KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:05 2014 Check: 00 .. Name: bmy_12901T0/1-733 Len: 1268 Check: 3101 Weight: 1.00 Name: BACU000714/1-1260 Len: 1268 Check: 9380 Weight: 1.00 Name: ENSP00000419412/1-1241 Len: 1268 Check: 1561 Weight: 1.00 Name: ENSBTAP00000014910/1-1242 Len: 1268 Check: 5433 Weight: 1.00 Name: ENSTTRP00000000804/1-1182 Len: 1268 Check: 8256 Weight: 1.00 // 1 50 bmy_12901T0/1-733 ---MSSAPRR PASGADSFRT PEPESLGPVT -PGF-PEQEE DELHRTLGVE BACU000714/1-1260 ---MSSAPRH PASGADSFRT PEPESLGPVT -PGFPEQEEE DELHRTLGVE ENSP00000419412/1-1241 ---MSSAPRR PAKGADSFCT PEPESLGPGT -PGF-PEQEE DELHRTLGVE ENSBTAP00000014910/1-1242 DLAMSSGPRR PASGADSFRT PEPESLGPVT APGFAAEQEE DELHRTLGVE ENSTTRP00000000804/1-1182 ---MSSAPRR PASGADSFRA PEPESLGPVT -PGF-PEQDE DELHRTLGVE 51 100 bmy_12901T0/1-733 RFEEILLEAG SRGGEEPGRS YGEADFEYHR QSSHHIHHPL STHLPPDARR BACU000714/1-1260 RFEEILQEAG SRGGEEPGRS YGEADFEYHR QSSHHIHHPL STHLPPDARR ENSP00000419412/1-1241 RFEEILQEAG SRGGEEPGRS YGEEDFEYHR QSSHHIHHPL STHLPPDARR ENSBTAP00000014910/1-1242 RFEEILQEAG SRGGEELGRS YGEEDFEYHR QSSHHIHHPL STHLPPDTRR ENSTTRP00000000804/1-1182 RFEEILQEAG SRGGEEPGRS YGEADFEYHR QSSHHIHHPL STHLPPDARR 101 150 bmy_12901T0/1-733 RKVPQGPGRK PRRRPGTSPT GETPTIEEGE EEEDEASEAE GARALTQPSP BACU000714/1-1260 RKVPQGPGRK PRRRPGTSPT GETPTIEEGE EEEDEASEAE GARALTQLSP ENSP00000419412/1-1241 RKTPQGPGRK PRRRPGASPT GETPTIEEGE EDEDEASEAE GARALTQPSP ENSBTAP00000014910/1-1242 RKTPQGPGRK PRRRPGASPT GETPTIEEGE EEEDEASEAE GARALSQPSP ENSTTRP00000000804/1-1182 RKVPQGSGRK PRRRPAASPT GETPTIEEGE EEEDEASEAE GARALSQP-P 151 200 bmy_12901T0/1-733 ASTPSSVQFF LQEDEGADRK AEATSPSPPP MLPHHEAAPR ATKGAQTGAL BACU000714/1-1260 ASTPSSVQFF LQEDEGADRK AETTSPSPPP MLPHHEAAPR ATKGAQTGAL ENSP00000419412/1-1241 VSTPSSVQFF LQEDDSADRK AERTSPSSPA PLPHQEATPR ASKGAQAGTQ ENSBTAP00000014910/1-1242 ASTPSSVQFF LQEDEGADRK AETTSPSPPP PLPHQEAAPR ATKAAQTGAQ ENSTTRP00000000804/1-1182 ASTPSSVQFF LQED-SADRK AETTSPS-PP LLPHHEAAPQ A--GAQTGAL 201 250 bmy_12901T0/1-733 VE----EVAA VASVTAGGDD GGASGRPPAK AQPGHRSYNL QERRRIGSMT BACU000714/1-1260 VE----EVAA