KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:10 2014 Check: 00 .. Name: ENSTTRP00000002437/1-1267 Len: 1312 Check: 9344 Weight: 1.00 Name: ENSP00000265335/1-1312 Len: 1312 Check: 5454 Weight: 1.00 Name: ENSBTAP00000014945/1-1312 Len: 1312 Check: 8115 Weight: 1.00 Name: bmy_08350T0/1-734 Len: 1312 Check: 8912 Weight: 1.00 Name: BACU013067/1-1312 Len: 1312 Check: 6579 Weight: 1.00 // 1 50 ENSTTRP00000002437/1-1267 ---------- ---------- ---------- ---------- ---TIVECLK ENSP00000265335/1-1312 MSRIEKMSIL GVRSFGIEDK DKQIITFFSP LTILVGPNGA GKTTIIECLK ENSBTAP00000014945/1-1312 MSRIEKMSIQ GVRSFGIEDK DKQIITFFSP LTILVGPNGA GKTTIIECLK bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 MSRIEKMSIL GVRSFGIEDK DKQIITFFSP LTILVGPNGA GKTTIIECLK 51 100 ENSTTRP00000002437/1-1267 YICTGDFPPG TKGNTFVHDP KVAQETDVRA QIRLQFRDVN GELVAVQRSM ENSP00000265335/1-1312 YICTGDFPPG TKGNTFVHDP KVAQETDVRA QIRLQFRDVN GELIAVQRSM ENSBTAP00000014945/1-1312 YICTGDFPPG TKGNTFVHDP KVAQETDVRA QIRLQFRDVN GEVVAVQRSM bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 YICTGDFPPG TKGNTFVHDP KVAQETDVRA QIRLQFRDVN GELVAVQRSM 101 150 ENSTTRP00000002437/1-1267 VCTQKSKKTE FKTLEGVITR TKHGEKVSLS SKCAEIDREM ISSLGVSKSV ENSP00000265335/1-1312 VCTQKSKKTE FKTLEGVITR TKHGEKVSLS SKCAEIDREM ISSLGVSKAV ENSBTAP00000014945/1-1312 LCTQKSKKTE FKTLEGVITR TKHGEKVSLS SKCAEIDREM ISSLGVSKSV bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 VCTQKSKKTE FKTLEGVITR TKHGEKVSLS SKCAEIDREM ISSLGVSKSV 151 200 ENSTTRP00000002437/1-1267 LNNVIFCHQE ESNWPLSEGK ALKQKFDEIF SATRYIKALE TLRQVRQTQG ENSP00000265335/1-1312 LNNVIFCHQE DSNWPLSEGK ALKQKFDEIF SATRYIKALE TLRQVRQTQG ENSBTAP00000014945/1-1312 LNNVIFCHQE ESNWPLSEGK ALKQKFDEIF SATRYIKALE TLRQVRQTQG bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 LNNVIFCHQE ESNWPLSEGK ALKQKFDEIF SATRYIKALE TLRQVRQTQG 201 250 ENSTTRP00000002437/1-1267 QKVKECQTEL KYLKQNKEKA CDIRDQITRK EAQLTSSKEI VKSYENELDP ENSP00000265335/1-1312 QKVKEYQMEL KYLKQYKEKA CEIRDQITSK EAQLTSSKEI VKSYENELDP ENSBTAP00000014945/1-1312 QKVKECQTEL KYLKQNKEKA CEIRDQITSK EAQLTSSREI VKSYENELDP bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 QKVKECQTEL KYLKQNKEKA CEIRDQITSK EAQLTSSKEI VKSYENELDP 251 300 ENSTTRP00000002437/1-1267 LKNRLKEIEQ NLSKIMRLDN ETKALGSRKK QMEKDNSELE QKMEKVFQGS ENSP00000265335/1-1312 LKNRLKEIEH NLSKIMKLDN EIKALDSRKK QMEKDNSELE EKMEKVFQGT ENSBTAP00000014945/1-1312 LKNRLKEIEQ NLSKIMRLDN EIKALESRKK QMEKDNSELE QKMEKVFQGS bmy_08350T0/1-734 ---------- -----MRLDN EIKALDSRKK QMEKDNSELE QKMEKVFQGS BACU013067/1-1312 LKNRLKEIEQ NLSKIMRLDN EIKALDSRKK QMEKDNSELE QKMEKVFQGS 301 350 ENSTTRP00000002437/1-1267 DEQLNDLYHN HQRTVREKER RLVECQRELE