KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:20 2014 Check: 00 .. Name: ENSBTAP00000015012/1-426 Len: 521 Check: 8032 Weight: 1.00 Name: ENSP00000360217/1-409 Len: 521 Check: 3532 Weight: 1.00 Name: ENSTTRP00000003293/1-413 Len: 521 Check: 2571 Weight: 1.00 Name: bmy_13137T0/1-478 Len: 521 Check: 7317 Weight: 1.00 Name: BACU018766/1-410 Len: 521 Check: 5498 Weight: 1.00 // 1 50 ENSBTAP00000015012/1-426 MRFKFPLMAI GLEVVMIVLF ALFVQYETSV NTSRNPNETE SAAMDVEKTM ENSP00000360217/1-409 MRFTFPLMAI VLEIAMIVLF GLFVEYETDQ TVLEQLNITK PTDMGI--FF ENSTTRP00000003293/1-413 MRFTFPLMAI GLEVAMIVLF GLFVQYETDQ NVSQQPKSTK SPTVDVDRYL bmy_13137T0/1-478 MRFTFPLMAI GLEVAMIVLF GLFVQYETDQ NVSQQPNSTK SPTMDVDRYL BACU018766/1-410 MRFTFPLMAI GLEVAMIVLF GLFVHYETDQ NFSQQPNSTK SPTVDVDRYL 51 100 ENSBTAP00000015012/1-426 ESYPFFQDVH IMVFAGFGFL MTFLWKYGFS GVGINLLIAA LGLQWGTIIQ ENSP00000360217/1-409 ELYPLFQDVH VMIFVGFGFL MTFLKKYGFS SVGINLLVAA LGLQWGTIVQ ENSTTRP00000003293/1-413 DLYPLFQDVH VMIFAGFGFL MTFLRKYGFS SMGINLLIAA LGLQWGTIVQ bmy_13137T0/1-478 DLYPLFQDVH VMVFAGFGFL MTFLRKYGFS SVGINLLIAA LGLQWGTIAQ BACU018766/1-410 DLYPLFQDVH VMVFAGFGFL MTFLRKYGFS SVGINLLIAA LGLQWGTIAQ 101 150 ENSBTAP00000015012/1-426 GIFRSHGQKF LIEMKNMIHA DFSTVTVLIS FGAVLGKTSP VQMLIMTILE ENSP00000360217/1-409 GILQSQGQKF NIGIKNMINA DFSAATVLIS FGAVLGKTSP TQMLIMTILE ENSTTRP00000003293/1-413 GILQSHGEKF HIEIKNMINA DFSTAAVLIS FGAVLGKTSP IQMLTMTILE bmy_13137T0/1-478 GILQSRGEKF HIEIKNMINA DFSTATVLIS FGAVLGKTSP IQMLTMTILE BACU018766/1-410 GILQSHGEKF HIEIKNMINA DFSTATVLIS FGAVLGKTSP IQMLTMTILE 151 200 ENSBTAP00000015012/1-426 ITVYAANEYL VFKILWASDT GESMTIHAFG AYFGLAVAGI LYRSGLKEKH ENSP00000360217/1-409 IVFFAHNEYL VSEIFKASDI GASMTIHAFG AYFGLAVAGI LYRSGLRKGH ENSTTRP00000003293/1-413 IAVFAVNEHL VVEVFGASDI GASMTIHAFG AYFGLAVAGI LYRSSLKEGH bmy_13137T0/1-478 IAVFAVNEYM VVEIFRASDI GASMTIHAFG AYFGLAVAGI LYRSSLKEGH BACU018766/1-410 IAVFAVNEYL VVEIFGASDT GASMTIHAFG AYFGLAVAGV LYRSSLKEGH 201 250 ENSBTAP00000015012/1-426 PNEESVYHSD LFAMIGSLFL WIFWPSFNSA TADEAKKQYR AIVNTYFSLA ENSP00000360217/1-409 ENEESAYYSD LFAMIGTLFL WMFWPSFNSA IAEPGDKQCR AIVNTYFSLA ENSTTRP00000003293/1-413 RNEESVYHSD LFAMIGTLFL WVFWPSFNSA IADAGKDQYL AIVNTYFSLA bmy_13137T0/1-478 RNEESVYHSD LFAMI----- ---------- ---------- ---------- BACU018766/1-410 