KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:03 2014 Check: 00 .. Name: ENSBTAP00000014907/1-273 Len: 308 Check: 2816 Weight: 1.00 Name: ENSP00000356623/1-270 Len: 308 Check: 1789 Weight: 1.00 Name: bmy_01784T0/1-307 Len: 308 Check: 7444 Weight: 1.00 Name: ENSTTRP00000012933/1-272 Len: 308 Check: 9197 Weight: 1.00 Name: BACU014352/1-254 Len: 308 Check: 7296 Weight: 1.00 // 1 50 ENSBTAP00000014907/1-273 ---------- -MADHMMAMN HGRFPDGTNG LHHHPAHRMG MGQFPSPHHH ENSP00000356623/1-270 ---------- -MADHMMAMN HGRFPDGTNG LHHHPAHRMG MGQFPSPHHH bmy_01784T0/1-307 MIRSRSASGL EMADHMMAMN HGRFPDGTNG LHHHPAHRMG VGQFPSPHHH ENSTTRP00000012933/1-272 ---------- -MADHMMAMN HGRFPDGTNG LHHHPAHRMG VGQFPSPHHH BACU014352/1-254 MIRSRSASGL EMADHMMAMN HGRFPDGTNG LHHHPAHRMG VGQFPSPHHH 51 100 ENSBTAP00000014907/1-273 QQQQPQHAFN ALMGEHIHYG ASNMNASSGI RHAMGPGTVN GGHPPSALAP ENSP00000356623/1-270 QQQQPQHAFN ALMGEHIHYG AGNMNATSGI RHAMGPGTVN GGHPPSALAP bmy_01784T0/1-307 -QQQPQHAFN ALMGEHIHYG ASNMNATSGI RHAMGPGTVN GGHPPSALAP ENSTTRP00000012933/1-272 -QQQPQHAFN ALMGEHIHYG ASNMNATSGI RHAMGPGTVN GGHPPSALAP BACU014352/1-254 -QQQPQHAFN ALMGEHIHYG ASNMNATSGI RHAMGPGTVN GGHPPSALAP 101 150 ENSBTAP00000014907/1-273 AARFNNSQFM GPPVASQGGS LPASMQLQKL NNQYFNHHPY PHNHYMPDLH ENSP00000356623/1-270 AARFNNSQFM GPPVASQGGS LPASMQLQKL NNQYFNHHPY PHNHYMPDLH bmy_01784T0/1-307 GARFNSSQFM GPPVASQGGS LPASMQLQKL NNQYFNHHPY PHNHYMPDLH ENSTTRP00000012933/1-272 GARFNSSQFM GPPVASQGGS LPASMQLQKL NNQYFNHHPY PHNHYMPDLH BACU014352/1-254 GARFNSSQFM GPPVASQGGS LPASMQLQKL NNQYFNHHPY PHNHYMPDLH 151 200 ENSBTAP00000014907/1-273 PAAGHQMNGT NQHFRDCNPK HSGGSSTPGG SGGSSTPGGS AGTSGGGAGS ENSP00000356623/1-270 PAAGHQMNGT NQHFRDCNPK HSGGSSTPGG SGGSSTPGGS GSSSGGGAGS bmy_01784T0/1-307 PAAGHQMNGT NQHFRDCNPK HSGGSSTPGG SGGSSTPGGS AGTSGGGAGS ENSTTRP00000012933/1-272 PAAGHQMNGT NQHFRDCNPK HSGGSSTPGS SGGSSTPGGS AGTSGGGAGS BACU014352/1-254 PAAGHQMNGT NQHFRDCNPK HSGGSSTP-- ---------- ---------- 201 250 ENSBTAP00000014907/1-273 SNSGGGSGGG SSSNMPASVA HVPAAVLPPN VIDTDFIDEE VLMSLVIEMG ENSP00000356623/1-270 SNSG---GGS GSGNMPASVA HVPAAMLPPN VIDTDFIDEE VLMSLVIEMG bmy_01784T0/1-307 SNSGGGSGGS GSSNMPASVA HVPAAMLPPN VIDTDFIDEE VLMSLVIEMG ENSTTRP00000012933/1-272 SNSGGGSGGS GSSNMPASVA HVPAAMLPPN VIDTDFIDEE VLMSLVIEMG BACU014352/1-254 -------GGS GGSNMPASVA HVPAAMLPPN VIDTDFIDEE VLMSLVIEMG 251 300 ENSBTAP00000014907/1-273 LDRIKELPEL WLGQNEFDFM TDFVCKQQPS R--------- ---------- ENSP00000356623/1-270 LDRIKELPEL WLGQNEFDFM TDFVCKQQPS R--------- ---------- bmy_01784T0/1-307 LDRIKELPEL WLGQNEFDFM TDFVCKQQPS RPVQFNVFRR PFALTLNVGG ENSTTRP00000012933/1-272 LDRIKELPEL WLGQNEFDFM TDFVCKQQPS R--------- ---------- BACU014352/1-254 LDRIKELPEL WLGQNEFDFM TDFVCKQQPS R--------- ---------- 301 350 ENSBTAP00000014907/1-273 -----VSC ENSP00000356623/1-270 -----VSC bmy_01784T0/1-307 LDYSQTAV ENSTTRP00000012933/1-272 -----VSC BACU014352/1-254 -----VSC