KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:17 2014 Check: 00 .. Name: bmy_08481T0/1-409 Len: 448 Check: 4677 Weight: 1.00 Name: ENSTTRP00000007042/1-329 Len: 448 Check: 712 Weight: 1.00 Name: ENSBTAP00000014997/1-399 Len: 448 Check: 5980 Weight: 1.00 Name: ENSP00000337354/1-399 Len: 448 Check: 7932 Weight: 1.00 Name: BACU007887/1-289 Len: 448 Check: 6203 Weight: 1.00 // 1 50 bmy_08481T0/1-409 ---MECEYLL EKFLILDPNK RGPLEQIVKD PWITVGHGYE ELKLYMEPLS ENSTTRP00000007042/1-329 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014997/1-399 MKMWLWGLLV CLVLGTLPSQ ASGWKQTPVD PETNMNVS-- ------EIIS ENSP00000337354/1-399 MKMRFLGLVV CLVLWTLHSE GSGGKLTAVD PETNMNVS-- ------EIIS BACU007887/1-289 ---------- ---------- ---------- -------S-- ------EIIS 51 100 bmy_08481T0/1-409 DYQDPGQTEF MASMVTRGDR DPGLTERPER QGQVFFLMAQ PQSTLDGLVL ENSTTRP00000007042/1-329 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000014997/1-399 HWGFPSEEHL VVT------- ---------A DGYILCLNRI PHGR------ ENSP00000337354/1-399 YWGFPSEEYL VET------- ---------E DGYILCLNRI PHGR------ BACU007887/1-289 HWGFPSEEHL VVT------- ---------E DGYILCLNRI PHGR------ 101 150 bmy_08481T0/1-409 LTPKHDCFPG PRPVVFLQHG LLADSSNWVT NLPSSSLGFI LADAGFDVWM ENSTTRP00000007042/1-329 ---------- PKPVVFLQHG LLADSSNWVT NLPNSSLGFI LADAGFDVWM ENSBTAP00000014997/1-399 ---KNRSDKG PKPVVFLQHG LLADSSDWVT NLPNSSLGFI LADAGFDVWM ENSP00000337354/1-399 ---KNHSDKG PKPVVFLQHG LLADSSNWVT NLANSSLGFI LADAGFDVWM BACU007887/1-289 ---KNSSDRG PRPVVFLQHG LLADSSNWVT NLPSSSLGFI LADAGFDVWM 151 200 bmy_08481T0/1-409 GNSRGNTWSQ KHKTLSVSQD EFWAFR---- ---------- ---------- ENSTTRP00000007042/1-329 GNSRGNTWSR KHKTLSIDQD QFWAFRF--- ------PCLD YSYDEXXXXX ENSBTAP00000014997/1-399 GNSRGNTWSR KHKTLSVSQD EFWAFSFDEM ANYDLPASIN FILNKT---- ENSP00000337354/1-399 GNSRGNTWSR KHKTLSVSQD EFWAFSYDEM AKYDLPASIN FILNKT---- BACU007887/1-289 GNSRGNTWSQ KHKTLSVSQD EFWAFSYDEM ANYDLPASIN FILNKT---- 201 250 bmy_08481T0/1-409 ---------- --EKSQKMEF CYFPFVPTGF IAFSRIPELA KKIKMFFALA ENSTTRP00000007042/1-329 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF IAFSRIPELA KKIKMFFALA ENSBTAP00000014997/1-399 ---------- --GQEQLYYV GHSQGTTIGF IAFSRIPELA KKIKMFFALA ENSP00000337354/1-399 ---------- --GQEQVYYV GHSQGTTIGF IAFSQIPELA KRIKMFFALG BACU007887/1-289 ---------- --GQEQVYYV GHSQGTTIGF IAFSRIPELA KKIKVFFALA 251 300 bmy_08481T0/1-409 PVASAKFATS PLVKLGQFPD LLIKDLFGVK EFLPQSTFVK WLSTHVCTRV ENSTTRP00000007042/1-329 PVTSAQFATS PLVKLGRFSD LLIKDLFGVK EFLPQSMFVK WLSTHICTHV ENSBTAP00000014997/1-399 PVASTEFMTG PVVKLAQIPE LFLKDLFGIK EFFPQNTFLK WLSTHMCTHV ENSP00000337354/1-399 PVASVAFCTS PMAKLGRLPD HLIKDLFGDK EFLPQSAFLK WLGTHVCTHV BACU007887/1-289 PVASARFATS PLVKLGQFPD LLIK------ ---------- ---------- 301 350 bmy_08481T0/1-409 ILKELCGNIF FVLCGFNERN LNMSRVAVYA THTPAGTSVQ NMLHWSQLIK ENSTTRP00000007042/1-329 ILKELCGNVF FVMCGFNERN LNMSRVAVYA THCPAGTSVQ NMLHWSQLVK ENSBTAP00000014997/1-399 ILKELCGNVF FVLCGFNERN LNMSRVAVYA THNPAGTSVQ NMIHWLQVVK ENSP00000337354/1-399 ILKELCGNLC FLLCGFNERN LNMSRVDVYT THSPAGTSVQ NMLHWSQAVK BACU007887/1-289 ---------- ---------- ---------- ---------- -------LIK 351 400 bmy_08481T0/1-409 LQKFQAFDWG SSAKNYFHYN QTYPPSYNVR DMLVRTAVWS GGQDWLSDVS ENSTTRP00000007042/1-329 LQKFQAFDWG SSAKNYFHYN QSYPPSYNVR DMLVRTAVWS GGQDWLADVS ENSBTAP00000014997/1-399 LHKFQAFDWG SSAKNYFHYN QSSPPLYNVK DMLVPTAIWS GGRDWLADDK ENSP00000337354/1-399 FQKFQAFDWG SSAKNYFHYN QSYPPTYNVK DMLVPTAVWS GGHDWLADVY BACU007887/1-289 LQKFQAFDWG SSAKNYFHYN QSYPPSYNVR DMLVRTAVWS GGQDWLADVN 401 450 bmy_08481T0/1-409 DVNVLLTQIS NMVYHEHIPE WEHLDFIWGL DAPWRLYNEM INLMRKYQ ENSTTRP00000007042/1-329 DVSVLLTQIS NLVYHKHIPE WEHLDFIWGL DAPWRLYNEI ISLMRKYQ ENSBTAP00000014997/1-399 DIVLLQMQIS NLVYHKRIPE WEHLDFIWGL DAPWKLYNEI INLMRKYQ ENSP00000337354/1-399 DVNILLTQIT NLVFHESIPE WEHLDFIWGL DAPWRLYNKI INLMRKYQ BACU007887/1-289 DVNVLLTQIS NMVYHKHIPE WEHLDFIWGL DAPWRLYNEM INLMRKYQ