KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:53:53 2014 Check: 00 .. Name: BACU011689/1-369 Len: 386 Check: 7457 Weight: 1.00 Name: ENSP00000439467/1-344 Len: 386 Check: 6960 Weight: 1.00 Name: ENSBTAP00000014845/1-344 Len: 386 Check: 7464 Weight: 1.00 Name: bmy_15934T0/1-300 Len: 386 Check: 2250 Weight: 1.00 // 1 50 BACU011689/1-369 MQLWGLFLCL VTGPQGVLSD LTLQESGPGL VKPSQTLSLT CAVSGGSVTS ENSP00000439467/1-344 ---------- MAAAGARPVE LGFAESAPAW RLRSEQFPSK V---GGRPA- ENSBTAP00000014845/1-344 ---------- MASESAGPAE LGFVEAAPSW RLRSEQFPSK V---GGRPA- bmy_15934T0/1-300 ---------- MAAASSGLTE LGFVEAAPAW RLRSEQFPSK V---GGRPA- 51 100 BACU011689/1-369 SYYWKWI--- ---------C PRPGKGLEWM EYWTGSTSYN PAFQGRISIT ENSP00000439467/1-344 -----WLGAA GLPGPQALAC ELCGRPLSFL -----LQVYA P-LPGR---- ENSBTAP00000014845/1-344 -----WLSAA GLPGPPELAC PLCGRPMAFL -----LQVYA P-LPGR---- bmy_15934T0/1-300 -----WLGAA GLPGPAGLAC AQCGRPLAFL -----LQLYA P-LPGR---- 101 150 BACU011689/1-369 ADTSKNQFSL QLSSVTTEDT AVYYCARDSE -----RKSVN QLPRRNDFYA ENSP00000439467/1-344 PDAFHRCIFL ---------- ---FCCREQP CCAGLRVFRN QLPRKNDFYS ENSBTAP00000014845/1-344 ADAFHRCLFL ---------- ---FCCRTPP CCCGLRVFRN QLPRQNDFYS bmy_15934T0/1-300 ADAFHRGLFL ---------- ---FCCRTPP CCAGLRVFRN QLPRRNDFYA 151 200 BACU011689/1-369 YEPPCEDPPP ETGESVCLQL KSGAHLCRVC GCLGPKTCSR CHRAHYCSKE ENSP00000439467/1-344 YEPPSENPPP ETGESVCLQL KSGAHLCRVC GCLGPKTCSR CHKAYYCSKE ENSBTAP00000014845/1-344 YEPPSEDPPS ETGESVYLHL KSGAHLCRVC GCSGPKRCSR CHKAHYCSKE bmy_15934T0/1-300 YEPPSEDPPP ETGESVCLQL KSGAHLCRVC GCLGPKTCSR CHKAHYCSKE 201 250 BACU011689/1-369 HQTLDWRVGH KQACTQAGDL DSTVPDHSFL FPEFEIVIET EDEIMPEVVE ENSP00000439467/1-344 HQTLDWRLGH KQACAQPDHL DHIIPDHNFL FPEFEIVIET EDEIMPEVVE ENSBTAP00000014845/1-344 HQSLDWRLGH KQACAQTDNL DNIVPDHNFL FPEFEIVIET EDEIMPEVVE bmy_15934T0/1-300 HQTLDWRLGH KQACTQA--- ---------- ---------- ---------- 251 300 BACU011689/1-369 KDDESEIIGS MGEAPEEELD SMAKHESRED RIFQKFKTKI SLEPEQILRY ENSP00000439467/1-344 KEDYSEIIGS MGEALEEELD SMAKHESRED KIFQKFKTQI ALEPEQILRY ENSBTAP00000014845/1-344 RDDESEIIGT MGEAHEEELE SMAKHESKED RIFRKFKTKI SLEPEQILRY bmy_15934T0/1-300 ---------- -GEAPEEELD SMAKHESRED RIFQKFKTKI SLEPEQILRY 301 350 BACU011689/1-369 GRGIAPIWIS GENIPQEKEI PDCPCGAKRI FEFQVMPHLL NYLKADRLGR ENSP00000439467/1-344 GRGIAPIWIS GENIPQEKDI PDCPCGAKRI LEFQVMPQLL NYLKADRLGK ENSBTAP00000014845/1-344 GRGIAPLWIS GENTPKEKDI PDCPCGAKRL FEFQVMPQLL NYLKADRLGR bmy_15934T0/1-300 GRGIAPIWIS GENIPQEKEI PDCPCGAKRI FEFQVMPHLL NYLKADRLGR 351 400 BACU011689/1-369 SVDWGVLAVF TCAESCGLGT GYTEEFVWKQ DITDAT ENSP00000439467/1-344 SIDWGILAVF TCAESCSLGT GYTEEFVWKQ DVTDTP ENSBTAP00000014845/1-344 SVDWGVLAIF TCAESCKLGI GYTEEFVWKQ DITDAA bmy_15934T0/1-300 SVDWGVLAIF TCAESCGLGT GYTEEFVWKQ DITDAA