VASVTAGGDD GGASGRPPAK AQPGHRSYNL QERRRIGSMT ENSP00000419412/1-1241 VEEAEAEAVA VASGTAGGDD GGASGRPLPK AQPGHRSYNL QERRRIGSMT ENSBTAP00000014910/1-1242 VE----EVVA VASGTAGGDD GGASGRLLTK AQPGHRSYNL QERRRIGSMT ENSTTRP00000000804/1-1182 VE----EVAA VASVTAGGDD GGASGRPLAK VQPGHRSYNL QERRRIGSMT 251 300 bmy_12901T0/1-733 GAEQALLPRV PTDESEAQTL ATADLDLMKS HR-------- -----FEDVP BACU000714/1-1260 GAEQALLPRV PTDESEAQTL ATADLDLMKS RLLFHARLLA AGSEVFEDRL ENSP00000419412/1-1241 GAEQALLPRV PTDEIEAQTL ATADLDLMKS HR-------- -----FEDVP ENSBTAP00000014910/1-1242 GAEQALLPRV PTDESEAQTL ATADLDLMKS HR-------- -----FEDVP ENSTTRP00000000804/1-1182 GAEQALLPRV PTDESEAQTL ATADLDLMKS HR-------- -----FEDVP 301 350 bmy_12901T0/1-733 GVRR-----H LVRKNAKASV QSGREGREPG PTPRARP--R APHKPHEVFV BACU000714/1-1260 GQRQLCGAAR FIFQNPVTSV LIQPSHNLLH ACALCPPSCH ALSSHPKVFV ENSP00000419412/1-1241 GVRR-----H LVRKNAKGST QSGREGREPG PTPRARP--R APHKPHEVFV ENSBTAP00000014910/1-1242 GVRR-----H LVRKNAKASV QSGREGREPG PTPRARP--R APHKPHEVFV ENSTTRP00000000804/1-1182 GVRR-----H LVRKNAKASV QSGREGREPG PTPRARP--R APHKPHEVFV 351 400 bmy_12901T0/1-733 ELNELLLDKN QEPQWRETAR WIKFEEDVEE ETERWGKPHV ASLSFRSLLE BACU000714/1-1260 ELNELLLDKN QEPQWRETAR WIKFEEDVEE ETERWGKPHV ASLSFRSLLE ENSP00000419412/1-1241 ELNELLLDKN QEPQWRETAR WIKFEEDVEE ETERWGKPHV ASLSFRSLLE ENSBTAP00000014910/1-1242 ELNELLLDKN QEPQWRETAR WIKFEEDVEE ETERWGKPHV ASLSFRSLLE ENSTTRP00000000804/1-1182 ELNELLLDKN QEPQWRETAR WIKFEEDVEE ETERWGKPHV ASLSFRSLLE 401 450 bmy_12901T0/1-733 LRRTLAHGAV LLDLDQQTLP GVAHQVVEQM VISDQIKAED RANVLRALLL BACU000714/1-1260 LRRTLAHGAV LLDLDQQTLP GVAHQVVEQM VISDQIKAED RANVLRALLL ENSP00000419412/1-1241 LRRTLAHGAV LLDLDQQTLP GVAHQVVEQM VISDQIKAED RANVLRALLL ENSBTAP00000014910/1-1242 LRRTLAHGAV LLDLDQQTLP GVAHQVVEQM VISDQIKAED RANVLRALLL ENSTTRP00000000804/1-1182 LRRTLAHGAV LLDLDQQTLP GVAHQVVEQM VISDQIKAED RANVLRALLL 451 500 bmy_12901T0/1-733 KHSHPSDEKD FSFPRNISAG SLGSLLGHHH GQGAESDPHV TEPLIGGVPE BACU000714/1-1260 KHSHPSDEKD FSFPRNISAG SLGSLLGHHH GQGAESDPHV TEPLIGGVPE ENSP00000419412/1-1241 KHSHPSDEKD FSFPRNISAG SLGSLLGHHH GQGAESDPHV