KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:53:54 2014 Check: 00 ..
Name: ENSBTAP00000014847/1-624 Len: 741 Check: 4394 Weight: 1.00
Name: ENSP00000336842/1-624 Len: 741 Check: 5116 Weight: 1.00
Name: ENSTTRP00000016386/1-620 Len: 741 Check: 9883 Weight: 1.00
Name: bmy_09130T0/1-472 Len: 741 Check: 5261 Weight: 1.00
Name: BACU005581/1-624 Len: 741 Check: 5004 Weight: 1.00
//
1 50
ENSBTAP00000014847/1-624 ---------- ---------- ---------- ---------- ----------
ENSP00000336842/1-624 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000016386/1-620 ---------- ---------- ---------- ---------- ----------
bmy_09130T0/1-472 MLQPGPITAA SANAPSHLTL LRAAPPFRFP GMLWADSRRP SWLWADGREV
BACU005581/1-624 ---------- ---------- ---------- ---------- ----------
51 100
ENSBTAP00000014847/1-624 ---------- ---------- ----MTQAEK GEAENGKEKG GEKEKEQRGV
ENSP00000336842/1-624 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV
ENSTTRP00000016386/1-620 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV
bmy_09130T0/1-472 APAPRPALWR SRCVLEAGGA SAAEMTQAEK GDTENGKEKG GEKEKEQRGV
BACU005581/1-624 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV
101 150
ENSBTAP00000014847/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ----------
ENSP00000336842/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ----------
ENSTTRP00000016386/1-620 KRPIVPALVP ESLQE----- ---------- ---------- ----------
bmy_09130T0/1-472 KRPIVPALVP ESLQEVRRRG RALDSASGRG GGPRSWARGG GWRTAGVFGR
BACU005581/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ----------
151 200
ENSBTAP00000014847/1-624 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASVPH VIARRHKQQG
ENSP00000336842/1-624 --------QI QSNFIIVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG
ENSTTRP00000016386/1-620 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG
bmy_09130T0/1-472 PPRLLPDQQI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG
BACU005581/1-624 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG
201 250
ENSBTAP00000014847/1-624 QPLYKDSWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP
ENSP00000336842/1-624 QPLYKDSWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP
ENSTTRP00000016386/1-620 QPLYKDNWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP
bmy_09130T0/1-472 QPL------- ---------- ---------- ---------- ----------
BACU005581/1-624 QPLYKDNWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP
251 300
ENSBTAP00000014847/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EFLVGEEALY VNPLDCYNIH
ENSP00000336842/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EYLVGEEALY VNPLDCYNIH
ENSTTRP00000016386/1-620 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EFLVGEEALY VNPLDCYNIH
bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ----------
BACU005581/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EHLVGEEALY VNPLDCYNIH
301 350
ENSBTAP00000014847/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI
ENSP00000336842/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI
ENSTTRP00000016386/1-620 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI
bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ----------
BACU005581/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI
351 400
ENSBTAP00000014847/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATFG SGLSSTCIVD
ENSP00000336842/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD
ENSTTRP00000016386/1-620 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD
bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ----------
BACU005581/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD
401 450
ENSBTAP00000014847/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ
ENSP00000336842/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ
ENSTTRP00000016386/1-620 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ
bmy_09130T0/1-472 ---------- ---------- -LCLAYGGSD VSRCFYWLMQ RAGFPYRECQ
BACU005581/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ
451 500
ENSBTAP00000014847/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD
ENSP00000336842/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD
ENSTTRP00000016386/1-620 LTNKMDCLLL QHLKETFCHL D-DISGLQDH EFQIRHPDSP ALLYQFRLGD
bmy_09130T0/1-472 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD
BACU005581/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD
501 550
ENSBTAP00000014847/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEQ YLLATQSKQE
ENSP00000336842/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE
ENSTTRP00000016386/1-620 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE
bmy_09130T0/1-472 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE
BACU005581/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE
551 600
ENSBTAP00000014847/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GPSQGDCLMA
ENSP00000336842/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSAQGDGLMA
ENSTTRP00000016386/1-620 QSAKATADRK SASKPIGFEG DLRGQSSDLP -RLHSQEVDL GSSQGDCLMA
bmy_09130T0/1-472 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSSQGDCLMA
BACU005581/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSSQGDCLMA
601 650
ENSBTAP00000014847/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDETKKKMYS
ENSP00000336842/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDDTKKKMYS
ENSTTRP00000016386/1-620 GNDS-EALTA LMSR-TAISL XXXXXXXXXX XXXXXXXXXX SDEAKKKMYS
bmy_09130T0/1-472 GNDSEEALTA LMSRKTAISL ---------- ---------- ----------
BACU005581/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDETKKKMYS
651 700
ENSBTAP00000014847/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL
ENSP00000336842/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL
ENSTTRP00000016386/1-620 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL
bmy_09130T0/1-472 ---------- ---------- -ILNKMPPSF RRIIENVDVI TRPKDMDPRL
BACU005581/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL
701 750
ENSBTAP00000014847/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W
ENSP00000336842/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W
ENSTTRP00000016386/1-620 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W
bmy_09130T0/1-472 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W
BACU005581/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W