KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:14 2014 Check: 00 .. Name: bmy_08784T0/1-603 Len: 669 Check: 2519 Weight: 1.00 Name: BACU015457/1-635 Len: 669 Check: 5899 Weight: 1.00 Name: ENSTTRP00000013093/1-624 Len: 669 Check: 446 Weight: 1.00 Name: ENSP00000440328/1-581 Len: 669 Check: 9457 Weight: 1.00 Name: ENSBTAP00000014986/1-584 Len: 669 Check: 5843 Weight: 1.00 // 1 50 bmy_08784T0/1-603 ------KVLP DLLA------ ------GPRC RTGPLDLVFV IDSSRSVRPF BACU015457/1-635 MRGLLCSLLP MLLLLLQPWE TQLQFAGPRC RTGPLDLVFV IDSSRSVRPF ENSTTRP00000013093/1-624 MRGRLCSQLP MFLLLLQPWE TQLQFAGPRC RTGPLDLVFV IDSSRSVRPF ENSP00000440328/1-581 MRGLLC--WP VLLLLLQPWE TQLQLTGPRC HTGPLDLVFV IDSSRSVRPF ENSBTAP00000014986/1-584 MRGLLYSLLP LLLLLLQPWE TQLQLAGPRC SSGPLDLVFV IDSSRSVRPF 51 100 bmy_08784T0/1-603 EFQTMRQFLV GLLRSLDVGP NATRVGVIQY SSQVQSVFPL GTFSRREDME BACU015457/1-635 EFQTMRQFLV GLLRSLDVGP NATRVGVIQY SSQVQSVFPL GTFSRREDME ENSTTRP00000013093/1-624 EFQTMRQFLV SLLRSLDVGP NATRVGVIQY SSQVQSVFPL GTFSRREDME ENSP00000440328/1-581 EFETMRQFLM GLLRGLNVGP NATRVGVIQY SSQVQSVFPL RAFSRREDME ENSBTAP00000014986/1-584 EFETMRQFLV GLLRSLDVGP NATRVGVIQY SSQVQSVFPL RAFSRREDME 101 150 bmy_08784T0/1-603 RAIRALVPLA QGTMTGLAIQ YTVNVAFSVA EGARPPEARV PRVAVIVTDG BACU015457/1-635 RTIRALVPLA QGTMTGLAIQ YTMNVAFSVA EGARPPEARV PRVAVIVTDG ENSTTRP00000013093/1-624 RAIRTLVPLA QGTMTGLAIQ YAMNVAFSVA EGARPPEARV PRVAVIVTDG ENSP00000440328/1-581 RAIRDLVPLA QGTMTGLAIQ YAMNVAFSVA EGARPPEERV PRVAVIVTDG ENSBTAP00000014986/1-584 RAIRAVVPLA QGTMTGLAIQ YAMNVAFSVA EGARPPEAHV PRVAVIVTDG 151 200 bmy_08784T0/1-603 RPQDRVAEVA AQARARGIEI YAVGVQRADV ASLRAMASPP LDEHVFLVES BACU015457/1-635 RPQARVAEVA AQARARGIEI YAVGVQRADV ASLRAMASPP LDEHVFLVES ENSTTRP00000013093/1-624 RPQDRVAEVA AQARARGIEI YAVGVQRADV ASLRAMASPP LDEHVFLVES ENSP00000440328/1-581 RPQDRVAEVA AQARARGIEI YAVGVQRADV GSLRAMASPP LDEHVFLVES ENSBTAP00000014986/1-584 RPQDRVAEVA AQARARGIEI YAVGVQRADV GSLRAMASPP LNEHVFLVES 201 250 bmy_08784T0/1-603 FDRIQEFGLQ FQRRLCRKDL CAEGGHGCQH QCVSSPGTFH CACNP----- BACU015457/1-635 FDRIQEFGLQ FQRRLCRKDL CAEGGHGCQH QCVSSPGTFH CACNPGYRLA ENSTTRP00000013093/1-624 FDRIQEFGLQ FQRRLCRKDL CAEGGHGCQH QCVSSPGTFH CACNPGYRLA ENSP00000440328/1-581 FDLIQEFGLQ FQSRLCAIDL CAEGTHGCEH HCVNSPGSYF CHCQV----- ENSBTAP00000014986/1-584 FDLIQEFGRQ FQGRLCTLDL CTEGDHGCEH QCVSMPGSYF CRCQA----- 251 300 bmy_08784T0/1-603 ---------- ---------- ---------- ------GYRL AADDKSCLAI BACU015457/1-635 ADDKSCLALD LCTEGTHGCE HHCVSSPGFY FCRCRAGFVL QQDQRSCRAI ENSTTRP00000013093/1-624 ADDKSCLALD LCTEGTHGCE HHCVSSPGFY FCRCRAGFVL QQDQRSCRAI ENSP00000440328/1-581 ---------- ---------- ---------- ------GFVL QQDQRSCRAI ENSBTAP00000014986/1-584 ---------- ---------- ---------- ------GFVL QQEQRSCRAI 301 350 bmy_08784T0/1-603 DYCSFGNHSC QHECVSTFGG PRCRCRGGYN LLPDGRSCQA QDLCNGVDHG BACU015457/1-635 DHCSFGNHSC