KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:53:57 2014 Check: 00 .. Name: ENSP00000359469/1-1327 Len: 1328 Check: 8264 Weight: 1.00 Name: ENSTTRP00000008881/1-1327 Len: 1328 Check: 6980 Weight: 1.00 Name: bmy_17254T0/1-1264 Len: 1328 Check: 6919 Weight: 1.00 Name: BACU006374/1-1303 Len: 1328 Check: 7075 Weight: 1.00 Name: ENSBTAP00000014875/1-1327 Len: 1328 Check: 1969 Weight: 1.00 // 1 50 ENSP00000359469/1-1327 MRSFLQQDVN KTKSRLNVLN GLANNMDDLK INTDITGAKE ELLDDNNFIS ENSTTRP00000008881/1-1327 MRLFLQRDVN KTKSRLNVLN GLATNMDDLK INTDITGAKE ELLDDNSFIS bmy_17254T0/1-1264 ---------- ---------- -----MDDLK INTDITGAKE ELLDDDSFIS BACU006374/1-1303 ---------- ---------- -----MDDLK INTDITGAKE ELLDDNSFIS ENSBTAP00000014875/1-1327 MRLFLQRDVN KTKSRLNVLN GLTNNMDDLK INTDVTGAKE ELLDDNSFIS 51 100 ENSP00000359469/1-1327 DKESGVHKPK DCQTSFQKNN TLTLPEELSK DKSENALSGG QSSLFIHAGA ENSTTRP00000008881/1-1327 DKESGVHKPK DCQTSFQKNN TFTLPEELSK DKSEKALSGG QSTLFIHAGA bmy_17254T0/1-1264 DKESGVHKPK DCQTSFQKNN TFTLPEELSK DKSEKALSGG QSTLFIHAGA BACU006374/1-1303 DKESGVHKPK DCQTSFQKNN TFTLPEELSK DKSENALSGG QSTLFIHAGA ENSBTAP00000014875/1-1327 DKESGVHKPK DCQASFQKNN TFTLPEELSK DKSEKALSGG QSTLFIHAGA 101 150 ENSP00000359469/1-1327 PTVSSENFIL PKGAAVNGPV SHSSLTKTSN MNKGSVSLTT GQPVDQPTTE ENSTTRP00000008881/1-1327 PTVSSENFIL PKGAAVNGPV SHSSLTKTSN MNKGSVSLTT GQPVDQPTTE bmy_17254T0/1-1264 PTVSSENFIL PKGAAVNGPV SHSSLTKTSN MNKGSVSLTT GQPVDQPTTE BACU006374/1-1303 PTVSSENFIL PKGAAVNGPV SHSSLTKTSN MNKGSVSLTT GQPVDQPTTE ENSBTAP00000014875/1-1327 PTVSSENFIL PKGAAVNGPV SHSSLTKTSN MNKGSVSLTT GQPVDQPTTE 151 200 ENSP00000359469/1-1327 SCSTLKVAAD LQLSTPQKAS QHQVLFLLSD VAHAKNPTHS NKKLPTSASV ENSTTRP00000008881/1-1327 SCSTLKVAAD LQLSTPQKAS QHQVLFLLSD VAHAKNPTHS IKKLPTSASI bmy_17254T0/1-1264 SCSTLKVAAD LQLSTPQKAS QHQVLFLLSD VAHAKNPTHS IKKLPTSASI BACU006374/1-1303 SCSTLKVAAD LQLSTPQKAS QHQVLFLLSD VAHAKNPTHS IKKLPTSASI ENSBTAP00000014875/1-1327 SCSGLKVAAD LQLSTPQKAS QHQVLFLLSD VAHAKNPTHS IKKLPTSASI 201 250 ENSP00000359469/1-1327 GCDIQNSVGS NIKSDGTLIN QVEVGEDGED LLVKDDCVNT VTGISSGTDG ENSTTRP00000008881/1-1327 GCDIQNSVGS NIKSDSTLIN QVEVGEDSED LLVKDDCVST LTGISSGTDE bmy_17254T0/1-1264 GCDIQNSVGS SIKSDSTLIN QVEVGEDSED