KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:21 2014 Check: 00 .. Name: bmy_05345T0/1-1109 Len: 1186 Check: 3467 Weight: 1.00 Name: ENSTTRP00000008648/1-950 Len: 1186 Check: 1284 Weight: 1.00 Name: ENSBTAP00000015019/1-951 Len: 1186 Check: 2697 Weight: 1.00 Name: ENSP00000366396/1-950 Len: 1186 Check: 9159 Weight: 1.00 Name: BACU014850/1-896 Len: 1186 Check: 2548 Weight: 1.00 // 1 50 bmy_05345T0/1-1109 -------MW- ---------- TLNVEPKECS GVKIPVDASK PNPNDVEFDN ENSTTRP00000008648/1-950 MGVPAFFRWL SRKYPSIIVN CVEEKPKECS GVKIPVDASK PNPNDVEFDN ENSBTAP00000015019/1-951 MGVPAFFRWL SRKYPSIIVN CVEEKPKECN GVKIPVDASK PNPNDVEFDN ENSP00000366396/1-950 MGVPAFFRWL SRKYPSIIVN CVEEKPKECN GVKIPVDASK PNPNDVEFDN BACU014850/1-896 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05345T0/1-1109 LYLDMNGIIH PCTHPEDKPA PKNEDEMMVA IFEYIDRLFN IVRPRRLLYM ENSTTRP00000008648/1-950 LYLDMNGIIH PCTHPEDKPA PKNEDEMMVA IFEYIDRLFN IVRPRRLLYM ENSBTAP00000015019/1-951 LYLDMNGIIH PCTHPEDKPA PKNEDEMMVA IFEYIDRLFN IVRPRRLLYM ENSP00000366396/1-950 LYLDMNGIIH PCTHPEDKPA PKNEDEMMVA IFEYIDRLFS IVRPRRLLYM BACU014850/1-896 ----MNGIIH PCTHPEDKPA PKNEDEMMVA IFEYIDRLFN IVRPRRLLYM 101 150 bmy_05345T0/1-1109 AIDGVAPRAK MNQQRSRRFR ASKEGMEAAV EKQRVKEEIL AKGGFLPPEE ENSTTRP00000008648/1-950 AIDGVAPRAK MNQQRSRRFR ASKEGMEAAV EKQRVKEEIL AKGGFLPPEE ENSBTAP00000015019/1-951 AIDGVAPRAK MNQQRSRRFR ASKEGMEAEI EKQRVREEIL AKGGYLPPEE ENSP00000366396/1-950 AIDGVAPRAK MNQQRSRRFR ASKEGMEAAV EKQRVREEIL AKGGFLPPEE BACU014850/1-896 AIDGVAPRAK MNQQRSRRFR ASKEGMEAAV EKQRVKEEIL AKGGFLPPEE 151 200 bmy_05345T0/1-1109 IKERFDSNCI TPGTEFMDNL AKCLRYYIAD RLNNDPGWKN LTVILSDASA ENSTTRP00000008648/1-950 IKERFDSNCI TPGTEFMDNL AKCLRYYIAD RLNNDPGWKN LTVILSDASA ENSBTAP00000015019/1-951 IKERFDSNCI TPGTEFMDNL AKCLRYYIAD RLNNDPGWKN LTVILSDASA ENSP00000366396/1-950 IKERFDSNCI TPGTEFMDNL AKCLRYYIAD RLNNDPGWKN LTVILSDASA BACU014850/1-896 IKERFDSNCI TPGTEFMDNL AKCLRYYIAD RLNNDPGWKN LTVILSDASA 201 250 bmy_05345T0/1-1109 PGEGEHKIMD YIRRQRAQPN HDPNTHHCLC GADADLIMLG LATHEPNFTI ENSTTRP00000008648/1-950 PGEGEHKIMD YIRRQRAQPN HDPNTHHCLC GADADLIMLG LATHEPNFTI ENSBTAP00000015019/1-951 PGEGEHKIMD YIRRQRAQPN HDPNTHHCLC GADADLIMLG LATHEPNFTI ENSP00000366396/1-950 PGEGEHKIMD YIRRQRAQPN HDPNTHHCLC GADADLIMLG LATHEPNFTI BACU014850/1-896 PGEGEHKIMD YIRRQRAQPN HDPNTHHCLC GADADLIMLG LATHEPNFTI 251 300 bmy_05345T0/1-1109 IREEFKPNKP KPCGLCNQFG HE-------- ------HDEL ADSLPCAEGE ENSTTRP00000008648/1-950 IREEFKPNKP KPCGLCNQFG HEVKDCEGLP REKKGKHDEL ADSLPCAEGE ENSBTAP00000015019/1-951 IREEFKPNKP KPCGLCNQFG HDVKDCEGLP REKKGKHDEL ADSLPCAEGE