QHECVSTFGG PRCRCRGGYN LLPDGRSCQA QDLCNGVDHG ENSTTRP00000013093/1-624 DHCSFGNHSC QHECVSTFGG PRCRCRGGYN LLPDGRSCQA QDLCNGVDHG ENSP00000440328/1-581 DYCSFGNHSC QHECVSTPGG PRCHCREGHD LQPDGRSCQV RDLCNGVDHG ENSBTAP00000014986/1-584 DHCSFGNHSC QHDCVSIYGG PQCRCREGYD LLPDGRSCQA RDLCNGVDHG 351 400 bmy_08784T0/1-603 CEFQCVSEGF SYRCLCPERW QLQADGKSCS RCREGHVDLV LLVDGSKSVR BACU015457/1-635 CEFQCVSEGF SYRCLCPERW QLQADGKSCS RCREGHVDLV LLVDGSKSVR ENSTTRP00000013093/1-624 CEFQCVSEGF SYRCLCPERW QLQADGKSCS RCQEGHVDLV LLVDGSKSVR ENSP00000440328/1-581 CEFQCVSEGL SYRCLCPEGR QLQADGKSCN RCREGHVDLV LLVDGSKSVR ENSBTAP00000014986/1-584 CEFQCVSEGF SYRCVCPEGR QLQADGKSCS RCREGHVDLV LLVDGSKSVR 401 450 bmy_08784T0/1-603 PQNFELVKRF VNQIVDFLDV SPEGTRVGLV QFSSRVRTEF PLGRYGTAAE BACU015457/1-635 PQNFELVKRF VNQIVDFLDV SPEGTRVGLV QFSSRVRTEF PLGRYGTAAE ENSTTRP00000013093/1-624 PQNFELVKRF VNQIVDFLDV SPEGTRVGLV QFSSRVRTEF PLGRYGTAAE ENSP00000440328/1-581 PQNFELVKRF VNQIVDFLDV SPEGTRVGLV QFSSRVRTEF PLGRYGTAAE ENSBTAP00000014986/1-584 PQNFELVKRF VNQIVDFLDV SPEGTRVGLV QFSSRVRTEF PLGRYGTAAE 451 500 bmy_08784T0/1-603 VKQAVLAVEY MERGTMTGLA LRHMVEHSFS EAQGARPRAL NVPRVGLVFT BACU015457/1-635 VKQAVLAVEY MERGTMTGLA LRHMVEHSFS EAQGARPRAL NVPRVGLVFT ENSTTRP00000013093/1-624 VKQAVLAVEY MERGTMTGLA LRHMVEHSFS EAQGARPRAL NVPRVGLVFT ENSP00000440328/1-581 VKQAVLAVEY MERGTMTGLA LRHMVEHSFS EAQGARPRAL NVPRVGLVFT ENSBTAP00000014986/1-584 VKQAVLAVEY MERGTMTGLA LRHMVEHSFS EAQGARPRAL NVPRVGLVFT 501 550 bmy_08784T0/1-603 DGRSQDDVSV WAARAKEEGI VMYAVGVGKA VEEELRZIAS EPAELHVSYS BACU015457/1-635 DGRSQDDVSV WAARAKEEGI VMYAVGVGKA VEEELREIAS EPAELHVSYS ENSTTRP00000013093/1-624 DGRSQDDVSV WAARAKEEGI VMYAVGVGKA VEEELREIAS EPAELHVSYS ENSP00000440328/1-581 DGRSQDDISV WAARAKEEGI VMYAVGVGKA VEAELREIAS EPAELHVSYA ENSBTAP00000014986/1-584 DGRSQDNISV WAARAKEEGI VMYAVGVGKA VEEELREIAS EPAELHVSYS 551 600 bmy_08784T0/1-603 PDFSTMTHLL ENLKGSICPD LAKRQDWVCF RGGHQRGDRA SEPLRVRKSC BACU015457/1-635 PDFSTMTHLL ENLKGSICPE ---------- -----EGISA GTELRSPCEC ENSTTRP00000013093/1-624 PDFSTMTHLL ENLKGSICPE ---------- -----EGISA GTELRSPCEC ENSP00000440328/1-581 PDFGTMTHLL ENLRGSICPE ---------- -----EGISA GTELRSPCEC ENSBTAP00000014986/1-584 PDFSTMTHLL ENLKGSICPE ---------- -----EGIGA GTELRSPCEC 601 650 bmy_08784T0/1-603 GVPGPHAGGA RESVAESYPL GPGARAGGEK GPPAT--PGG FLNRSLAQLA BACU015457/1-635 ---------- -ESLVEF--- -----QGRTL EALESLSQNH ILWVPGHGLE ENSTTRP00000013093/1-624 ---------- -ESLVEF--- -----QGRTL GALES----- -LSQNLAQLT ENSP00000440328/1-581 ---------- -ESLVEF--- -----QGRTL GALES----- -LTLNLAQLT ENSBTAP00000014986/1-584 ---------- -ESLVEF--- -----QGRTL GALES----- FLNLPLAQLT 651 700 bmy_08784T0/1-603 ARLEDLENQL ATQK----- BACU015457/1-635 GRRDPPRPPA ASLTAHWPS ENSTTRP00000013093/1-624 ARLEDVENQL ATQK----- ENSP00000440328/1-581 ARLEDLENQL ANQK----- ENSBTAP00000014986/1-584 ARLEDLENQL ATQK-----