KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:09 2014 Check: 00 .. Name: ENSP00000351052/1-502 Len: 522 Check: 1088 Weight: 1.00 Name: ENSBTAP00000014941/1-502 Len: 522 Check: 1975 Weight: 1.00 Name: ENSTTRP00000008018/1-479 Len: 522 Check: 9682 Weight: 1.00 Name: bmy_08072T0/1-477 Len: 522 Check: 9624 Weight: 1.00 Name: BACU006803/1-522 Len: 522 Check: 2772 Weight: 1.00 // 1 50 ENSP00000351052/1-502 MAAPCEGQAF AVGVEKNWGA VVRSPEGTPQ KIRQLIDEGI APEEGGVDAK ENSBTAP00000014941/1-502 MAAPSEGTSF TAGVEKNWSA VVRSPEGTPQ KVRQLIDEGI APEEGGAEAK ENSTTRP00000008018/1-479 ---------- ---------- ---SPEETPQ KVRQLIDEGI APEEGGAEVK bmy_08072T0/1-477 MAAPSEGLAF AAGVEKNCSA VVRSPEGTPQ KVRQLIDEGI APEEGGAEAK BACU006803/1-522 MAAPSEGLTF AAGVEKNCSA VVRSPEGTPQ KVRQLIDEGI APEEGGAEAK 51 100 ENSP00000351052/1-502 DTSATSQSVN GSPQAEQPSL ESTSKEAFFS RVETF--SSL KWAGKPFELS ENSBTAP00000014941/1-502 DTSATFQSVN GSPQAEEPPL ESTSKEAFFS RVETY--SSL KWAGKPSELS ENSTTRP00000008018/1-479 DTSATLQSVN GSPRAEEPPL ESRSKEAFFS RVETF--SSL KWAGKPPELS bmy_08072T0/1-477 DTSATFQSVN GSPRAEEPPL ESTSKEAFFS RVETFSISFL VRVSKPPELS BACU006803/1-522 DTSATFQSVN GSPRAEEPPL ESTSKEAFFS RVETFSISFL VRVSKPPELS 101 150 ENSP00000351052/1-502 PLVCAKYGWV TVECDMLKCS SCQAFLCASL QPAFDFDRYK QRCAELKKAL ENSBTAP00000014941/1-502 PLVCAKYGWV TVECDMLKCS SCQAFLCATL QPAFDFDRYK ERCAELKKAL ENSTTRP00000008018/1-479 PLVCAKYGWV TVECDMLKCS SCQAFLCATL QPAFDFDRYK ERCAELKKAL bmy_08072T0/1-477 PLVCAKYGWV TVECDMLKCS SCQAFLCATL QPAFDFDRY- ---------- BACU006803/1-522 PLVCAKYGWV TVECDMLKCS SCQAFLCATL QPAFDFDRYK ERCAELKKAL 151 200 ENSP00000351052/1-502 CTAHEKFCFW PDSPSPDRFG MLPLDEPAIL VSEFLDRFQS LCHLDLQLPS ENSBTAP00000014941/1-502 CTAHEKFCFW PDSPSPDRFG MLPLDEPTVL VSEFLDRFQS LCHLDLQLPS ENSTTRP00000008018/1-479 CTAHEKFCFW PDSPSPDRFG MLPLDEPAVL VS-FLDRFQS LCHLDFQLPS bmy_08072T0/1-477 ---------- -------RFG MLPLDEPAVL VSEFVDRFQS LCHLDFQLPS BACU006803/1-522 CTAHEKFCFW PDSPSPDRFG MLPLDEPAVL VSEFVDRFQS LCHLDFQLPS 201 250 ENSP00000351052/1-502 LRPEDLKTMC LTEDKISLLL HLLEDELDHR TDERKTTIKL GSD-IQVHVT ENSBTAP00000014941/1-502 LRPEDLKTMC LTEDKISLLL HLLEDELDHR TDERKTATKL GSD-IQVHVT ENSTTRP00000008018/1-479 LRPEDLKTMC LTEDKISLLL NLLEDELDHG TDERKTATKL GSDIIQIHVT bmy_08072T0/1-477 LRPEDLKTMC LTEDKISLLL NLLEDELDHR TDERKTATKL GSDIIQIHVT