KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:06 2014 Check: 00 .. Name: bmy_05556T0/1-494 Len: 674 Check: 707 Weight: 1.00 Name: ENSP00000385824/1-673 Len: 674 Check: 6396 Weight: 1.00 Name: ENSBTAP00000014920/1-672 Len: 674 Check: 7745 Weight: 1.00 Name: ENSTTRP00000016335/1-612 Len: 674 Check: 9302 Weight: 1.00 Name: BACU020554/1-572 Len: 674 Check: 360 Weight: 1.00 // 1 50 bmy_05556T0/1-494 ---------- ---------- ---------- ---------- ---------- ENSP00000385824/1-673 MAEAPASPAP LSPLEVELDP EFEPQSRPRS CTWPLQRPEL QASPAKPSGE ENSBTAP00000014920/1-672 MAEAPASPAP ISPLEVELDP EFEPQSRPRS CTWPLQRPEL QGSPAKPSGE ENSTTRP00000016335/1-612 ---------- ---------- ---------- ---------- ---------- BACU020554/1-572 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05556T0/1-494 ---------- ---------- ---------- ---------- ---------- ENSP00000385824/1-673 TAADSMIPEE EDDEDDEDGG GRAGSAMAIG GGGGSGTLGS GLLLEDSARV ENSBTAP00000014920/1-672 AAADSMIPEE EDDEDDEDGG GRAGSAMAIG GGGG-GPLGS GLLLEDSARL ENSTTRP00000016335/1-612 -------PEE EDDEDDEDGA -VAGSVMAIG GA---GPLGS GLLLEDSARL BACU020554/1-572 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_05556T0/1-494 ---------- ---------- ---------- ---------- ---------- ENSP00000385824/1-673 LAPGGQDPGS GPATAAGGLS GGTQALLQPQ QPLPPPQPGA AGGSGQPRKC ENSBTAP00000014920/1-672 LAPGGQDPGS GPAPAAGALS GGTQTPLQPQ QPLPPPQPGT AGGSGQPRKC ENSTTRP00000016335/1-612 LAPGGQDPGS GPAPAAGALS GGTQTPLQPQ QTLPPPQPGA AGGSGQPRKC BACU020554/1-572 -XPGGQDPGS GPAPAVGALS GGTQTPLQPQ QTLPPPQPGA AGGSGQPRKC 151 200 bmy_05556T0/1-494 ---------- ---------- ------MSLI SNCFSWVLS- ---LDHSGSS ENSP00000385824/1-673 SSRRNAWGNL SYADLITRAI ESSPDKRLTL SQIYEWMVRC VPYFKDKGDS ENSBTAP00000014920/1-672 SSRRNAWGNL SYADLITRAI ESSPDKRLTL SQIYEWMVRC VPYFKDKGDS ENSTTRP00000016335/1-612 SSRRNAWGNL SYADLITRAI ESSPDKRLTL SQIYEWMVRC VPYFKDKGDS BACU020554/1-572 SSRRNAWGNL SYADLITRAI ESSPDKRLTL SQIYEWMVRC VPYFKDKGDS 201 250 bmy_05556T0/1-494 ALSLLSLQNS IRHNLSLHSR FMRVQNEGTG KSSWWIINPD GGKSGKAPRR ENSP00000385824/1-673 NSSA-GWKNS IRHNLSLHSR FMRVQNEGTG KSSWWIINPD GGKSGKAPRR ENSBTAP00000014920/1-672 NSSA-GWKNS IRHNLSLHSR FMRVQNEGTG KSSWWIINPD GGKSGKAPRR ENSTTRP00000016335/1-612 NSSA-GWKNS IRHNLSLHSR FMRVQNEGTG KSSWWIINPD GGKSGKAPRR BACU020554/1-572 NSSA-GWKNS IRHNLSLHSR FMRVQNEGTG KSSWWIINPD GGKSGKAPRR 251 300 bmy_05556T0/1-494 RAVSMDNSNK YTKSRGRAAK KKAALQTAPE SADDSPSQLS KWPGSPTSRS ENSP00000385824/1-673 RAVSMDNSNK YTKSRGRAAK KKAALQTAPE SADDSPSQLS KWPGSPTSRS ENSBTAP00000014920/1-672 RAVSMDNSNK YTKSRGRAAK KKAALQTAPE SADDSPSQLS KWPGSPTSRS ENSTTRP00000016335/1-612 RAVSMDNSNK YTKSRGRAAK KKAALQTATE SNDDSPSQLS KWPGSPTSRS BACU020554/1-572 RAVSMDNSNK YTKSRGRAAK KKAALQTAPE SADDSPSQLS KWPGSPTSRS 301 350 bmy_05556T0/1-494 SDELDAWTDF RSRTNSNAST VSGRLSPILA STELDDVQDD DAPLSPMLYS ENSP00000385824/1-673 SDELDAWTDF RSRTNSNAST VSGRLSPIMA STELDEVQDD