KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:54 2014 Check: 00 .. Name: ENSBTAP00000014847/1-624 Len: 741 Check: 4394 Weight: 1.00 Name: ENSP00000336842/1-624 Len: 741 Check: 5116 Weight: 1.00 Name: ENSTTRP00000016386/1-620 Len: 741 Check: 9883 Weight: 1.00 Name: bmy_09130T0/1-472 Len: 741 Check: 5261 Weight: 1.00 Name: BACU005581/1-624 Len: 741 Check: 5004 Weight: 1.00 // 1 50 ENSBTAP00000014847/1-624 ---------- ---------- ---------- ---------- ---------- ENSP00000336842/1-624 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016386/1-620 ---------- ---------- ---------- ---------- ---------- bmy_09130T0/1-472 MLQPGPITAA SANAPSHLTL LRAAPPFRFP GMLWADSRRP SWLWADGREV BACU005581/1-624 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000014847/1-624 ---------- ---------- ----MTQAEK GEAENGKEKG GEKEKEQRGV ENSP00000336842/1-624 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV ENSTTRP00000016386/1-620 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV bmy_09130T0/1-472 APAPRPALWR SRCVLEAGGA SAAEMTQAEK GDTENGKEKG GEKEKEQRGV BACU005581/1-624 ---------- ---------- ----MTQAEK GDTENGKEKG GEKEKEQRGV 101 150 ENSBTAP00000014847/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ---------- ENSP00000336842/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ---------- ENSTTRP00000016386/1-620 KRPIVPALVP ESLQE----- ---------- ---------- ---------- bmy_09130T0/1-472 KRPIVPALVP ESLQEVRRRG RALDSASGRG GGPRSWARGG GWRTAGVFGR BACU005581/1-624 KRPIVPALVP ESLQE----- ---------- ---------- ---------- 151 200 ENSBTAP00000014847/1-624 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASVPH VIARRHKQQG ENSP00000336842/1-624 --------QI QSNFIIVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG ENSTTRP00000016386/1-620 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG bmy_09130T0/1-472 PPRLLPDQQI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG BACU005581/1-624 --------QI QSNFIVVIHP GSTTLRIGRA TDTLPASIPH VIARRHKQQG 201 250 ENSBTAP00000014847/1-624 QPLYKDSWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP ENSP00000336842/1-624 QPLYKDSWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP ENSTTRP00000016386/1-620 QPLYKDNWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP bmy_09130T0/1-472 QPL------- ---------- ---------- ---------- ---------- BACU005581/1-624 QPLYKDNWLL REGLNKPESN EQRQNGLKMV DQAIWSKKMS NGTRRIPVSP 251 300 ENSBTAP00000014847/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EFLVGEEALY VNPLDCYNIH ENSP00000336842/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EYLVGEEALY VNPLDCYNIH ENSTTRP00000016386/1-620 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EFLVGEEALY VNPLDCYNIH bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU005581/1-624 EQARSYNKQM RPAILDHCSG NKWTNTSHHP EHLVGEEALY VNPLDCYNIH 301 350 ENSBTAP00000014847/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI ENSP00000336842/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI ENSTTRP00000016386/1-620 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU005581/1-624 WPIRRGQLNI HPGPGGSLTA VLADIEVIWS HAIQKYLEIP LKDLKYYRCI 351 400 ENSBTAP00000014847/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATFG SGLSSTCIVD ENSP00000336842/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD ENSTTRP00000016386/1-620 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD bmy_09130T0/1-472 ---------- ---------- ---------- ---------- ---------- BACU005581/1-624 LLIPDIYNKQ HVKELVNMIL MKMGFSGIVV HQESVCATYG SGLSSTCIVD 401 450 ENSBTAP00000014847/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ ENSP00000336842/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ ENSTTRP00000016386/1-620 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ bmy_09130T0/1-472 ---------- ---------- -LCLAYGGSD VSRCFYWLMQ RAGFPYRECQ BACU005581/1-624 VGDQKTSVCC VEDGVSHRNT RLCLAYGGSD VSRCFYWLMQ RAGFPYRECQ 451 500 ENSBTAP00000014847/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD ENSP00000336842/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD ENSTTRP00000016386/1-620 LTNKMDCLLL QHLKETFCHL D-DISGLQDH EFQIRHPDSP ALLYQFRLGD bmy_09130T0/1-472 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD BACU005581/1-624 LTNKMDCLLL QHLKETFCHL DQDISGLQDH EFQIRHPDSP ALLYQFRLGD 501 550 ENSBTAP00000014847/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEQ YLLATQSKQE ENSP00000336842/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE ENSTTRP00000016386/1-620 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE bmy_09130T0/1-472 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE BACU005581/1-624 EKLQAPMALF YPATFGIVGQ KMTTLQHRSQ GDPEDPHDEH YLLATQSKQE 551 600 ENSBTAP00000014847/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GPSQGDCLMA ENSP00000336842/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSAQGDGLMA ENSTTRP00000016386/1-620 QSAKATADRK SASKPIGFEG DLRGQSSDLP -RLHSQEVDL GSSQGDCLMA bmy_09130T0/1-472 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSSQGDCLMA BACU005581/1-624 QSAKATADRK SASKPIGFEG DLRGQSSDLP ERLHSQEVDL GSSQGDCLMA 601 650 ENSBTAP00000014847/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDETKKKMYS ENSP00000336842/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDDTKKKMYS ENSTTRP00000016386/1-620 GNDS-EALTA LMSR-TAISL XXXXXXXXXX XXXXXXXXXX SDEAKKKMYS bmy_09130T0/1-472 GNDSEEALTA LMSRKTAISL ---------- ---------- ---------- BACU005581/1-624 GNDSEEALTA LMSRKTAISL FEGKALGLDK AILHSIDCCS SDETKKKMYS 651 700 ENSBTAP00000014847/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL ENSP00000336842/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL ENSTTRP00000016386/1-620 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL bmy_09130T0/1-472 ---------- ---------- -ILNKMPPSF RRIIENVDVI TRPKDMDPRL BACU005581/1-624 SILVVGGGLM FHKAQEFLQH RILNKMPPSF RRIIENVDVI TRPKDMDPRL 701 750 ENSBTAP00000014847/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W ENSP00000336842/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W ENSTTRP00000016386/1-620 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W bmy_09130T0/1-472 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W BACU005581/1-624 IAWKGGAVLA CLDTTQELWI YQREWQRFGV RMLRERAAFV W