KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:54:10 2014 Check: 00 .. Name: ENSP00000316674/1-416 Len: 416 Check: 8075 Weight: 1.00 Name: ENSBTAP00000014947/1-416 Len: 416 Check: 1398 Weight: 1.00 Name: bmy_11758T0/1-377 Len: 416 Check: 5194 Weight: 1.00 Name: BACU002523/1-416 Len: 416 Check: 1914 Weight: 1.00 // 1 50 ENSP00000316674/1-416 MDASRPKSSE SQSSLEAPRP GPNPSPNVVN KPLQRDFPGM VADRLPPKTG ENSBTAP00000014947/1-416 MDPNQGNPLE PQDSPEIPKP SLNLSSILAK STLPQEPPSM VGDRLPPKTG bmy_11758T0/1-377 ---------- ---------- ---------- ---------M VGDRLPPKTR BACU002523/1-416 MDPNRGNPPG PQTSPEAPKP SLNPCSILAN NTMPQDPPSM VGDRLPPKTR 51 100 ENSP00000316674/1-416 VVVIDMGTGT CKVGFAGQAS PTYTVATILG CQPKKPATSG QSGLQTFIGE ENSBTAP00000014947/1-416 AVVIDMGTGT CKVGFAGQAR PTYTVATIVG CQPQKPATSG QPVMETFIGE bmy_11758T0/1-377 AVVIDMGTGT CKVGFAGQAR PTYTVATVVG CQPKKPTTTG PPVLETFIGE BACU002523/1-416 AVVIDMGTGT CKVGFAGQAR PTYTVATVVG CQPKKPTTTG PPVLETFIGE 101 150 ENSP00000316674/1-416 AARVLPELTL VQPLRSGIVV DWDAAELIWR HLLEHDLRVA THDHPLLFSD ENSBTAP00000014947/1-416 AARKRPELTL VQPVHSGIVV DWDAAELIWR HMLEHDLRVA TRDHPLLFSD bmy_11758T0/1-377 AARTRPELMR VQPVRNGIVL GWDAAELIWR HVLEHDLRVT PRDHPLLFSD BACU002523/1-416 AARTRPELMR VQPVRNGIVV DWDAAELIWR HVLEHDLRVT PRDHPLLFSD 151 200 ENSP00000316674/1-416 PPFSPATNRE KLVEVAFESL RSPAMYVASQ SVLSVYAHGR VSGLVVDTGH ENSBTAP00000014947/1-416 PPFSPSTNRE KLVEVAFESL SSPAMYVASQ SVLSVYAHGR VSGLVVDTGH bmy_11758T0/1-377 PPFSPTTNRE KLVEVVFESL GSPAMYVASQ SVLSAYAHGR VSGLVVDAGH BACU002523/1-416 PPFSPTTNRE KLVEVVFESL GSPAMYVASQ SVLSAYAHGR VSALVVDAGH 201 250 ENSP00000316674/1-416 GVTYTVPVFQ GYNLLHATER LDLAGNHLTA FLAEMLLQAG LPLGQQDLDL ENSBTAP00000014947/1-416 GVTYTVPVFQ GYNLPHATQR LDLAGTHLTA FLAEMLLGSG LPLGQQDLDT bmy_11758T0/1-377 GVTYTVPVFQ GYNLPHATQR LDLAGTHLTA FLAETLLGSG LPLGQQDLDT BACU002523/1-416 AVTYTVPVFQ GYNLPHATQR LDLAGTHLTA FLAEMLLGSG LPLGQQDLDT 251 300 ENSP00000316674/1-416 VENIKHHYCY VASDFQKEQA RPEQEYKRTL KLPDGRTVTL GKELFQCPEL ENSBTAP00000014947/1-416 VENIKHRYCY VAPDFLKEQA RPELECRQTL KLPDGRTVTL GKELFQCPEL bmy_11758T0/1-377 VENIKRRYCY VASDFLKAQA RPEGECRQTL KLPDGRMVTL GKELFRCPEL BACU002523/1-416 VENIKRRYCY VASDFLKTQA RPEGECRQTL KLPDGRTVTL GKELFRCPEL 301 350 ENSP00000316674/1-416 LFNPPEVPGL SPVGLSTMAK QSLRKLSLEM RADLAQNVLL CGGSSLFTGF ENSBTAP00000014947/1-416 LFSPPEIPGL SPVGVPTMAQ QSLSKVAAEL RTDLAQNVLL CGGSSLFTGF bmy_11758T0/1-377 LFSPPEMPGL SPVGVPTMAK QSLQKVPLEL RTDVAQNVLL CGGSSLFAGF BACU002523/1-416 LFSPPEIPGL SPVGVPTMAK QSLQKVPLEV RTDVAQNVLL CGGSSLFAGF 351 400 ENSP00000316674/1-416 EGRFRAELLR ALPAETHVVV AAQPTRNFSV WIGGSILASL RAFQSCWVLR ENSBTAP00000014947/1-416 QARFQTELLR NLPPEAHVVV MAQPTRNFSV WIGGSILASL RTFQSCWVLR bmy_11758T0/1-377 EGRFRAELLR ALPPEAHVVV AAQPTRSFSV WIGGSILASL RAFKFCWVLR BACU002523/1-416 EGRFRAELLR ALPPEAHVVV AAQPTRSFSV WIGGSILASL RAFKFCWVLR 401 450 ENSP00000316674/1-416 EQYEEQGPYI VYRKCY ENSBTAP00000014947/1-416 EQYEEQGPYI VYRKCY bmy_11758T0/1-377 EHYEEQGPHV VYRKCC BACU002523/1-416 EHYEEQGPHV VYRKCC