DAPLSPMLYS ENSBTAP00000014920/1-672 SDELDAWTDF RSRTNSNAST VSGRLSPILA STELDDVQDD DAPLSPMLYS ENSTTRP00000016335/1-612 SDELDAWTDF RSRTNSNAST VSGRLSPILA STELDDVQDD DAPLSPMLYS BACU020554/1-572 SDELDAWTDF RSRTNSNAST VSGRLSPILA STELDDVQDD DAPLSPMLYS 351 400 bmy_05556T0/1-494 SSASLSPSVS KPCTVELPRL TDMAGTMNLN DGLADNLMDD LLDNIALPAS ENSP00000385824/1-673 SSASLSPSVS KPCTVELPRL TDMAGTMNLN DGLTENLMDD LLDNITLPPS ENSBTAP00000014920/1-672 SSASLSPSVS KPCTVELPRL TDMAGTMNLN DGLADNLMDD LLDNIALPAS ENSTTRP00000016335/1-612 SSASLSPSVS KPCTVELPRL TDMAGTMNLN DGLADNLMDD LLDNIALPAS BACU020554/1-572 SSASLSPSVS KPCTVELPRL TDMAGTMNLN DGLADNLMDD LLDNIALPAS 401 450 bmy_05556T0/1-494 QRSPPGGLMQ RSSSFPYTTK GSGLGSPTSS FSSTVFGPSS LNSLRQSPMQ ENSP00000385824/1-673 QPSPTGGLMQ RSSSFPYTTK GSGLGSPTSS FNSTVFGPSS LNSLRQSPMQ ENSBTAP00000014920/1-672 QPSPPGGLMQ RSSSFPYTTK GSGLGSPTSS FSSAVFGPSS LNSLRQSPMQ ENSTTRP00000016335/1-612 QPSPPGGLMQ RSSSFPYTTK GSGLGSPTSS FSSTVFGPSS LNSLRQSPMQ BACU020554/1-572 QPSPPGGLMQ RSSSFPYTTK GSGLGSPTSS FSSTVFGPSS LNSLRQSPMQ 451 500 bmy_05556T0/1-494 TIQENKPATF SSMSHYGNQT LQDLLTSDSL SHSDVMMTQS DPLMSQASTA ENSP00000385824/1-673 TIQENKPATF SSMSHYGNQT LQDLLTSDSL SHSDVMMTQS DPLMSQASTA ENSBTAP00000014920/1-672 TIQENKPATF SSMSHYGNQT LQDLLTSDSL SHSDVMMTQS DPLMSQASTA ENSTTRP00000016335/1-612 TIQENKPATF SSMSHYGNQT LQDLLTSDSL SHSDVMMTQS DPLMSQASTA BACU020554/1-572 TIQENKPATF SSMSHYGNQT LQDLLTSDSL SHSDVMMTQS DPLMSQASTA 501 550 bmy_05556T0/1-494 VSAQNSRRNV MLRSDPMMSF AAQPNQGSLV NQNLLHHQHQ TQGALGGSRA ENSP00000385824/1-673 VSAQNSRRNV MLRNDPMMSF AAQPNQGSLV NQNLLHHQHQ TQGALGGSRA ENSBTAP00000014920/1-672 VSAQNSRRNV MLRSDPMMSF AAQPNQGSLV NQNLLHHQHQ TQGALGGSRA ENSTTRP00000016335/1-612 VSAQNSRRSV MLRSDPMMSF AAQPNQGSLV NQNLLHHQHQ TQGALGGSRA BACU020554/1-572 VSAQNSRRNV MLRSDPMMSF AAQPNQGSLV NQNLLHHQHQ TQGALGGSRA 551 600 bmy_05556T0/1-494 LSSSVSNMGL SDSSSLGSAK HQQQSPVSQS MQTLSDSLSG SSLYSTSAHL ENSP00000385824/1-673 LSNSVSNMGL SESSSLGSAK HQQQSPVSQS MQTLSDSLSG SSLYSTSANL ENSBTAP00000014920/1-672 LSNSVSNMGL SDSSSLGSAK HQQQSPVSQS MQTLSDSVSG SSLYSTSANL ENSTTRP00000016335/1-612 LSSSVSNMGL SDSSSLGSAK HQQQSPVSQS MQTLSDSLSG SSLYSASAHL BACU020554/1-572 LSSSVSNMGL SDSSSLGSAK HQQQSPVSQS MQTLSDSLSG SSLYSTSAHL 601 650 bmy_05556T0/1-494 PVMGHEKFPS DLDLDMFNGS LECDMESIIR SELMDADGLD FNFDSLISTQ ENSP00000385824/1-673 PVMGHEKFPS DLDLDMFNGS LECDMESIIR SELMDADGLD FNFDSLISTQ ENSBTAP00000014920/1-672 PVMGHEKFPS DLDLDMFNGS LECDMESIIR SELMDADGLD FNFDSLISTQ ENSTTRP00000016335/1-612 PVMGHEKFPS DLDLDMFNGS LECDMESIIR SELMDADGLD FNFDSLISTQ BACU020554/1-572 PVMGHEKFPS DLDLDMFNGS LECDMESIIR SELMDADGLD FNFDSLISTQ 651 700 bmy_05556T0/1-494 NVVGLNVGSF TGAKQASSQS WVPG ENSP00000385824/1-673 NVVGLNVGNF TGAKQASSQS WVPG ENSBTAP00000014920/1-672 NVVGLNVGSF TGAKQASSQS WVPG ENSTTRP00000016335/1-612 NVVGLNVGSF TGAKQASSQS WVPG BACU020554/1-572 NVVGLNVGSF TGAKQASSQS WVPG