BACU006803/1-522 LRPEDLKTMC LTEDKISLLL NLLEDELDHR TDERKTATKL GSDIIQIHVT 251 300 ENSP00000351052/1-502 ACILSVCGWA CSSSLESMQL SLITCSQCMR KVGLWGFQQI ESSMTDLDAS ENSBTAP00000014941/1-502 ACILSVCGWA CSSLLEPMQL SLITCSQCMR KVGLWGFQQI ESSMTDLDAS ENSTTRP00000008018/1-479 ACILSMCGWA CSSSLEPMQL SLITCSQCMR KVGLWGFQQI ESSMTDLDAS bmy_08072T0/1-477 SCILSLCGWA CSSSLEPMQL SLITCSQCMR KVGLWGFQQI ESSMTDLDAS BACU006803/1-522 SCILSLCGWA CSSSLEPMQL SLITCSQCMR KVGLWGFQQI ESSMTDLDAS 301 350 ENSP00000351052/1-502 FGLTSSPIPG LEGRPERLPL VPESPRRMMT RSQDATFSPG SEQAEKSPGP ENSBTAP00000014941/1-502 LGLTPSPVPG SEGRPERSPL VPESPRRMVT RSQDTIFSPG SEQAEKSPGP ENSTTRP00000008018/1-479 FGLTSSPIPG SECRPERFSL VPESPRRMMT RSQDATFSPG SEQAERSPGP bmy_08072T0/1-477 FGLTSSPIPG SECRPERFSX VPESPRRMMT RSQDATFSPG SEQAERSPGP BACU006803/1-522 FGLTSSPIPG SECRPERFSL VPESPRRMMT RSQDASFSPG SEQAERSPGP 351 400 ENSP00000351052/1-502 IVSRTRSWDS SSPVDRPEPE AASPTTRTRP VTRSMGTGDT PGLEVPSSPL ENSBTAP00000014941/1-502 IVSRTRSGDS SSPVDRPELE AASPATRTRP VTRSMGTGDS AGLEVPSSPL ENSTTRP00000008018/1-479 IVSRTRSLDS SSPVDRPEPE AASPTPRTRP VTRSMGTGDA TGLEVPSSPL bmy_08072T0/1-477 IVSRTRSWDS SSPVDRPEPE AASPTTRTRP VTRSMGTGDT TGLEVPSSPL BACU006803/1-522 IVSRTRSWDS SSPVDRPEPE AASPTTRTRP VTRSMGTGDT TGLEVPSSPL 401 450 ENSP00000351052/1-502 RKAKRARLCS SSSSDTSSRS FFDPTSQHRD WCPWVNITLG KESRENGGTE ENSBTAP00000014941/1-502 RKAKRARLCS SSSLDASSRS FFDPTSQHRD WCPWVNITLG KETKENGGTE ENSTTRP00000008018/1-479 RRAKRARLCS SSSSDTSSRS FFDPTSQHRD WCPWVNITFG KETRENGGTE bmy_08072T0/1-477 RRAKRARLCS SGSSDTSSRS FFDPTSQHRD WCPWVNITFG KETRENGGTE BACU006803/1-522 RRAKRARLCS SSSSDTSSRS FFDPTSQHRD WCPWVNITFG KETRENGGTE 451 500 ENSP00000351052/1-502 PDASAPAEPG WKAVLTILLA HKQSSQPAET DSMS------ ------LSEK ENSBTAP00000014941/1-502 VDASTPAEPG WKAVLNILLA HKQSNQPAET NSMS------ ------LSEK ENSTTRP00000008018/1-479 VDASTPAEPG WKAVLNILLA HKESNQPTET DSMS------ ------LSEK bmy_08072T0/1-477 VDASTPAEPG WKAVLNILLA HKESNQPAET DSMS------ ------LSEK BACU006803/1-522 VDASTPAEPG WKAVLNILLA HKESNQPAEA DSMQVKAVWP QRHSSKLSEE 501 550 ENSP00000351052/1-502 SRKVFRIFRQ -----WESLC SC ENSBTAP00000014941/1-502 SRKVFRIFRQ -----WESLC SS ENSTTRP00000008018/1-479 SRKVFRIFRQ -----WESLS SS bmy_08072T0/1-477 SRKVFRIFRQ -----WESLC SS BACU006803/1-522 PRGSLTTGQR PQDPSWEEQN QT