TEPLMGGVPE ENSBTAP00000014910/1-1242 KHSHPSDEKD FSFPRNISAG SLGSLLGHHH GQGAESDPHV TEPLIGGVPE ENSTTRP00000000804/1-1182 KHSHPSDEKD FSFPRNISAG SLGSLLGHHH GQGAESDPHV TEPLIGGVPE 501 550 bmy_12901T0/1-733 TRLEVERERE LPPPAPPAGI TRSKSKHELK LLEKIPENAE ATVVLVGCVE BACU000714/1-1260 TRLEVERERE LPPPAPPAGI TRSKSKHELK LLEKIPENSE ATVVLVGCVE ENSP00000419412/1-1241 TRLEVERERE LPPPAPPAGI TRSKSKHELK LLEKIPENAE ATVVLVGCVE ENSBTAP00000014910/1-1242 TRLEVERERE PPPPAPPAGI TRSKSKHELK LLEKIPENAE ATVVLVGCVE ENSTTRP00000000804/1-1182 TRLEVERERE LPPAAPPAGI TRSKSKHELK LLEKIPENAE ATVVLVGCVE 551 600 bmy_12901T0/1-733 FLSRPTMAFV RLREAAELDA VLEVPVPVRF LFLLLGPSSA NMDYHEIGRS BACU000714/1-1260 FLSRPTMAFV RLREAAELDA VLEVPVPVRF LFLLLGPSSA NMDYHEIGRS ENSP00000419412/1-1241 FLSRPTMAFV RLREAVELDA VLEVPVPVRF LFLLLGPSSA NMDYHEIGRS ENSBTAP00000014910/1-1242 FLARPTMAFV RLREAVELDA VLEVPVPVRF LFLLLGPSSA NMDYHEIGRS ENSTTRP00000000804/1-1182 FLSRPTMAFV RLREAAELDA VLEVPVPVRF LFLLLGPSSA NMDYHEIGRS 601 650 bmy_12901T0/1-733 ISTLMSDKQF HEAAYLADER EDLLTAINAF LDCSVVLPPS EVQGEELLRS BACU000714/1-1260 ISTLMSDKQF HEAAYLADER EDLLTAINAF LDCSVVLPPS EVQGEELLRS ENSP00000419412/1-1241 ISTLMSDKQF HEAAYLADER EDLLTAINAF LDCSVVLPPS EVQGEELLRS ENSBTAP00000014910/1-1242 ISTLMSDKQF HEAAYLADER EDLLTAINAF LDCSVVLPPS EVQGEELLRS ENSTTRP00000000804/1-1182 ISTLMSDKQF HEAAYLADER EDLLTAINAF LDCSVVLPPS EVQGEELLRS 651 700 bmy_12901T0/1-733 VAHFQRQMLK KREEQGRLLP PGAGLEPKSA QDKD------ -GGPGCSAPA BACU000714/1-1260 VAHFQRQMLK KREEQGRLLP PGAGLEPKSA QDKALLQMVE AAGAVEDDPL ENSP00000419412/1-1241 VAHFQRQMLK KREEQGRLLP TGAGLEPKSA QDKALLQMVE AAGAAEDDPL ENSBTAP00000014910/1-1242 VAHFQRQMLK KREEQGRLLP PGAGLEPKSA QDKALLQMVE VAGAVEDDPL ENSTTRP00000000804/1-1182 VAHFQRQMLK KREEQVRLLP PGAGLEPKSA QDKALLQMVE VAGVVEDDPL 701 750 bmy_12901T0/1-733 DGRGGRCGG- -----RRSPS ADRPAFWGLD PRC------- ---------- BACU000714/1-1260 RRTGRPFGGL IRDVRRRYPH YLSDFRDALD PQCLAAVIFI YFAALSPAIT ENSP00000419412/1-1241 RRTGRPFGGL IRDVRRRYPH YLSDFRDALD PQCLAAVIFI YFAALSPAIT ENSBTAP00000014910/1-1242 RRTGRPFGGL IRDVRRRYPH YLSDFRDALD PQCLAAVIFI YFAALSPAIT ENSTTRP00000000804/1-1182 