LLVKDDCVST LTGISSGTDE BACU006374/1-1303 GCDIQNSVGS SIKSDSTLIN QVEVGEDSED LLVKDDCVST LTGISSGTDE ENSBTAP00000014875/1-1327 GCDIQNSVGS GIKSDSTLIN QVEVGEDSED LLVKNDCVST LTGISSGTDE 251 300 ENSP00000359469/1-1327 FRSENDTNWD PQKEFIQFLM TNEETVDKAP PHSKIGLEKK RKRKMDVSKI ENSTTRP00000008881/1-1327 FRSENDTNWD PQKEFIQFLM TNEDTVDKAP VHSKVGLEKK RKRKMDVSKI bmy_17254T0/1-1264 FRSENDTNWD PQKEFIQFLM TNEDTVDKAP VHSKVGLEKK RKRKMDVSKI BACU006374/1-1303 FRPENDTNWD PQKEFIQFLM TNEDTVDKAP VHSKVGLEKK RKRKMDVSKI ENSBTAP00000014875/1-1327 FRSDNDTNWD PQKEFIQFLI TNDDTVDKAP VHSKVGLEKK RKRKMDVSKI 301 350 ENSP00000359469/1-1327 TRYTEDCFSD SNCVPNKSKM QEVDFLEQNE ELQAVDSQKY ALSKVKPEST ENSTTRP00000008881/1-1327 TRYTEDCFND SNCVPNKSKM LEVDFMEQNE ELQAVDSQKY TLSKVKPEST bmy_17254T0/1-1264 TRYTEDCFND SNCVPNKSKM LEVDFMEQNE ELQAMDSQKY ALSKVKPEST BACU006374/1-1303 TRYTEDCFND SNCVPNKSKM LEVDFMEQNE ELQAIDSQKY ALSKVKPEST ENSBTAP00000014875/1-1327 TRYTEDCFSD SNCVPNKSKM LEVDFMEQNE DVQAIDSRTY ALSQVKPESA 351 400 ENSP00000359469/1-1327 DEDLESVDAF QHLIYNPDKC GEESSPVHTS TFLSNTLKKK CEESDSESPA ENSTTRP00000008881/1-1327 DEDLESVDTF QHLIYNPDKC GEDSSPVHTG TFLSNTLKKK CEESDSESPA bmy_17254T0/1-1264 DEDLESVDTF QHLIYNPDKC GEDGSPVHTG TFLSNTLKKK CEESDSESPA BACU006374/1-1303 DEDLESVDTF QHLIYNPDKC GEDSSPVHTG TFLSNTLKKK CEESDSESPA ENSBTAP00000014875/1-1327 DEDLESVDTF QHLIFNSDKC GEDSSPVHTS TFLSNTLKKK CEESDSESPV 401 450 ENSP00000359469/1-1327 TFSTEEPSFY PCTKCNVNFR EKKHLHRHMM YHLDGNSHFR HLNVPRPYAC ENSTTRP00000008881/1-1327 TFSTEEPSFY PCTKCNVNFR EKKHLHRHMM YHLDGNSHFR HLNVPRPYAC bmy_17254T0/1-1264 TFSTEEPSFY PCTKCNVNFR EKKHLHRHMM YHLDGNSHFR HLNVPRPYAC BACU006374/1-1303 TFSTEEPSFY PCTKCNVNFR EKKHLHRHMM YHLDGNSHFR HLNVPRPYAC ENSBTAP00000014875/1-1327 TFSTEEPSFY PCTKCNVNFR EKKHLHRHMM YHLDGNSHFR HLNVPRPYAC 451 500 ENSP00000359469/1-1327 RECGRTFRDR NSLLKHMIIH QERRQKLMEE IRELKELQDE GRSARLQCPQ ENSTTRP00000008881/1-1327 RECGRTFRDR NSLLKHMIIH QERRQKLMEE IRELKELQDE GRSARLXXXX bmy_17254T0/1-1264 RECGRTFRDR NSLLKHMIIH QERRQKLMEE IRELKELQDE GRSARLQCPQ BACU006374/1-1303 RECGRTFRDR NSLLKHMIIH QERRQKLMEE IRELKELQDE GRSARLQCPQ ENSBTAP00000014875/1-1327 RECGRTFRDR NSLLKHMIIH QERRQKLMEE IRELKELQDE GRSARLQCPQ 501 550 ENSP00000359469/1-1327 CVFGTNCPKT