KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:07 2014 Check: 00 .. Name: ENSBTAP00000014928/1-526 Len: 582 Check: 8640 Weight: 1.00 Name: ENSP00000361170/1-546 Len: 582 Check: 1211 Weight: 1.00 Name: bmy_07233T0/1-432 Len: 582 Check: 7996 Weight: 1.00 Name: BACU000324/1-514 Len: 582 Check: 7516 Weight: 1.00 Name: ENSTTRP00000008339/1-548 Len: 582 Check: 7027 Weight: 1.00 // 1 50 ENSBTAP00000014928/1-526 ---------- ----MKKSRA AVGNRSGRRK QASSQEGKEK CAFGSSQAKP ENSP00000361170/1-546 MTPLVSRLSR LWAIMRKPRA AVG--SGHRK QAASQEGRQK HAKNNSQAKP bmy_07233T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU000324/1-514 ---------- ----MRKPRA AVGSRSRCRK QASSQEGREK RALSSSQAKP ENSTTRP00000008339/1-548 -MTPVPRLYS QCSIMRKPRA AVGSRSRCRK QASSQEGREK RALSSSQAKP 51 100 ENSBTAP00000014928/1-526 SAPS------ ----AGPARQ QKAL-LQASV SPYHLFRDVA EVTALQESLL ENSP00000361170/1-546 SACDGMIAEC PGAPAGLARQ PEEVVLQASV SSYHLFRDVA EVTAFRGSLL bmy_07233T0/1-432 ---------- ---------- ---------- ---------- ---------- BACU000324/1-514 SAPD------ -----GLARQ QEEVRLQAPV SPYHLFRDTA EVTVFRKSLL ENSTTRP00000008339/1-548 SAPDGTIPEF SEAPAGLARQ QEEVRLQAPV SPYHLFRDTA EVTVFRKSLL 101 150 ENSBTAP00000014928/1-526 DWYDRKKRDL PWRRLVEDEV DLDRRAYAVC FTDVMLQQTQ VATVINYYTR ENSP00000361170/1-546 SWYDQEKRDL PWRRRAEDEM DLDRRAYAVW VSEVMLQQTQ VATVINYYTG bmy_07233T0/1-432 ---------- ---------- ---------- ----MLQQTQ VATVIDYYTR BACU000324/1-514 SWYDREKRDL PWRKRVEGEV DLDRRAYAVW VSEVMLQQTQ VATVINYYTR ENSTTRP00000008339/1-548 SWYDREKRDL PWRRRVEGEV DLDRRAYAVW VSEVMLQQTQ VATVIDYYNR 151 200 ENSBTAP00000014928/1-526 WMQKWPTLQD LASASLEEVN QLWAGLGYYS RGRWLQEGAR KVVEELGGHM ENSP00000361170/1-546 WMQKWPTLQD LASASLEEVN QLWAGLGYYS RGRRLQEGAR KVVEELGGHM bmy_07233T0/1-432 WMQ------- -------EVN QLWAGLGYYS RGRRLQEGAR KVVEELGGHM BACU000324/1-514 WMQKWPTLQD LASASLEEVN QLWAGLGYYS RGRRLQEGAR KVVEELGGHM ENSTTRP00000008339/1-548 WMQKWPTLQD LASASLEEVN QLWAGLGYYS RGRRLQEGAR KVVEELGGHM 201 250 ENSBTAP00000014928/1-526 PRTAETLQQF LPGVGRYTAG AIASIAFGQA AGVVDGNVIR VLCRVRAIGA ENSP00000361170/1-546 PRTAETLQQL LPGVGRYTAG AIASIAFGQA TGVVDGNVAR VLCRVRAIGA bmy_07233T0/1-432 PRTAETLQRL LPGVGRYTAG AIASIAFGQA TGVVDGNVVR VLCRVRAIGA BACU000324/1-514 PRTAETLQRL LPGVGRYTAG AIASIAFGQA TGVVDGNVVR VLCRVRAIGA ENSTTRP00000008339/1-548 PRTAETLQWL LPGVGRYTAR AIASIAFGQA TGVVDGNVVR VLCRVRAIGA 251 300 ENSBTAP00000014928/1-526 DSSSTLVSQH LWSLAQQLVD PARPGDFNQA AMELGAIVCT PKRPLCSHCP ENSP00000361170/1-546 DPSSTLVSQQ LWGLAQQLVD PARPGDFNQA AMELGATVCT