KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:16 2014 Check: 00 .. Name: ENSP00000381590/1-945 Len: 958 Check: 8596 Weight: 1.00 Name: ENSBTAP00000014996/1-886 Len: 958 Check: 5619 Weight: 1.00 Name: ENSTTRP00000012922/1-925 Len: 958 Check: 9634 Weight: 1.00 Name: bmy_03778T0/1-745 Len: 958 Check: 1813 Weight: 1.00 Name: BACU015100/1-722 Len: 958 Check: 8619 Weight: 1.00 // 1 50 ENSP00000381590/1-945 MSERAADDVR GEPRRAAAAA GGAAAAAARQ QQQQQQQQQP PPPQPQRQQH ENSBTAP00000014996/1-886 MSERAADDVR GEPRRAAAAA GGAAAAAARQ QQQQPPQPQ- ---------R ENSTTRP00000012922/1-925 MSERAADDVR GEPRRAAAAA VGAAAAATRQ QQQQQQQHQ- -----TLQTQ bmy_03778T0/1-745 ---------- ---------- ---------- ---------- ---------- BACU015100/1-722 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000381590/1-945 PPPPPRRTRP EDGGPGAAST S-AAAMATVG ERRPLPSPEV MLGQSWNLWV ENSBTAP00000014996/1-886 QPPPPRRLRP EDGGPGAAST SAAAAMATVG ERRPLPSPEA MLGQSWNLWV ENSTTRP00000012922/1-925 RQPPPRRIRP EDSGPGAAST STATAMATVG ERRPLPSPEA MMGQSWNLWV bmy_03778T0/1-745 ---------- ---------- ---------- ---------- ---------- BACU015100/1-722 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000381590/1-945 EASKLPGKDG TELDESFKEF GKNREVMGLC REDMPIFGFC PAHDDFYLVV ENSBTAP00000014996/1-886 EASKLPGKDG TELDESFKEF GKNREVMGLC RSYMPIFGLC PAHDDFYLVV ENSTTRP00000012922/1-925 EASKLPGKDG TELDESFKEF GKNREVMGLC REDMPIFGLC PAHDDFYLVV bmy_03778T0/1-745 ---------- ---------- ---------- ---------- ---------- BACU015100/1-722 ---------- ---------- -----MLSFF IADMPIFGLC PAHDDFYLVV 151 200 ENSP00000381590/1-945 CNDCNQVVKP QAFQSHYERR HSSSSKPPLA VPPTSVFSFF PSLSKSKGGS ENSBTAP00000014996/1-886 CNDCNQVVKP QAFQSHYERR HSSSSKPSLA VPPTSVFSFF PSLSKSKGGS ENSTTRP00000012922/1-925 CNDCNQVVKP QAFQSHYERR HSSSSKPSLA VPPTSVFSFF PSLSKSKGGS bmy_03778T0/1-745 ---------- ------SERR HSSSSKPSLA VPPTSVFSFF PSLSKSKGGS BACU015100/1-722 CNDCNQVVKP QAFQSHYERR HSSSSKPSLA VPPTSVFSFF PSLSKSKGGS 201 250 ENSP00000381590/1-945 ASGSNRSSSG GVLSASSSSS KLLKSPKEKL QLRGNTRPMH PIQQSRVPHG ENSBTAP00000014996/1-886 GSGSSRSSSG GVLSTSSLSS KLLKSPKEKL QLRGN-RPMH PIQQNRVPHG ENSTTRP00000012922/1-925 GSGSSRSSSG GVLSASSLSS KLLKSPKEKL QLRGN-RPMH PIQQNRVPHG bmy_03778T0/1-745 GSGSSRSSSG GVLSASSLSS KLLKSPKEKL QLRGN-RPMH PIQQNRVPHG BACU015100/1-722 GSGSSRSSSG GVLSASSLSS KLLKSPKEKL QLRGN-RPMH PIQQNRVPHG 251 300 ENSP00000381590/1-945 RIMTPSVKVE KIHPKMDGTL LKSAVGPTCP ATVSSLVKPG LNCPSIPKPT ENSBTAP00000014996/1-886 RIMTPSIKVE KIHPKMDGTL LKSAVGPTCP APVSSSVKPG LNCPSIPKPT ENSTTRP00000012922/1-925 RIMTPSVKVE KIPPKMDGTL LKSAVGPACP AAVSSSVKPG LNCPSIPKPT bmy_03778T0/1-745 RIMTPSVQVE KIPPKMDGAL LKSAVGPVCP AAVSSSVKPG LNCPSIPKPT BACU015100/1-722 