KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:15 2014 Check: 00 .. Name: bmy_08785T0/1-264 Len: 556 Check: 6229 Weight: 1.00 Name: ENSP00000341243/1-517 Len: 556 Check: 4498 Weight: 1.00 Name: ENSBTAP00000014992/1-517 Len: 556 Check: 4459 Weight: 1.00 Name: BACU015456/1-516 Len: 556 Check: 1010 Weight: 1.00 Name: ENSTTRP00000013095/1-517 Len: 556 Check: 4092 Weight: 1.00 // 1 50 bmy_08785T0/1-264 NGPFL----- ----PFIAFH LPPSGAXPPR PLTLPAAGGR PVPTP--RSS ENSP00000341243/1-517 MDPAGAADPS VPPNPLTHLS LQDRSEMQLQ ----SEADRR SLPGTWTRSS ENSBTAP00000014992/1-517 MDPVGA-DPS APPGPLTHLS LPDSSEARPQ ----SGADGR SLPGSWTRSS BACU015456/1-516 MDPVGA-DPS AHPGPLTHLS LPDSSEARPQ ----SGADGR SLPGSWTRSS ENSTTRP00000013095/1-517 MDPVGA-DPS AHPGPLTHLS LPDSSEARPQ ----SGADXX XXXXXXXXSS 51 100 bmy_08785T0/1-264 PEPAAVLREG VRQCLQQQCE QTVRILHAKV AQKSYGNEKR TWRGLRAQLL ENSP00000341243/1-517 PEHTTILRGG VRRCLQQQCE QTVRILHAKV AQKSYGNEKR FFCPPPCVYL ENSBTAP00000014992/1-517 SEPSAVLREG VRRCLQQQCE QTVWILHAKV AQKSYGNEKR FFCPPPCVYL BACU015456/1-516 PEPAAVLREG VRQCLQQQCE QTVWILHAKV AQKSYGNEKR FFCPPPCVYL ENSTTRP00000013095/1-517 PEPAAVLREG VRQCLQQQCE QTVRILHAKV AQKSYGNEKR FFCPPPCVYL 101 150 bmy_08785T0/1-264 ANQGPFPSAT ISPDFAHQAG ETGPVVCGYM GLDGASGSGA ETQKLNFEEQ ENSP00000341243/1-517 S--GPGWRVK PGQDQAHQAG ETGPTVCGYM GLDSASGSAT ETQKLNFEQQ ENSBTAP00000014992/1-517 A--GPGWRVK PVPGQAHQAG QTGPLVCGYM GLDGASGSAA ETQKLNFEEQ BACU015456/1-516 A--GPGWRVK PVQGQAHQAG ETGPVVCGYM GLDGASGSAA ETQKLNFEEQ ENSTTRP00000013095/1-517 A--GPGWRVK PVQGQAHQAG ETGPIVCGYM GLDGASGSAA ETQKLNFEEQ 151 200 bmy_08785T0/1-264 PDSREFGCAK TLYISDADKR KHFRLVLRLV LRGGRELGTF HSRLIKVISK ENSP00000341243/1-517 PDSREFGCAK TLYISDADKR KHFRLVLRLV LRGGRELGTF HSRLIKVISK ENSBTAP00000014992/1-517 PDSREFSCAK TLYISDADKR KHFRLVLRLM LRGGRELGTF HSRLIKVISK BACU015456/1-516 PDSREFGCAK TLYISDADKR KHFRLVLRLV LRGGRELGTF HSRLIKVISK ENSTTRP00000013095/1-517 PDSREFGCAK TLYISDADKR KHFRLVLRLV LRGGRELGTF HSRLIKVISK 201 250 bmy_08785T0/1-264 PSQKKQSLKN TDPRLAQGTE DGNLPGKSKG PSQAGALIPP PLTVCISSGS ENSP00000341243/1-517 PSQKKQSLKN TD-------- ---------- ---------- ---LCISSGS ENSBTAP00000014992/1-517 PSQKKQSLKN TD-------- ---------- ---------- ---LCISSGS BACU015456/1-516 PSQKKQSLKN TD-------- ---------- ---------- ---LCISSGS ENSTTRP00000013095/1-517 PSQKKQSLKN TD-------- ---------- ---------- ---LCISSGS 251 300 bmy_08785T0/1-264 KVSLFNRLRS