KLNKESRLLN EEKSELLVEQ ENSP00000265335/1-1312 DEQLNDLYHN HQRTVREKER KLVDCHRELE KLNKESRLLN QEKSELLVEQ ENSBTAP00000014945/1-1312 DEQLNDLYHN HQRTVREKER RLVDCQRELE KLNKESRLLN QEKSELLVEQ bmy_08350T0/1-734 DEQLNDLYHN HQRTVSEKER RLVECQRELE KLNKVSRLLN QEKSELLVEQ BACU013067/1-1312 DEQLNDLYHN HQRTVREKER RLVECQRELE KLNKESRLLN QEKSELLVEQ 351 400 ENSTTRP00000002437/1-1267 GRLQLQADRH QEHMRARDSL IQSLATQLEL DGFKHGPFNE RQIKNFHKLV ENSP00000265335/1-1312 GRLQLQADRH QEHIRARDSL IQSLATQLEL DGFERGPFSE RQIKNFHKLV ENSBTAP00000014945/1-1312 GRLQLQADRH QEHMQARDSL IQSLATQLEL DGFELGPFSE RQIKNFHRLV bmy_08350T0/1-734 ---------- ---------- --------EL DGFEHGPFSE RQIKNFHKLV BACU013067/1-1312 GRLQLQADRH QEHMRARDSL IQSLATQLEL DGFEHGPFSE RQIKNFHKLV 401 450 ENSTTRP00000002437/1-1267 RERQEKEAET ARQLMNDFAE KETLKQKQID EIRDKKTGLG RIIELKSEIL ENSP00000265335/1-1312 RERQEGEAKT ANQLMNDFAE KETLKQKQID EIRDKKTGLG RIIELKSEIL ENSBTAP00000014945/1-1312 RERQEKEAET ASQLLNDFVR KEALKQKQID EIRDKKTGLG RIIELKSEIL bmy_08350T0/1-734 RERQEKEAET ARLLMNDFAE KETLKRKQID EIRDEKTGLG RIIELKSEIL BACU013067/1-1312 RERQEKEAET ARLLMNDFAE KETLKRKQID EIRDEKTGLG RIIELKSEIL 451 500 ENSTTRP00000002437/1-1267 TKKQSELKNV KYELQQLEGS SDRILELDQE LTKAERELSK AEKNSNVETL ENSP00000265335/1-1312 SKKQNELKNV KYELQQLEGS SDRILELDQE LIKAERELSK AEKNSNVETL ENSBTAP00000014945/1-1312 TKKQNELKNV KYELQQLEGS SDRILELDQE LTKAERELSK AEKNSNVETL bmy_08350T0/1-734 TKKQNELKNV KYELQQLEGS SDRILELDQE LTKAERELSK AEKNSNVETL BACU013067/1-1312 TKRQNELKNV KYELQQLEGS SDRILELDQE LTKAERELSK AEKNSNVETL 501 550 ENSTTRP00000002437/1-1267 KTEVISLQNE KADLDRTLRK LDQEMEQLNH HTATRTQMEM LTKDKADKDE ENSP00000265335/1-1312 KMEVISLQNE KADLDRTLRK LDQEMEQLNH HTTTRTQMEM LTKDKADKDE ENSBTAP00000014945/1-1312 KTEVISLQNE KADLDRTLRK LDQEMEQLNH HTATRTQMEM LTKDKADKDE bmy_08350T0/1-734 KTEVISLQNE KADLDRTLRK LDQEMEQLNH HTATRTQMEM LTKDKADKDE BACU013067/1-1312 KTEVISLQNE KADLDRTLRK LDQEMEQLNH HTATRTQMEM LTKDKADKDE 551 600 ENSTTRP00000002437/1-1267 QIRKIKSRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE ENSP00000265335/1-1312 QIRKIKSRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE ENSBTAP00000014945/1-1312 QIRKIKYRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE bmy_08350T0/1-734 QIRKIKSRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE BACU013067/1-1312 QIRKIKSRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE 601 650 ENSTTRP00000002437/1-1267 LASAEQNKNH INNELKKKEE KLSSYEDKLF DVCGSQDFES DLDRLKEEIE ENSP00000265335/1-1312 LASSEQNKNH INNELKRKEE QLSSYEDKLF DVCGSQDFES DLDRLKEEIE ENSBTAP00000014945/1-1312 LASAEQNKNH INTELKRKEE QLSSYEDKLF DVCGSQDFES DLDRLKEEIE bmy_08350T0/1-734 LASAEQNKNH INNELKRKEE KLSSYEDKLF DVCGSQDFES