RIMTPSVQVE KIPPKMDGAL LKSAVGPVCP AAVSSSVKPG LNCPSIPKPT 301 350 ENSP00000381590/1-945 LPSPGQILNG KGLPAPPTLE KKPEDNSNNR KFLNKRLSER EFDPDIHCGV ENSBTAP00000014996/1-886 LPSPGHILNG KGLPAPPVLE KKSEDYSNNR KFLNKRLSER EFDPDIHCGV ENSTTRP00000012922/1-925 LPSPGQILNG KGLPAPPTLE KKSEDNSNNR KFLNKRLSER EFDPDIHCGV bmy_03778T0/1-745 LPSPGQILNG KGLPAPPTLE KKSEDNSNNR KFLNKRLSER EFDPDIHCGV BACU015100/1-722 LPSPGQILNG KGLPAPPTLE KKSEDNSNNR KFLNKRLSER EFDPDIHCGV 351 400 ENSP00000381590/1-945 IDLDTKKPCT RSLTCKTHSL TQRRAVQGRR KRFDVLLAEH KNKTREKELI ENSBTAP00000014996/1-886 IDLDTKKPCT RSLTCKTHSL TQRRAVQGRR KRFDVLLAEH KNKTREKESI ENSTTRP00000012922/1-925 IDLDTKKPCT RSLTCKTHSL TQRRAVQGRR KRFDVLLAEH KNKTREKESI bmy_03778T0/1-745 IDLDTKKPCT RSLTCKTHSL TQRRAVQGRR KRFDVLLAEH KNKTREKESI BACU015100/1-722 IDLDTKKPCT RSLTCKTHSL TQRRAVQGRR KRFDVLLAEH KNKTREKESI 401 450 ENSP00000381590/1-945 RHPDSQQPPQ PLRDPHPAPP RTSQEPHQNP HGVIPSESKP FVASKPKPHT ENSBTAP00000014996/1-886 RHPDSQQPAQ PLRDPHPTPP RTSQEPHQNS HGVIPSESKP FIASKPKPHT ENSTTRP00000012922/1-925 RHPDSQQPTQ PLRDPHPTPP RTSQEPHQNS HGVIPSESKP FVASKPKPHT bmy_03778T0/1-745 RHPDSQQPTQ PLRDPHPTPP RTSQEPHQNS HGVIPSESKP FVASKPKPHT BACU015100/1-722 RHPDSQQPTQ PLRDPHPTPP RASQEPHQNP HGVIPSESKP FVASKPKPHT 451 500 ENSP00000381590/1-945 PSLPRPPGCP AQQGGSAPID PPPVHESPHP PLPATEPASR LSSEEGEGDD ENSBTAP00000014996/1-886 PSLPRPPGCP AQQGGSAPID PPPVYESPHP PLPATEPASR LSSEEGEGDD ENSTTRP00000012922/1-925 PSLPRPPGCP AQQGGSAPID PPPVHESPHP PLPATEPASR LSSEEGEGDD bmy_03778T0/1-745 PSLPRPPGCP AQQGGSAPID PPPVHESPHP PLPATEPASR LSSEEGEGDD BACU015100/1-722 PSLPRPPGCP AQQGGSAPID PPPVHESPHP PLPATEPASR LSSEEGEGDD 501 550 ENSP00000381590/1-945 KEESVEKLDC HYSGHHPQPA SFCTFGSRQI GRGYYVFDSR WNRLRCALNL ENSBTAP00000014996/1-886 KEESVEKLDC HYSGHHPQPA SFCTFGSRQI GRGYYVFDSR WNRLRCALNL ENSTTRP00000012922/1-925 KEESVEKLDC HYSGHHPQPA SFCTFGSRQI GRGYYVFDSR WNRLRCALNL bmy_03778T0/1-745 KEESVEKLDC HYSGHHPQPA SFCTFGSRQI GRGYYVFDSR WNRLRCALNL BACU015100/1-722 KEESVEKLDC HYSGHHPQPA SFCTFGSRQI GRGYYVFDSR WNRLRCALNL 551 600 ENSP00000381590/1-945 MVEKHLNAQL WKKIPPVPST TSPISTRIPH RTNSVPTSQC GVSYLAAATV ENSBTAP00000014996/1-886 MVEKHLNAQL WKKIPPVPST TSPVSTRVPH RTNSVPTSHC GVSYLAAATV ENSTTRP00000012922/1-925 MVEKHLNAQL WKKIPPVPST TLPVSTRVPH RTNSVPTSHC GVSCLAAATI bmy_03778T0/1-745 MVEKHLNAQL WKKIPPVPGT ASPVSTRVPH RTNSVPTSHC GVSYLAAATV BACU015100/1-722 MVEKHLNAQL WKKIPPVPGA ASPVSTRAPH RTNSVPTAHC GVSHLAAATV 601 650 ENSP00000381590/1-945 STSPVLLSST CISPNSKSVP AHGTTLNAQP AASGAMDPVC SMQSRQVSSS ENSBTAP00000014996/1-886 SPSPVPLSST CVSPSSKLVP AHGTTLNAQP AASGAVDPVS SMQSRQVSSS ENSTTRP00000012922/1-925 SPSPAPLSSS CISPSSKSVP AHGTTLNGQP AASGAVDPAC SMQSRQVSSS