FVQHAKTHEK DKRYYCCEEC NFMAVTENEL ECHRGIAHGA ENSTTRP00000008881/1-1327 CVFGTNCPKT FVQHAKTHEK DKRYYCCEEC NFMAVTENEL ECHRGIAHGA bmy_17254T0/1-1264 CVFGTNCPKT FVQHAKTHEK DKRYYCCEEC NFMAVTENEL ECHRGIAHGA BACU006374/1-1303 CVFGTNCPKT FVQHAKTHEK DKRYYCCEEC NFMAVTENEL ECHRGIAHGA ENSBTAP00000014875/1-1327 CVFGTNCPKT FVQHAKTHEK DKRYYCCEEC NFMAVTENEL ECHRGIAHGA 551 600 ENSP00000359469/1-1327 VVKCPMVTSD IAQRKTQKKT FMKDSVVGSS KKSATYICKM CPFTTSAKSV ENSTTRP00000008881/1-1327 VVKCPIVSSD VAQRKTQKKT FMKDPVIGSS KKSATYICKM CPFTTSARSI bmy_17254T0/1-1264 VVKCPIVSSD VAQRKTQKKT FMKDPVTGSS KKSATYICKM CPFTTSARSI BACU006374/1-1303 VVKCPIVSSD IAQRKTQKKT FMKDPIIGSS KKSATYICKM CPFTTSARSI ENSBTAP00000014875/1-1327 VVKCPIVSSD VVQRKTHKKA FMKDPVIGSS KKSATYICKM CPFTTSVKSI 601 650 ENSP00000359469/1-1327 LKKHTEYLHS SSCVDSFGSP LGLDKRKNDI LEEPVDSDST KTLTKQQSTT ENSTTRP00000008881/1-1327 LKKHMEYLHS SSCVDSFDSP LGLDKRKSNI IEEPIDTDSP KPLTKQQSTT bmy_17254T0/1-1264 LKKHMEYLHS SSCIDSFGSP LGLDKRKSDI IEEPIDTDSP KPLTKQQSTT BACU006374/1-1303 LKKHMEYLHS SSCIDSFGSP LGLDKRKSDI IEEPIDTDSP KPLTKQQSTT ENSBTAP00000014875/1-1327 FKKHMEYLHS SSCIDSFGSP LGLDKRKSDI IEEPIDTDSP KPLTKQQSTT 651 700 ENSP00000359469/1-1327 FPKNSALKQD VKRTFGSTSQ SSSFSKIHKR PHRIQKARKS IAQSGVNMCN ENSTTRP00000008881/1-1327 FPKNSALKQD VKRTFGSSSQ SSNFSKFHKR PHRIQKARKS IAQSGVNVCN bmy_17254T0/1-1264 FPKNSALKQD VKRTFGSSSQ SSNFSKFHKR PHRIQKARKS IAQSGVNVCN BACU006374/1-1303 FPKNSALKQD VKRTFGSSSQ SSNFSKFHKR PHRIQKARKS IAQSGVNVCN ENSBTAP00000014875/1-1327 FPKNSALKQD VKRTFGSSSQ SSNFSKFHKR PHRIQKARKS IAQSGVNVCS 701 750 ENSP00000359469/1-1327 QNSSPHKNVT IKSSVDQKPK YFHQAAKEKS NAKANSHYLY RHKYENYRMI ENSTTRP00000008881/1-1327 QNNSPHKTVM IKSSIDQKPK YFHQAAKEKP NAKANSNYLY RHKYENYRMI bmy_17254T0/1-1264 QNNSPHKTVM IKSSIDQKPK YFHQAAKEKS NAKANSNYLY RHKYENYRMI BACU006374/1-1303 QNNSPHKTVM IKSSIDQKPK YFHQAAKEKS NAKANSNYLY RHKYENYRMI ENSBTAP00000014875/1-1327 QNSSPHKTVM IKSSIDQKPK YFHQTAKEKS NAKANSNYLY RHKYENYRMI 751 800 ENSP00000359469/1-1327 KKSGESYPVH FKKEEASSLN SLHLFSSSSN SHNN-FISDP HKPDAKRPES ENSTTRP00000008881/1-1327 KKSGESYPLH FKKEEASSLN SLHLFSSSSN SHNNSFISDP HNSDTKRPES bmy_17254T0/1-1264 KKSGESYPLH FKKEESSSLN SLHLFSSSSN SHNNSFISDP HNSDTKRPES BACU006374/1-1303 