QTVSTRYLSV EDGDF----- ---------- ---------- ENSP00000341243/1-517 KVSLFNRLRS QTVSTRYLSV EDGAFVASAR QWAAFTLHLA DGHSAQGDFP ENSBTAP00000014992/1-517 KVSLFNRLRS QTVSTRYLSV EDGDFVASAR QWAAFTLHLA DEQCSQGDFP BACU015456/1-516 KVSLFNRLRS QTVSTRYLSV EDGDFVASAR QWAAFTLHLA DEHCSQGDFP ENSTTRP00000013095/1-517 KVSLFNRLRS QTVSTRYLSV ENGDFVASAR QWAAFTLHLA DEHCSQGDFP 301 350 bmy_08785T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000341243/1-517 PREGYVRYGS LVQLVCTVTG ITLPPMIIRK VAKQCALLDV DEPISQLHKC ENSBTAP00000014992/1-517 PREGYVRYGS LVQLVCTVTG ITLPPMIIRK VAKQCALLDV DEPISQLHKC BACU015456/1-516 PREGYVHYGS LVQLICTITG ITLPPMIIRK VAKQCALLDV DEPISQLHKC ENSTTRP00000013095/1-517 PREGYVHYGS LVQLICTVTG ITLPPMIIRK VAKQCALLDV DEPISQLHKC 351 400 bmy_08785T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000341243/1-517 AFQFPGSPPG GGGTYLCLAT EKVVQFQASP CPKEANRALL NDSSCWTIIG ENSBTAP00000014992/1-517 AFQFPGGPPG GGGTYLCLAT EKVVQFQASP CPNEANRALL NDNSCWTIIG BACU015456/1-516 AFQFPGGPPG GGGTYLCLAT EKVVQFQASP CPKEANKALL NDSSCWTIIG ENSTTRP00000013095/1-517 AFQFPGGPPG GGGTYLCLAT EKVVQFQASP CPKEANKAVL NDSSCWTIIG 401 450 bmy_08785T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000341243/1-517 TESVEFSFST SLACTLEPVT PVPLISTLEL SGGGDVATLE LHGENFHAGL ENSBTAP00000014992/1-517 TESVEFSFST SLACTREPVT PVPLISTLEL SGGGDVATLE LHGENFHAGL BACU015456/1-516 TESVEFSFST SLACTREPVT PVPLISTLEL SGGGDVATLE LHGENLHAGL ENSTTRP00000013095/1-517 TESVEFSFST SLACTREPVT PVPLISTLEL SGGGDVATLE LHGENLHAGL 451 500 bmy_08785T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000341243/1-517 KVWFGDVEAE TMYRSPRSLV CVVPDVAAFC SDWRWLRAPI TIPMSLVRAD ENSBTAP00000014992/1-517 KVWFGDVEAE TMYRSPRSLV CVVPDVAVFG SDWRWLRTPI TVPVSLVRTD BACU015456/1-516 KVWFGEVEAE TMYRSPRSLV CVVPDVAAFG SDWRWLRTPI TVPVSLVRAD ENSTTRP00000013095/1-517 KVWFGEVEAE TMYRSPRSLV CVVPDIAAFG SDWRWLRTPI TVPVSLVRAD 501 550 bmy_08785T0/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000341243/1-517 GLFYPSAFSF TYTPEYSVRP GHPGV-PEPA TDADALLESI HQEFTRTNFH ENSBTAP00000014992/1-517 GLFYPSAFSF TYTPEYSARP GAPGALAAPA ADADALLESI HHEFTRTNFH BACU015456/1-516 GLFYPSAFSF TYTPEYSVRS GPPGA-SPPA ADADALLESI HHEFTRTNFH ENSTTRP00000013095/1-517 GLFYPSAFSF TYTPEYSVRS GPPGA-SAPA ADADALLESI HHEFTRTNFH 551 600 bmy_08785T0/1-264 ------ ENSP00000341243/1-517 LFIQT- ENSBTAP00000014992/1-517 LFIQT- BACU015456/1-516 LFIQT- ENSTTRP00000013095/1-517 LFIQTQ