PQRPLCSQCP bmy_07233T0/1-432 DPSSTLVSQQ LWSLAQQLVE PARPGDFNQA AMELGATVCT PQRPLCSQCP BACU000324/1-514 DPSSTLVSQQ LWSLAQQLVE PARPGDFNQA AMELGATVCT PQRPLCSQCP ENSTTRP00000008339/1-548 DPSSTLVSQQ LWSLAQQLVE PARPGDFNQA AMELGATVCT PQRPLCSQCP 301 350 ENSBTAP00000014928/1-526 VQNLCRARQR VEREQLSASQ SLPGNCDVEE CAPNTGQCPL CAPPTEPWDQ ENSP00000361170/1-546 VESLCRARQR VEQEQLLASG SLSGSPDVEE CAPNTGQCHL CLPPSEPWDQ bmy_07233T0/1-432 VQSLCRAHQR VEREQLSASR SLPGSRDVEE CAPNTGQCQL CAPPTEPWDQ BACU000324/1-514 VQSLCRARQR VEREQLSASR SLPGSRDVEE CAPNTGQCQL CGPPTEPWDQ ENSTTRP00000008339/1-548 VQSLCRAHQR VEREQLSASR SPPGSRDVEE CAPNTGQCQL CAPPTEPWDQ 351 400 ENSBTAP00000014928/1-526 TLGVTNFPRK ASRKPPREEC SAICVLEQPK ALGGAHILLV QRPNSGLLAG ENSP00000361170/1-546 TLGVVNFPRK ASRKPPREES SATCVLEQPG AL-GAQILLV QRPNSGLLAG bmy_07233T0/1-432 TLGVANFPRK VSRRPPREEC SATCVLEQPR ALGGARILLV QRPNSGLLAG BACU000324/1-514 TLGVANFPRK VSRRPPREEC SATCVLEQPR ALGGARILLV QRPNSGLLAG ENSTTRP00000008339/1-548 TLGVANFPRK VSRRPPREEC SATCVLEQPR ALGGARILLV QRPNSGLLAG 401 450 ENSBTAP00000014928/1-526 LWEFPSVSVN AEASGQHQRA ALLQELQSWV GPLPDTRLQH LG-------- ENSP00000361170/1-546 LWEFPSVT-- WEPSEQLQRK ALLQELQRWA GPLPATHLRH LG-------- bmy_07233T0/1-432 LWEFPSVT-- AEPSGQHQRK ALLRELQSWV GPLPATRLRH LGQVTSWRSP BACU000324/1-514 LWEFPSVT-- AEPSGQHQRK ALLQELQSWV GPLPATRLRH LG-------- ENSTTRP00000008339/1-548 LWEFPSVT-- AEPSGQHQRK ALLQKLQSWV GPVPATRLRH LG-------- 451 500 ENSBTAP00000014928/1-526 QVVHTFSHIK MTYQVYSLAL EEHTPVTIVP PGARWLTRED FHTAAVSTAM ENSP00000361170/1-546 EVVHTFSHIK LTYQVYGLAL EGQTPVTTVP PGARWLTQEE FHTAAVSTAM bmy_07233T0/1-432 QVVHTFSHIK LTYQVYGLAL EEQTPVTIVP PGARWLTREE FHTAAVSTAM BACU000324/1-514 QVVHTFSHIK LTYQVYGLAL EEQTPVTIVP PGARWLTREE FHTAAVSTAM ENSTTRP00000008339/1-548 QVVHTFSHIK LTYQVYGLAL EEQTPVAIVP PGARWLTREE FHTAAVSTAM 501 550 ENSBTAP00000014928/1-526 KKVFRMY--- ---------- ---------- EGQQPGTCKG SKRSQVATLS ENSP00000361170/1-546 KKVFRVY--- ---------- ---------- QGQQPGTCMG SKRSQVSSPC bmy_07233T0/1-432 KKALPLLSSL YFLCFLHVLS ELVTMCSACT RANSQGPARV PKDPRCPPCP BACU000324/1-514 KKVFRVY--- ---------- ---------- EGQQPGTCKG SKRSQVSTLS ENSTTRP00000008339/1-548 KKVFRVY--- ---------- ---------- EGQQPGTCKG SKRSQVSTLS 551 600 ENSBTAP00000014928/1-526 KRKKPSPGQQ VLESFFWPHV PTDAPSLNTA AQ ENSP00000361170/1-546 SRKKPRMGQQ VLDNFFRSHI STDAHSLNSA AQ bmy_07233T0/1-432 DGKSPAQASK SWIVSFGPTS PADAPSLNSA TQ BACU000324/1-514 RRKKPSAGQQ VLDSFFRPHI PC-------- -- ENSTTRP00000008339/1-548 RWKKPSAGQQ VLDSFFRPHI PADAPSLNSA TQ