KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:08 2014 Check: 00 .. Name: ENSP00000328694/1-268 Len: 271 Check: 4731 Weight: 1.00 Name: BACU003610/1-150 Len: 271 Check: 9284 Weight: 1.00 Name: bmy_05012T0/1-197 Len: 271 Check: 5209 Weight: 1.00 Name: ENSBTAP00000014936/1-229 Len: 271 Check: 9250 Weight: 1.00 Name: ENSTTRP00000000851/1-232 Len: 271 Check: 1162 Weight: 1.00 // 1 50 ENSP00000328694/1-268 MLGDHCSLPE DQARPGQSLQ SGLCCKMVLQ AVSKVLRKSK AKPNGKKPAA BACU003610/1-150 ---------- ---------- ---------- ALPSLRRKSK AKPNGKKPVA bmy_05012T0/1-197 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014936/1-229 ---------- ---------- ---------- -MDWLMGKSK AKPNGKKPAA ENSTTRP00000000851/1-232 ---------- ---------- ---------- ----RPRKSK AKPNGKKPVA 51 100 ENSP00000328694/1-268 EERKAYLEPE HTKARITDFQ FKELVVLPRE IDLNEWLASN TTTFFHHINL BACU003610/1-150 EEKKVYLEPE YTKSRITDFG FKELVVLPRE IDLNEWLASN TTTFFHHVNL bmy_05012T0/1-197 ---------- --MAPRCGFH ARPFSSLP-- ---------- ATTFFHHVNL ENSBTAP00000014936/1-229 EEKKVYLEPE YAKSRITDFG FKELVVLPRE IDLNEWLASN TTTFFHHVNL ENSTTRP00000000851/1-232 EEKKVYLEPE YTKSRITDFG FKELVVLPRE IDLNEWLASN TTTFFHHVNL 101 150 ENSP00000328694/1-268 QYSTISEFCT GETCQTMAVC NTQYYWYDER GKKVKCTAPQ YVDFVMSSVQ BACU003610/1-150 QYSTISEFCT GEACQTMAVC NTQYYWYDER GKKVKCTAPQ YVDFVMSSVQ bmy_05012T0/1-197 QYSTISEFCT GEACQTMAVC NTQYYWYDER GKKVKCTAPQ YVDFVMSSVQ ENSBTAP00000014936/1-229 QYSTISEFCT GEACQTMAVC NTQYYWYDER GKKVKCTAPQ YVDFVMSSVQ ENSTTRP00000000851/1-232 QYSTISEFCT REACQTMAVC NTQYYWYDER GKKVKCTAPQ YVDFVMSSVQ 151 200 ENSP00000328694/1-268 KLVTDEDVFP TKYGREFPSS FESLVRKICR HLFHVLAHIY WAHFKETLAL BACU003610/1-150 KLVTDEDVFP TKYG------ ---------- ---------- -------LAV bmy_05012T0/1-197 KLVTDEDVFP TKYGREFPSS FESLVKKICK YLFHVLAHIY SSHFKETLAL ENSBTAP00000014936/1-229 KLVTDEDVFP TKYGREFPSS FEALVKKICK YLFHVLAHIY SAHFKETLAL ENSTTRP00000000851/1-232 KLVTDEDVFP TKYGREFPSS FESLVKKICK YLFHVLAHIY SSHFKETLAL 201 250 ENSP00000328694/1-268 ELHGHLNTLY VHFILFAREF NLLDPKETAI MDDLTEVLC- -SGAGGVHSG BACU003610/1-150 N--------- ---------- ---------- ---------- ---------- bmy_05012T0/1-197 ELHGHLNTLY VHFILFAREF NLLDPKETAV MDDLTEVLCG GGGGGGGGGG ENSBTAP00000014936/1-229 ELHGHLNTLY AHFILFAREF NLLDPKETAV MDDLTEALC- ----GG---- ENSTTRP00000000851/1-232 ELHGHLNTLY VHFILFAREF NLLDPKETAV MDDLTEVLC- ----GSGGGG 251 300 ENSP00000328694/1-268 GSGDGAGSGG P-GAQNHVKE R BACU003610/1-150 -----PGPTG HMGPSSS--- - bmy_05012T0/1-197 GRGGGDGAGG AAGAQNHVKE R ENSBTAP00000014936/1-229 --GGGDVPCW AAGAQNHVKE R ENSTTRP00000000851/1-232 GRGGGDGAGG AAGAQNHVKE R