DLDRLKEEIE BACU013067/1-1312 LASAEQNKNH INNELKRKEE KLSSYEDKLF DVCGSQDFES DLDRLKEEIE 651 700 ENSTTRP00000002437/1-1267 KSSKQRAMLA GATAVYSQFI TQLTDEHQSC CPVCQRVFQT EAELQEVIND ENSP00000265335/1-1312 KSSKQRAMLA GATAVYSQFI TQLTDENQSC CPVCQRVFQT EAELQEVISD ENSBTAP00000014945/1-1312 KSSKQRAMLA GATAVYSQFI TQLTDENQSC CPVCQRGFQT EAELQEVISD bmy_08350T0/1-734 KSSKQ----- ---------- ---------- ---------- ---------- BACU013067/1-1312 KSSKQRAMLA GATAVYSQFI TQLTDEDQSC CPVCQRVFQT EAELQEVISD 701 750 ENSTTRP00000002437/1-1267 LQSKLRLAPD KLKSTESELK KKKRR--DML GLVPMRQSII DLKEKEIPEL ENSP00000265335/1-1312 LQSKLRLAPD KLKSTESELK KKEKRRDEML GLVPMRQSII DLKEKEIPEL ENSBTAP00000014945/1-1312 LQSKLRLAPD KLKSTESELK KKEKRRDEML GLVPMRQSII DLKEKEIPEL bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 LQSKLRLAPD KLKSTESELK KKEKRRDEML GLVPMRQSII DLKEKEIPEL 751 800 ENSTTRP00000002437/1-1267 RNKLQNVNRD IQRLKNDIEE QETLLGTIIP EEESAKVCLT DVTIMERFQM ENSP00000265335/1-1312 RNKLQNVNRD IQRLKNDIEE QETLLGTIMP EEESAKVCLT DVTIMERFQM ENSBTAP00000014945/1-1312 RNKLQNVNRD IQRLKNDIEE QETLLGAIIP EEESAKVCLT DVTIMERLQM bmy_08350T0/1-734 --------RD IQRLKNDIEE QETLLGTIIP EEESAKVCLT DVTIMERFQM BACU013067/1-1312 RNKLQNVNRD IQRLKNDIEE QETLLGTIIP EEESAKVCLT DVTIMERFQM 801 850 ENSTTRP00000002437/1-1267 ELKDVERKIA QQAAKLQGLD FDRTVQQVNQ EKQEKQHKLD TVSSKIELNR ENSP00000265335/1-1312 ELKDVERKIA QQAAKLQGID LDRTVQQVNQ EKQEKQHKLD TVSSKIELNR ENSBTAP00000014945/1-1312 ELKDVERKIA QQAAKLQGLD LDRSVQQVNQ EKQEKQHKLD TVSSKIELNR bmy_08350T0/1-734 ELKDVERKIA QQAAKLQGLD LDRTVQQVNQ EKQEKQHKLD TVSSKIELNR BACU013067/1-1312 ELKDVERKIA QQAAKLQGLD LDRTVQQVNQ EKQEKQHKLD TVSSKIELNR 851 900 ENSTTRP00000002437/1-1267 KLIQDQQEQI QHLKSTTNEL KSEKLQISTN LQRRQQLEEQ TVELSTEVQS ENSP00000265335/1-1312 KLIQDQQEQI QHLKSTTNEL KSEKLQISTN LQRRQQLEEQ TVELSTEVQS ENSBTAP00000014945/1-1312 KLIQDQQEQI QHLKSTTNEL KSEKLQISTN LQRRQQLEEQ TVELSTEVQS bmy_08350T0/1-734 KLIQDQQEQI QHLKSTTNEL KSEKLQISTN LQRRQQLEEQ TVELSTEVQS BACU013067/1-1312 KLIQDQQEQI QHLKSTTNEL KSEKLQISTN LQRRQQLEEQ TVELSTEVQS 901 950 ENSTTRP00000002437/1-1267 LYREIKDAKE QVNPLETTLE KYQQEKEELI NKKNTSNKIA QDKINDIKEK ENSP00000265335/1-1312 LYREIKDAKE QVSPLETTLE KFQQEKEELI NKKNTSNKIA QDKLNDIKEK ENSBTAP00000014945/1-1312 LHREIKDAKE QLSPLETTLE KFQQEKEELI NKKNTSHRTA QDKINEIKEK bmy_08350T0/1-734 LYREIKDAKE QVSPLETTLE KFQQEKEELI NKRNTSNKIA QDKINDIKEK BACU013067/1-1312 LYREIKDAKE QVSPLEATLE KFQQEKEELI NKRNTSNKIA QDKINDIKEK 951 1000 ENSTTRP00000002437/1-1267 VKNIHGYVKD IENYIQDGKD DYKKQKETXX XXXXXXXXXX XXXXXXXXXX ENSP00000265335/1-1312 VKNIHGYMKD IENYIQDGKD DYKKQKETEL NKVIAQLSEC EKHKEKINED ENSBTAP00000014945/1-1312 VKNIHSYMKD IENYIQDGKD DYKKQKETEL