KKSGESYPLH FKKEEASSLN SLHLFSSSSN SHNNSFISDP HNSDTKRPES ENSBTAP00000014875/1-1327 KKSGESYPLH FKKEEASSLN SLHLF-SSSN SHNNSFISDP HNSDTKRPEG 801 850 ENSP00000359469/1-1327 FKDHRRVAVK RVIKESKKES SVGGEDLDSY PDFLHKMTVV VLQKLNSAEK ENSTTRP00000008881/1-1327 FRDHRRVAVK RVVKESKKQS SV-GEDLDSY PDFLHKMTVV VLQKLNSAEK bmy_17254T0/1-1264 FRDHRRVAVK RVVKESKKQS SVGGEDLDSY PDFLHKMTVV VLQKLNSAEK BACU006374/1-1303 FRDHRRVAVK RVGKESKKQS SVGGEDLDSY PDFLHKMTVV VLQKLNSAEK ENSBTAP00000014875/1-1327 FKDHRRVAVK RVVKESKKES SVGGEDLDSY PDFLHKMTVV VLQKLNSTEK 851 900 ENSP00000359469/1-1327 KDSYETEDES SWDNVELGDY TTQAIEDETY SDINQEHVNL FPLFKSKVEG ENSTTRP00000008881/1-1327 KDSYETEDES SWDNVELGDY TTQTIEDETY NDINQEHVNL FPLFKSKVEG bmy_17254T0/1-1264 KDSYETEDES SWDNVELGDY TTQTIEDETY NDINQEHVNL FPLFKSKVEG BACU006374/1-1303 KDSYETEDES SWDNVELGDY TTQTIEDETY NDINQEHVNL FPLFKSKVEG ENSBTAP00000014875/1-1327 KDSYETEDES SWDNVELGDY TTQTIEDETY HDINQEHVNI FPLFKSKVEG 901 950 ENSP00000359469/1-1327 QEPGENATLS YDQNDGFYFE YYEDTGSNNF LHEIHDPQHL ETADASLSKH ENSTTRP00000008881/1-1327 QEPGENATLS YDQNDGFYFE YYEDAGTNNF LHEIHDPQHL ENAETSLSKH bmy_17254T0/1-1264 QEPGENATLS YDQNDGFYFE YYEDAGTNNF LHEIHDPQHL ENAETSLSKH BACU006374/1-1303 QDPGENATLS YDQNDGFYFE YYEDAGTNNF LHEIHDPQHL ENAETSLSKH ENSBTAP00000014875/1-1327 QQSGENATLS YDQNDGFYFE YYEDGGTNNF LHEIHDPQHL ENAETALSKH 951 1000 ENSP00000359469/1-1327 SSVFHWTDLS LEKKSCPYCP ATFETGVGLS NHVRGHLHRA GLSYEARHVV ENSTTRP00000008881/1-1327 SSVFHWTDLS LEKKSCPYCP ATFETGVGLS NHVRGHLHRA GLSYEARHVV bmy_17254T0/1-1264 SSVFHWTDLS LEKKSCPYCP ATFETGVGLS NHVRGHLHRA GLSYEARHVV BACU006374/1-1303 SSVFHWTDLS LEKKSCPYCP ATFETGVGLS NHVRGHLHRA GLSYEARHVV ENSBTAP00000014875/1-1327 SSVFHWTDLS LEKKSCPYCP ATFETGVGLS NHVRGHLHRA GLSYEARHVV 1001 1050 ENSP00000359469/1-1327 SPEQIATSDK MQHFKRTGTG TPVKRVRKAI EKSETTSEHT CQLCGGWFDT ENSTTRP00000008881/1-1327 SPEQIATSDK MQHFKRTGTG TPVKRVRKAI EKSETTSEHT CQLCGGWFDT bmy_17254T0/1-1264 SPEQIATSDK MQHFKRTGTG TPVKRVRKAI EKSETTSEHT CQLCGGWFDT BACU006374/1-1303 SPEQIATSDK MQHFKRTGTG TPVKRVRKAI EKSETTSEHT CQLCGGWFDT ENSBTAP00000014875/1-1327 SPEQIATSDK MQHFKRTGTG TPIKRVRKAI EKSETTSEHT CQLCGGWFDT 1051 1100 ENSP00000359469/1-1327 KIGLSNHVRG HLKRLGKTKW DAHKSPICVL NEMMQNEEKY EKILKALNSR