PV MVWLPGGAFE TGSASIFDGS ENSBTAP00000014830/1-576 CLYLNIYAPA HAETGSKL-- --------PV MVWLPGGAFE TGSASIFDGS bmy_15079T0/1-462 CLYLNIYAPA HADTGSKLPI RRPALLGAPV MVWLPGGVFE TGSASIFDGS BACU001848/1-461 CLYLNIYAPA HADTGSKL-- --------PV MVWLPGGAFE TGSASIFHGS 201 250 ENSP00000428864/1-604 ALAAYEDVLV VVVQYRLGIF GFFTTWDQHA PGNWAFKDQV AALSWVQKNI ENSTTRP00000012850/1-468 ALTSYEDVLV VAIQYRLGIF GFFNTGDKRA VGNWAFMDQV AALTWVQENI ENSBTAP00000014830/1-576 ALASYEDVLV VTIQYRLGIF GFFNTGDEHA RGNWAFMDQV AALIWVQENI bmy_15079T0/1-462 ALASYEDVLV VTIQYRLGIF GFFNTGNKHA LGNWAFMDQV AALTWVQENX BACU001848/1-461 ALASYEDVLV VTIQYRLGIF GFFNTGDKHA LGNWAFMDQV AALTWVQENI 251 300 ENSP00000428864/1-604 EFFGGDPSSV TIFGESAGAI SVSSLILSPM AKGLFHKAIM ESGVAIIPYL ENSTTRP00000012850/1-468 GFFGGDPH-V TMFGESAGAI SVSSLILSPM AKGLFHRAIM ESGVAIIPYL ENSBTAP00000014830/1-576 EFFGGDPRCV TIFGESAGAI SVSSLILSPM TKGLFHRAIM ESGVAIIPYL bmy_15079T0/1-462 EFFGGDPHCV TIFGESAGAI SVSSLILSPM AKGLFHRAIM ESGVAIIPYL BACU001848/1-461 EFFDGDPHCV TIFGESAGAI SVSSLILSPM AKGLFHRAIM ESGVAIIPYL 301 350 ENSP00000428864/1-604 EAHDYEKSED LQVVAHFCGN NASDSEALLR CLRTKPSKEL LTLSQKTKSF ENSTTRP00000012850/1-468 KAPDYKRNDD LQMVADTCAC NVSDSVALLQ CLWAKSSKEL LSINKKTKSF ENSBTAP00000014830/1-576 KAPDYERNDD LQTIASICDC SASDSIALLQ CLRAKSSKEL LSINQKTKSF bmy_15079T0/1-462 KAPDYERNDD LQMVADICAC NVSDSVALLQ CLRAKSSKEL LNINQKTKSF BACU001848/1-461 KAPDYERNDD LQMVADICAC NVSDSVALLQ FLRAKSSKEL LSINQKTKSF 351 400 ENSP00000428864/1-604 TRVVDGAFFP NEPLDLLSQK AFKAIPSIIG VNNHECGFLL PM-------- ENSTTRP00000012850/1-468 TRVVDGFFFP HDLLDLLAQK SFKPVPSIIG VNNPECGFLL PM-------- ENSBTAP00000014830/1-576 TRVVDGLFFP NEPLDLLAQK LFHLVPSIIG VNNHECGFLL PM-------- bmy_15079T0/1-462 TRVVDGFFFP HDPLDLLAQK SFKPVPSIIG VNNHECGFLL PVVRFPAVPP BACU001848/1-461 TRVVDGFFSP HDPLDLLAQK SFKPVPSVIG VNNHECGFPL PVMTCYAHRG 401 450 ENSP00000428864/1-604 -------KEA PEILSGSNKS LALHLIQNIL ---------H IPPQYLHLVA ENSTTRP00000012850/1-468 -------KEF PEILGGSNKS LALQLIHSIL ---------X XXXXXXXXXX ENSBTAP00000014830/1-576 -------KEF PEILWGSNKS LALQLIHSVL ---------H IPVQYLYLVA bmy_15079T0/1-462 PA---PSTEF PEILGGSNKS LALQLIHSIL ---------- ----YLCLVA BACU001848/1-461 GTCFFPPKEF PEILGGSNKS LALQLIHSIL ISCNHDVLQH IPVQYLYLVA 451 500 ENSP00000428864/1-604 NEYFHDKHSL TEIRDSLLDL LGDVFFVVPA LITARYHRDA GAPVYFYEFR ENSTTRP00000012850/1-468 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000014830/1-576 NEYFHNKHSL VDIRNRFLDL LGDVFFVIPG LVTAQYHTDA GAPVYFYEFQ bmy_15079T0/1-462 NECFYNKHSL IDTRNCFLDL LGDVFFVIPG LVTAQYH--- ---------- BACU001848/1-461 NEYFYNKHSL IDTRDRFLDL LGDVFFVIPG LVTAQYH--- ---------- 501 550 ENSP00000428864/1-604 HRPQCFEDTK PAFVKADHAD EVRFVFGGAF LKGDIVMFEG ATEEEKLLSR ENSTTRP00000012850/1-468 XXXXXXXXXX XXXXXXXXXX XIRFVFGRAF LKGDIVMS-- --------VS ENSBTAP00000014830/1-576 HRPQCLKDRK PSFVKADHTD EIRFVFGGAF LKGNIVMFEE ATEEEKGLSR bmy_15079T0/1-462 ---------- ---------- ---------- ---------- ---------- BACU001848/1-461 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000428864/1-604 KMMKYWATFA RTGNPNGNDL SLWPAYNLTE QYLQLDLNMS LGQRLKEPRV ENSTTRP00000012850/1-468 NMMLYWANFA R--NHNGEGL PLCPAYDQTE EYLQLDLNMS VGQRLKELEL ENSBTAP00000014830/1-576 KMMRYWANFA RTGNPNGKGL PLWPAYRQSE EYLQLDLNIS VGQRLKELEL bmy_15079T0/1-462 ---------- RGESP----- ---------- ---------- ---------- BACU001848/1-461 ---------- R-ELP----- ---------- ---------- ---------- 601 650 ENSP00000428864/1-604 DFWTSTIPLI LSASDMLHSP LSSLTFLSLL QPFFFFCAP ENSTTRP00000012850/1-468 EFWTDTLPLM MSSSRTLLAS LSFLTFLSLL LPFIFSFA- ENSBTAP00000014830/1-576 KFWTETLPLM MTSSGALLAS LSSSTFLFLL LPFIFSFAP bmy_15079T0/1-462 ---STAPPAR LVAAGTPVAC ---------- --------- BACU001848/1-461 ---------- ---------- ---------- ---------