NKVIAQLSEC DKHKEKINKE bmy_08350T0/1-734 VKNIHGYVKD IENYIQDGKD DYKKQKETEL NKVIAQLSEC EKHKETINKE BACU013067/1-1312 VKNIHGYVKD IENYIQDGKD DYKKQKETEL NKVIAQLSEC EKHREKINKE 1001 1050 ENSTTRP00000002437/1-1267 XXXXXXXXXX XXIQERWLQD NLTLRKRNEE LKEVEEERKQ HLKEMGQMQV ENSP00000265335/1-1312 MRLMRQDIDT QKIQERWLQD NLTLRKRNEE LKEVEEERKQ HLKEMGQMQV ENSBTAP00000014945/1-1312 MGIMRQDIDT QKIQERWLQD NLTLRKRNEE LKEVEEERKQ HLKEMGQMQV bmy_08350T0/1-734 MGIMRQDIDT QKIQERWLQD NLTLRKRNEE LKEVEEERKQ HLKEMGQMQV BACU013067/1-1312 MGIMRQDIDT QKIQERWLQD NLTLRKRNEE LKEVEEERKQ HLKEMGQMQV 1051 1100 ENSTTRP00000002437/1-1267 LQMKNEHQKL EEKIENIKRN LGSAIGRQEG YEEEIIRFKK ELRDPQFWDA ENSP00000265335/1-1312 LQMKSEHQKL EENIDNIKRN HNLALGRQKG YEEEIIHFKK ELREPQFRDA ENSBTAP00000014945/1-1312 LQMKNEHQKL EEKIDNIKRN HSLAIGRQKG YEEEIIHFKK ELREPQFRDA bmy_08350T0/1-734 LQMKNEHQKL EEKIENIKRN HSLAIGRQKG YEEEIIHFKK ELREPQFRDA BACU013067/1-1312 LQMKNEHQKL EEKIENIKRN HSLAIGRQKG YEEEIIHFKK ELREPQFRDA 1101 1150 ENSTTRP00000002437/1-1267 EEKYREMMIV MRTTELVNKD LDIYYKTLDQ AIMKFHSMKM EEINKIIRDL ENSP00000265335/1-1312 EEKYREMMIV MRTTELVNKD LDIYYKTLDQ AIMKFHSMKM EEINKIIRDL ENSBTAP00000014945/1-1312 EEKYREMMII MRTTELVNKD LDIYYKTLDQ AIMKFHSMKM EEINKIIRDL bmy_08350T0/1-734 EEKYREMMIV MRTTELVNKD LDIYYKTLDQ ---------- ---------- BACU013067/1-1312 EEKYREMMIV MRTTELVNKD LDIYYKTLDQ AIMKFHSMKM EEINKIIRDL 1151 1200 ENSTTRP00000002437/1-1267 WRSTYRGQDI EYIEIRSDAD ENVSASDKRR NYNYRVVMLK GDTPLDMRGR ENSP00000265335/1-1312 WRSTYRGQDI EYIEIRSDAD ENVSASDKRR NYNYRVVMLK GDTALDMRGR ENSBTAP00000014945/1-1312 WRSTYRGQDI EYIEIRSDAD ENVSASDKRR NYNYRVVMLK GDTALDMRGR bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 WRSTYRGQDI EYIEIRSDAD ENVSASDKRR NYNYRVVMLK GDTPLDMRGR 1201 1250 ENSTTRP00000002437/1-1267 CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDRE NIESLAHALV ENSP00000265335/1-1312 CSAGQKVLAS LIIRLALAET FCLNCGIIAL DEPTTNLDRE NIESLAHALV ENSBTAP00000014945/1-1312 CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDRE NIESLAHALV bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDRE NIESLAHALV 1251 1300 ENSTTRP00000002437/1-1267 EIIKSRSQQR NFQLLVITHD EDFVELLGRS EYVEKFYRIK KNIDQCSEIV ENSP00000265335/1-1312 EIIKSRSQQR NFQLLVITHD EDFVELLGRS EYVEKFYRIK KNIDQCSEIV ENSBTAP00000014945/1-1312 EIIKSRSQQR NFQLLVITHD EDFVELLGRS EYVEKFYRIK KNIEQCSQIV bmy_08350T0/1-734 ---------- ---------- ---------- ---------- ---------- BACU013067/1-1312 EIIKSRSQQR NFQLLVITHD EDFVELLGRS EYVEKFYRIK KNIDQCSEIV 1301 1350 ENSTTRP00000002437/1-1267 KCSISSLGSN VH ENSP00000265335/1-1312 KCSVSSLGFN VH ENSBTAP00000014945/1-1312 TCSVSSLGSY VH bmy_08350T0/1-734 ---------- -- BACU013067/1-1312 KCSISSLGSN VH