ENSTTRP00000008881/1-1327 KIGLSNHVRG HLKRLGKTKW DAHKSPICVL NEMMQNEEKY EKILKALNSR bmy_17254T0/1-1264 KIGLSNHVRG HLKRLGKTKW DAHKSPICVL NEMMQNEEKY EKILKALNSR BACU006374/1-1303 KIGLSNHVRG HLKRLGKTKW DAHKSPICVL NEMMQNEEKY EKILKALNSR ENSBTAP00000014875/1-1327 KIGLSNHVRG HLKRLGKTKW DAHKSPICVL NEMMQNEEKY EKILKALNSR 1101 1150 ENSP00000359469/1-1327 RIIPRPFVAQ KLASSDDFIS QNVIPLEAYR NGLKTEALSV SASEEEGLNF ENSTTRP00000008881/1-1327 RIIPRPFVAQ KLASSDDFLS QNVIPLEAYR NGLKTEALSV SASEEEGLSF bmy_17254T0/1-1264 RIIPRPFVAQ KLASSDDFLS QNVIPLEAYR NGLKTEALSV SASEEEGLSF BACU006374/1-1303 RIIPRPFVAQ KLASSDDFLS QNVIPLEAYR NGLKTEALSV SASEEEGLSF ENSBTAP00000014875/1-1327 RIIPRPFVAQ KLASSDDFLS QNVIPLEAYR NGLKTEALSV SASEEEGLSF 1151 1200 ENSP00000359469/1-1327 LNEYDETKPE LPSGKKNQSL TLIELLKNKR MGEERNSAIS PQKIHNQTAR ENSTTRP00000008881/1-1327 LNEYDETKPE LPSGKKNQSL TLIELLKNKR MGEEKNXXXX XXXXXXXXXX bmy_17254T0/1-1264 LNEYDETKPE LPSGKKNQSL TLIELLKNKR MGEEKNSSIS PQKIHNQTAR BACU006374/1-1303 LNEYDETKPE LPSGKKNQSL TLIELLKNKR MGEEKNSSVS PQKIHNQTAR ENSBTAP00000014875/1-1327 LNEYDETKPE LPSGKKNQSL TLIELLKNKR MGEEKNSSVS PQKIHNQTAR 1201 1250 ENSP00000359469/1-1327 KRFVQKCVLP LNEDSPLMYQ PQKMDLTMHS ALDCKQKKSR SRSGSKKKML ENSTTRP00000008881/1-1327 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLDCKQKKSR SRSGSKKKML bmy_17254T0/1-1264 KRFVQKCVLP LNEDSPLMYQ PQKMDFTMHS G--------- -----KRTFM BACU006374/1-1303 KRFVQKCVLP LNEDSPLMYQ PQKMDFTMHS ALDCKQKKSR SRSGSKKKML ENSBTAP00000014875/1-1327 KRFVQKCVLP LNEDSPLMYQ PQKMDFTMHS ALDCKQKKSR SRSGSKKKLL 1251 1300 ENSP00000359469/1-1327 TLPHGADEVY ILRCRFCGLV FRGPLSVQED WIKHLQRHIV NANLPRTGAG ENSTTRP00000008881/1-1327 TLPHGADEVY ILRCRFCGLV FRGPLSVQED WIKHLQRHIV NANLPRTGAG bmy_17254T0/1-1264 TILHNLNTVN VYL---SGIC VKNTFS--ES F--YLSCFFA EQRL------ BACU006374/1-1303 TLPHGADEVY ILRCRFCGLV FRGPLSVQED WIKHLQRHIV NANLPRTGAG ENSBTAP00000014875/1-1327 TLPHGADEVY ILRCRFCGLV FRGPLSVQED WIKHLQRHIV NANLPRTGAG 1301 1350 ENSP00000359469/1-1327 MVEVTSLLKK PASITETSFS LLMAEAAS ENSTTRP00000008881/1-1327 MVEVTSLLKK PASITETSFS LLMAEAAS bmy_17254T0/1-1264 ---VILLFLH KSSVDVHRH- -------- BACU006374/1-1303 MVEVTSLLKK PASITETSFS LLMAEAAS ENSBTAP00000014875/1-1327 MVEVTSLLKK PASITETSFS LLMAEAAS