bmy_03778T0/1-745 SPSPVPLSSS CISPCSKSVP AHGTTLNAQP AASGAVDPVC SMQSRQVSSS BACU015100/1-722 SPSPVPLSSA CVSPSSKSVP AHGTTLNAQP AASGAVDPVG SMQSRQLSSS 651 700 ENSP00000381590/1-945 SSSPSTPSGL SSVPSSPMSR KPQKLKSSKS LRPKESSGNS TNCQNASSST ENSBTAP00000014996/1-886 SSSPSTPSGL SSVPSSPMAR KPQKLKSSKS LRPKDSSGNS TNCHNASSSA ENSTTRP00000012922/1-925 SPSPCTPSGL SCVPSSPMAK KPQKLKSSKS LMPKEPSGNS TNCHHASSSA bmy_03778T0/1-745 SSSPSTPSGL SSVPSSPMAR KPQKLKSSKS LRPKESSGNS TNCHHASSSA BACU015100/1-722 SSSPSTPSGL SSVPSSPMAR KPQKLKSSKS LRPKESSGNS TNCHHATSSA 701 750 ENSP00000381590/1-945 S-GGSGKKRK NSSPLLVHSS -------SSS SSSSSSSHSM ESFRKNCVAH ENSBTAP00000014996/1-886 G-GGSGKKRK NSSPLLVPSS -------SSS SSSSSSSHSM ESFRKNCVAH ENSTTRP00000012922/1-925 GSGGS-KKRK NTSPLVVPLP ---------- ------SSHM ESL-ENCVAH bmy_03778T0/1-745 GSGGSGKKRK NTSPLLVPPP SSSSSSSSSS SSSSSSSHSM ESFRKNCVAH BACU015100/1-722 GSGGSGKKRK NTSPLLVPPL -------SSS SSSSSSSX-- ---------- 751 800 ENSP00000381590/1-945 SGPPYPSTVT SSHSIGLNCV TNKANAVNVR HDQSG-RGPP TGSPAESIKR ENSBTAP00000014996/1-886 SGPPHPSAVA SAPGISLNCV ASRANSVGGR HEQPGCRGTS SGNPCESIKR ENSTTRP00000012922/1-925 PGPPHPTAVA SPHGIGLNCV AGKANSVSGR HEQPG-RGA- ---PGESIKR bmy_03778T0/1-745 PGPPHPAAVA SPHGVGLNCV AGRANSVSGR HEQPG-RGAP GGSPGESIKR BACU015100/1-722 ---------- ---------- ---------- ------RGAP GGSPGESIKR 801 850 ENSP00000381590/1-945 MSVMVNSSDS TLSLGPFIHQ S-NELPVNSH GSFSHSHTPL DKLIGKKRKC ENSBTAP00000014996/1-886 MSVMVNSGDS TLSLGPFVHQ AGGELPVNSH GAYPHSHTPL DKLLGKKRKC ENSTTRP00000012922/1-925 MSVMVNSGDS TLSLGPFVHQ A-GELPVSSH GACSHPHTPL DKLLGKKRKC bmy_03778T0/1-745 MSVMVNSGDS TLSLGPFVHQ A-GELPVSSH GACSHPHTPL DKLLGKKRKC BACU015100/1-722 MSVMVNSGDS TLSLGPFVHQ A-GELPVSSH GACSHPHTPL DKLLGKKRKC 851 900 ENSP00000381590/1-945 SPSSSSINNS SS--KPTKVA KVPAVNNVHM KHTGTIPGAQ GLMNSSLLHQ ENSBTAP00000014996/1-886 SPGSSGVNSS GGSSKPTKVA KLPAVNNVHA KHVGPSPGAP GLTNSSLLHQ ENSTTRP00000012922/1-925 SPGSSGINSS SS--RPTKVA KLPALNNVHV KHAGPSPGPP GLANSSLLHQ bmy_03778T0/1-745 SPGSSGINSS SG--RPTKVA KLPAVNNVHV KHAGPSPGPP GLANSSLLHQ BACU015100/1-722 SPGSSGINSS SG--RPTKVA KLPAVNNVHV KHAGPSPGPP GLANSSLLHQ 901 950 ENSP00000381590/1-945 DISSPCLRTG ISATSPQSPD LKSKGTSLTA ENSTGRNNAD TFEDKLHLHS ENSBTAP00000014996/1-886 ---------- ---------- ---------- ---------- ----PKAHP- ENSTTRP00000012922/1-925 DTSCPCLQAG ISAVSPQSPT LKSKGTSLTA ENSTGRNNLD TFDDKLHLHS bmy_03778T0/1-745 ---------- ---------- ---------- ---VGQGLGA PWGGPWPLP- BACU015100/1-722 ---------- ---------- ---------- ---------- ---DNWNRY- 951 1000 ENSP00000381590/1-945 ALWTPRCL ENSBTAP00000014996/1-886 -------- ENSTTRP00000012922/1-925 ALWTPRCL bmy_03778T0/1-745 -------- BACU015100/1-722 --------