RRTGRPFGGL IRDVRRRYPH YLSDFRDALN PQCLAAVIFI YFAALSPAIT 751 800 bmy_12901T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU000714/1-1260 FGGLLGEKTH DLIGVSELIM STAIQGVIFC LLGAQPLLVI GFSGPLLVFE ENSP00000419412/1-1241 FGGLLGEKTQ DLIGVSELIM STALQGVVFC LLGAQPLLVI GFSGPLLVFE ENSBTAP00000014910/1-1242 FGGLLGEKTH DLIGVSELIM STAIQGVLFC LLGAQPLLVI GFSGPLLVFE ENSTTRP00000000804/1-1182 FGGLLGEKTH DLIGVSELIM STAVQGVIFC LLGAQPLLVI GFSGPLLVFE 801 850 bmy_12901T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU000714/1-1260 EAFFSFCSSN NLEYLVGRVW IGFWLVLLAL LMVALEGSFL VRFVSRFTQE ENSP00000419412/1-1241 EAFFSFCSSN HLEYLVGRVW IGFWLVFLAL LMVALEGSFL VRFVSRFTQE ENSBTAP00000014910/1-1242 EAFFSFCSSN NLEYLVGRVW IGLWLVLLAL LMVALEGSFL VRFVSRFTQE ENSTTRP00000000804/1-1182 EAFFSFCSSN DLEYLVGRVW IGFWLVLLAL LMVALEGSFL VRFVSRFTQE 851 900 bmy_12901T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU000714/1-1260 IFAFLISLIF IYETFYKLVK IFQEHPLHGC SVSNSSEADS SENATWAGAG ENSP00000419412/1-1241 IFAFLISLIF IYETFYKLVK IFQEHPLHGC SASNSSEVDG GENMTWAGA- ENSBTAP00000014910/1-1242 IFAFLISLIF IYETFYKLVK IFQEHPLHGC SVSNSSEAGS GENATWPGA- ENSTTRP00000000804/1-1182 IFAFLISLIF IYETFYKLVK IFQEHPLHGC SVSNSSEADS SENATWAGAA 901 950 bmy_12901T0/1-733 -AAPLSPL-- ---------- ---------- ---------- ---------- BACU000714/1-1260 AGATLGPRNE SSAGPSRQGR PRGQPNTALL SLVLMAGTFF IAFFLRKFKN ENSP00000419412/1-1241 -RPTLGPGNR SLAGQSGQGK PRGQPNTALL SLVLMAGTFF IAFFLRKFKN ENSBTAP00000014910/1-1242 -GATLGPRNE SSARPPGQGR PRGQPNTALL SLVLMAGTFF IAFFLRKFKN ENSTTRP00000000804/1-1182 EAATLGPRNE SSAGPSRQGR PRGQPNTALL SLVLMAGTFF IAFFLRKFKN 951 1000 bmy_12901T0/1-733 ----PERLPR ---------- ---------- ---------- ---------- BACU000714/1-1260 SRFFPGRVRR VIGDFGVPIA ILIMVLVDYS IEDTYTQKLS VPSGFSVTAP ENSP00000419412/1-1241 SRFFPGRIRR VIGDFGVPIA ILIMVLVDYS IEDTYTQKLS VPSGFSVTAP ENSBTAP00000014910/1-1242 SRFFPGRVRR VIGDFGVPIA ILVMVLVDYS IEDTYTQKLS VPSGFSVTAP ENSTTRP00000000804/1-1182 SRFFPGRVRR VIGDFGVPIA ILIMVLVDYS IEDTYTQKLS VPSGISVTAP 1001 1050 bmy_12901T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU000714/1-1260 