RNEESVYHSD LFAMIGTLFL WIFWPSFNSA IANAGKNQYV AIVNTYFSLA 251 300 ENSBTAP00000015012/1-426 ASVVTAYACS SLLESRGKLN MVHIQNATLA GGVAVGTCAD MEIPPYYAMI ENSP00000360217/1-409 ACVLTAFAFS SLVEHRGKLN MVHIQNATLA GGVAVGTCAD MAIHPFGSMI ENSTTRP00000003293/1-413 ACVVTAYACS SLLESRGKLH MVHIQNATLA GGVAIGTTAD MANTPYYAMI bmy_13137T0/1-478 -----AYACS SLLESRGKLH MVHIQNATLA GGVAIGTSAD MANTPYYAMI BACU018766/1-410 ACVVTAYACS SLLESQGKLH MVHIQNATLA GGVAIGTSAD MANTPYYAMI 301 350 ENSBTAP00000015012/1-426 IGSIAGAVSV FGFKFLTPLF TTKLRIHDTC GVHNLHGLPG VIG---GLAG ENSP00000360217/1-409 IGSIAGMVSV LGYKFLTPLF TTKLRIHDTC GVHNLHGLPG VVG---GLAG ENSTTRP00000003293/1-413 IGSIAGVVCV FGFKFLTXXX XXXXXXXXXX XXXXXXXXXX XXX---XXXX bmy_13137T0/1-478 IGSIAGMVSV FGFKFLTPFF TTKLRIHDTC GVHNLHGLPG VIG---GLAS BACU018766/1-410 IGSIAGMVSV FGFKFLTVSI NRYSESNFGS AASSSHIPPA EKSYEKSFPK 351 400 ENSBTAP00000015012/1-426 IITVALEESD STKTVSQAAA LGSSIATALV GGLITGAILK IPFWAQPPDE ENSP00000360217/1-409 IVAVAMGASN T-SMAMQAAA LGSSIGTAVV GGLMTGLILK LPLWGQPSDQ ENSTTRP00000003293/1-413 XXXXXXXXXX XSAMAMQAAA LGSSIGTALV GGLVTGLILK IPIWGQPADQ bmy_13137T0/1-478 IVFIALETAD TSAMAMQAAA LGSSIGTALV GGLVTGLILK IPIWGQPADQ BACU018766/1-410 HLSFGHSTCQ S-AMAMQAAA LGSSIGTALV GGLVTGLILK IPIWGQPADQ 401 450 ENSBTAP00000015012/1-426 DCYDDSVYWE V--------- ---------- ---------- ---------- ENSP00000360217/1-409 NCYDDSVYWK V--------- ---------- ---------- ---------- ENSTTRP00000003293/1-413 DCYDDSVYWE V--------- ---------- ---------- ---------- bmy_13137T0/1-478 DCYDDSVYWE VLYSVLRMYM MTTLGKVLLT SCLDKLDEEK TDFSWQVPFH BACU018766/1-410 DCYDDSVYWE V--------- ---------- ---------- ---------- 451 500 ENSBTAP00000015012/1-426 ---------- ---------- ---------- ---------- ------PERK ENSP00000360217/1-409 ---------- ---------- ---------- ---------- ------PKTR ENSTTRP00000003293/1-413 ---------- ---------- ---------- ---------- ------PRRT bmy_13137T0/1-478 SSESNKKAPH KTIRILGSGL KTDRYLDVFH GTFKENRFGK ANVVRVPRRT BACU018766/1-410 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000015012/1-426 EYDNHFHELL STLH------ - ENSP00000360217/1-409 ---------- ---------- - ENSTTRP00000003293/1-413 E--------- ---------- - bmy_13137T0/1-478 ELDMFSRFHE HGNHNQLEPD A BACU018766/1-410 ---------- ---------- -