KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:53:54 2014 Check: 00 .. Name: ENSTTRP00000016385/1-376 Len: 573 Check: 6710 Weight: 1.00 Name: bmy_09131T0/1-551 Len: 573 Check: 4017 Weight: 1.00 Name: ENSP00000288167/1-502 Len: 573 Check: 4632 Weight: 1.00 Name: ENSBTAP00000014846/1-498 Len: 573 Check: 2726 Weight: 1.00 // 1 50 ENSTTRP00000016385/1-376 ---------- ------MSLV LLSLAALCCG AMPPEP---- ---------- bmy_09131T0/1-551 MTGRQAGPPG SGERGARALV HLAHCTHGFA EPVRARLLER HSDPGIPRGP ENSP00000288167/1-502 ---------- ------MSLV LLSLAALCRS AVPREPTVQC GSETGPSPEW ENSBTAP00000014846/1-498 ---------- ------MSLV LLSLAALCCG AVPPEPTIQC GSEPGPSPEW 51 100 ENSTTRP00000016385/1-376 ---------- ---------- ---------- ---------- ---------- bmy_09131T0/1-551 CRPGHFFPYP GRAPGGRPYL GGAGGGGAR- --RCGPGRRD NSAAEGLPGP ENSP00000288167/1-502 MLQHDLIPGD LRDLRVEPVT TSVATGDYSI LMNVSWVLRA DASIRLLKAT ENSBTAP00000014846/1-498 MVRHTLTPGD LRDLRVETIK SNVDLEDSPI LMNISWILRA DASIRLLKAT 101 150 ENSTTRP00000016385/1-376 ---------- ---------- ---------- --------WT FSYIGFPVEL bmy_09131T0/1-551 RAVAGGGPAM SLVLLSLAAL CCGAMPP--- ------EPWT FSYIGFPVEL ENSP00000288167/1-502 KICVTGKSNF Q----SYSCV RCNYTEAFQT QTRPSGGKWT FSYIGFPVEL ENSBTAP00000014846/1-498 KICVMGKSHF Q----SYSCI RCNYTQAFQT QTRPSGGKWT FSYVGFPVEL 151 200 ENSTTRP00000016385/1-376 NRVYFIGAHN IPNANMNEDG PSLAVNFTSP GCLDHIMKYK KKCIEAGSLW bmy_09131T0/1-551 NTVYFVGGHN IPNANMNEDS PSLAVNFTSP GCLDHIMKYK KKCIEAGSLW ENSP00000288167/1-502 NTVYFIGAHN IPNANMNEDG PSMSVNFTSP GCLDHIMKYK KKCVKAGSLW ENSBTAP00000014846/1-498 NTVYFIGAHN IPNANMNEDG PSMAVNFTSP GCLDHVMKYK KKCIEAGSLW 201 250 ENSTTRP00000016385/1-376 DPNITACKKN ETTVEVNFTT SPLGNRYMAL IQNTTVIGTS YVLEL----- bmy_09131T0/1-551 DPNITACKKN ETMIEVNFTT SPLGNRYMAL IQNTTVIGTS YVLEVLFSPS ENSP00000288167/1-502 DPNITACKKN EETVEVNFTT TPLGNRYMAL IQHSTIIGFS QVFEP----- ENSBTAP00000014846/1-498 KPNITACKRS ANTVEVNFTT SPLGDRYMAL IQSTAVIGTS YVSE------ 251 300 ENSTTRP00000016385/1-376 ----HQKELT RTSVVV---- ---------- ---------- ---------- bmy_09131T0/1-551 FPQHHPRPQP PALLLLSKNA DSLDRLSFER ARTELSAVQI CWAILINSDK ENSP00000288167/1-502 ----HQKKQT RASVVI---- ---------- ---------- ---------- ENSBTAP00000014846/1-498 ------KELT RTSVVV---- ---------- ---------- ---------- 301 350 ENSTTRP00000016385/1-376 --QGTGESEG AV-VQLTP-- ---YFHTC-- ---------- ---------- bmy_09131T0/1-551 GKQVPGSIPG NIPVTLKPTK ADSVFPYLWQ RLHPTQRTVG LCPQTGVPFP ENSP00000288167/1-502 --PVTGDSEG AT-VQLTP-- ---YFPTCGS DCIRHKGTVV LCPQTGVPFP ENSBTAP00000014846/1-498 --HVTGESEG AV-VQLTP-- ---YFHTCGN DCIRQRGTVV QCPQTGVSSP 351 400 ENSTTRP00000016385/1-376 ----RSVLGG WLPLFLSVLL VATWVLVVGI YLTWRHERIK KTSFSTTTLL bmy_09131T0/1-551 RDHSRSVLGG WLPLLLSAGS AGGHVGAG-- ------KRIK KTSFSTTTLL ENSP00000288167/1-502 LDNNKSKPGG WLPLLLLSLL VATWVLVAGI YLMWRHERIK KTSFSTTTLL ENSBTAP00000014846/1-498 QDHDRSVLGG WLPLLLSALL VATWVLVAGI YLIWRHERIK KTSFSTTTLL 401 450 ENSTTRP00000016385/1-376 PPIKVLVVYP SEICFHHTVC YFTEFI-NHC RSEVILEKWQ KKKIAETGPV bmy_09131T0/1-551 PPIKVLVVYP SEICFHHTVC YFTEFLQNHC RSEVILEKCQ KKKIAEMGPV ENSP00000288167/1-502 PPIKVLVVYP SEICFHHTIC YFTEFLQNHC RSEVILEKWQ KKKIAEMGPV ENSBTAP00000014846/1-498 PSIKVLVVYP SEICFHHTVC YFTEFLQNRC RSEVILEKWQ KKKIAEMGPV 451 500 ENSTTRP00000016385/1-376 QWLTTQKSAT DKVIFLLSND -NTMCDGTCG KRGGSLCQNS QDLFPIALNL bmy_09131T0/1-551 QWLTTQKKAT DKVIFLLSND -NTMCDGTCG KRRGSPCENS QDLFPLAFNL ENSP00000288167/1-502 QWLATQKKAA DKVVFLLSND VNSVCDGTCG KSEGSPSENS QDLFPLAFNL ENSBTAP00000014846/1-498 QWLTTQKEAA DKVIFLLSNG -NTTCDGNCD EKEGGPCESS RDLFHLAFNL 501 550 ENSTTRP00000016385/1-376 SCSDLRSQTH LHKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_09131T0/1-551 FCSDLRSQTH LHKYVVVCFR EDDTKDNDTV LSVCPTYRLM KDATAFCTEL ENSP00000288167/1-502 FCSDLRSQIH LHKYVVVYFR EIDTKDDYNA LSVCPKYHLM KDATAFCAEL ENSBTAP00000014846/1-498 FCSDLRSQAH LHKYVVVYFR EGDIADSYRA LSVCPTYRLT KDATGFCAEL 551 600 ENSTTRP00000016385/1-376 XXXXXXXXXX XXXHACHYSC SSP bmy_09131T0/1-551 LHAKR-VSMG RRVHACHYSC SSL ENSP00000288167/1-502 LHVKQQVSAG KRSQACHDGC CSL ENSBTAP00000014846/1-498 LRAKQHVSVG RRSRTCHYSC CSL