EKRGWVINPL GEHSSFPVWM MVASLLPAIL VFILIFMETQ ITTLIISKKE ENSP00000419412/1-1241 EKRGWVINPL GEKSPFPVWM MVASLLPAIL VFILIFMETQ ITTLIISKKE ENSBTAP00000014910/1-1242 EKRGWVINPL GEKSTFPVWM MVASLLPAIL VFILIFMETQ ITTLIISKKE ENSTTRP00000000804/1-1182 EKRGWVINPL GERSSFPVWM MVASLLPAIL VFILIFMETQ ITTLIISKKE 1051 1100 bmy_12901T0/1-733 ---------- ---------- --CA------ ---------- ---------R BACU000714/1-1260 RMLQKGSGFH LDLLLIVAMG GICALFGLPW LAAATVRSVT HANALTVMSK ENSP00000419412/1-1241 RMLQKGSGFH LDLLLIVAMG GICALFGLPW LAAATVRSVT HANALTVMSK ENSBTAP00000014910/1-1242 RMLQKGSGFH LDLLLIVAMG GICALFGLPW LAAATVRSVT HANALTVMSK ENSTTRP00000000804/1-1182 RMLQKGSGFH LDLLLIVAMG GICALFGLPW LAAATVRSVT HANALTVMSK 1101 1150 bmy_12901T0/1-733 PPVPGRR--- ---------- ---------- ---------- ---------- BACU000714/1-1260 AVAPGDKPKI QEVKEQRVTG LLVALLVGLS LVIGDLLRQI PLAVLFGIFL ENSP00000419412/1-1241 AVAPGDKPKI QEVKEQRVTG LLVALLVGLS IVIGDLLRQI PLAVLFGIFL ENSBTAP00000014910/1-1242 AVAPGDKPKI QEVKEQRVTG LLVALLVGLS LVIGDLLRQI PLAVLFGIFL ENSTTRP00000000804/1-1182 AVAPGDKPKI QEVKEQRVTG LLVALLVGLS LVIGDLLRQI PLAVLFGIFL 1151 1200 bmy_12901T0/1-733 ---------- ----HLHLLR GPVSCH---- ---------- HLRGAAG--- BACU000714/1-1260 YMGVTSLNGI QFYERLHLLL MPPKHHPDVT YVKKVRTLRM HLFTALQLLC ENSP00000419412/1-1241 YMGVTSLNGI QFYERLHLLL MPPKHHPDVT YVKKVRTLRM HLFTALQLLC ENSBTAP00000014910/1-1242 YMGVTSLNGI QFYERLHLLL MPPKHHPDVT YVKKVRTLRM HLFTALQLLC ENSTTRP00000000804/1-1182 YMGVTSLNGI QFYERLHLLL MPPKHHPDVT YVKKVRTLRM HLFTALQLLC 1201 1250 bmy_12901T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU000714/1-1260 LAVLWAVMST AASLAFPFLL LLTVPLRMLV LTRIFTEREM KCLDANEAEP ENSP00000419412/1-1241 LALLWAVMST AASLAFPFIL ILTVPLRMVV LTRIFTDREM KCLDANEAEP ENSBTAP00000014910/1-1242 LAVLWAVMST AASLAFPFIL ILTVPLRMVV LTRIFTEREM KYLDANEAEP ENSTTRP00000000804/1-1182 LAVLWTVMST AASLAF---- ---------- ---------- ---------- 1251 1300 bmy_12901T0/1-733 ---------- -------- BACU000714/1-1260 VFDEREGVDE YNEMPMPV ENSP00000419412/1-1241 VFDEREGVDE YNEMPMPV ENSBTAP00000014910/1-1242 VFDEREGVDE YNEMPMPV ENSTTRP00000000804/1-1182 ---------- --------