ENSP00000366396/1-950 IREEFKPNKP KPCGLCNQFG HEVKDCEGLP REKKGKHDEL ADSLPCAEGE BACU014850/1-896 IREEFKPNKP KPCGLCNQLG HEVKDCEGLP REKKGKHDEL ADSLPCAEGE 301 350 bmy_05345T0/1-1109 FIFLRLSVLR EYLERELTMA SLPFTFDVER SIDDWVFMCF FVGNDFLPHL ENSTTRP00000008648/1-950 FIFLRLSVLR EYLERELTMA SLPFTFDVER SIDDWVFMCF FVGNDFLPHL ENSBTAP00000015019/1-951 FIFIRLSVLR EYLERELTMA SLPFTFDVER SIDDWVFMCF FVGNDFLPHL ENSP00000366396/1-950 FIFLRLNVLR EYLERELTMA SLPFTFDVER SIDDWVFMCF FVGNDFLPHL BACU014850/1-896 FIFLRLSVLR EYLERELTMA SLPFTFDVER SIDDWVFMCF FVGNDFLPHL 351 400 bmy_05345T0/1-1109 PSLEIREGAI DRLVNIYKNV VHKTGGYLTE SGYVNLQRVQ MIMLAVGEVE ENSTTRP00000008648/1-950 PSLEIREGAI DRLVNIYKNV VHKTGGYLTE SGYVNLQRVQ MIMLAVGEVE ENSBTAP00000015019/1-951 PSLEIREGAI DRLVNIYKNV VHKTGGYLTE SGYVNLQRVQ MIMLAVGEVE ENSP00000366396/1-950 PSLEIRENAI DRLVNIYKNV VHKTGGYLTE SGYVNLQRVQ MIMLAVGEVE BACU014850/1-896 PSLEIREGAI DRLVNIYKNV VHKTGGYLTE SGYVNLQRVQ MIMLAVGEVE 401 450 bmy_05345T0/1-1109 DSIFKKRKDD EDSFRRRQKE KRKRMKRDQP SFSPGGILTP HALGSRNSPG ENSTTRP00000008648/1-950 DSIFKKRKDD EDSFRRRQKE KRKRMKRDQP SFSPGGILTP HALGSRNSPG ENSBTAP00000015019/1-951 DSIFKKRKDD EDSFRRRQKE KRKRMKRDQP SFSPGGILTP HALGSRSSPG ENSP00000366396/1-950 DSIFKKRKDD EDSFRRRQKE KRKRMKRDQP AFTPSGILTP HALGSRNSPG BACU014850/1-896 DSIFKKRKDD EDSFRRRQKE KRKRMKRDQP SFSPGGILTP HALGSRNSPG 451 500 bmy_05345T0/1-1109 SQVAHNPRQA AYEMRMQNNS SPSVSPNASF TSDGSPSPRG GIKRKAEDSD ENSTTRP00000008648/1-950 SQVAHNPRQA AYETRMQNNS SPSVSPNASF TSDGSPSPRG GIKRKVEDSD ENSBTAP00000015019/1-951 SQVASNPRQA AYEMRMQNNL SPSVSPNTSF TSDGSPSPRG GIKRKADDSD ENSP00000366396/1-950 SQVASNPRQA AYEMRMQNNS SPSISPNTSF TSDGSPSPLG GIKRKAEDSD BACU014850/1-896 SQVAHNPRQA AYEMRMQNNS SPSVSPNASF TSDGSPSPRG GIKRKAEDSD 501 550 bmy_05345T0/1-1109 SEPEPEDNVR LWEAGWKQRY YKNKFDVDAA DEKFRRKVVQ SYVEGLCWVL ENSTTRP00000008648/1-950 SEPEPEDNVR LWEAGWKQRY YKNKFDVDAA DEKFRRKVVQ SYVEGLCWVL ENSBTAP00000015019/1-951 SEPEPEDNVR LWEAGWKQRY YKNKFDVDAA DEKFRRKVVQ SYVEGLCWVL ENSP00000366396/1-950 SEPEPEDNVR LWEAGWKQRY YKNKFDVDAA DEKFRRKVVQ SYVEGLCWVL BACU014850/1-896 SEPEPEDNVR LWEAGWKQRY YKNKFDVDAA DEKFRRKVVQ SYVEGLCWVL 551 600 bmy_05345T0/1-1109 RYYYQGCASW KWYYPFHYAP FASDFEGIAD MASDFEKGTK PFKPLEQLMG ENSTTRP00000008648/1-950 RYYYQXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015019/1-951 RYYYQGCASW KWYYPFHYAP FASDFEGIAD MPSDFEKGTK PFKPLEQLMG ENSP00000366396/1-950 RYYYQGCASW KWYYPFHYAP FASDFEGIAD MPSDFEKGTK PFKPLEQLMG BACU014850/1-896 RYYYQGCASW KWYYPFHYAP FASDFEGIAD MASDFEKGTK PFKPLEQLMG 601 650 bmy_05345T0/1-1109 VFPAASGNFL PPSWRKLMSD PDSSIIDFYP EDFAVDLNGK KYAWQGVALL ENSTTRP00000008648/1-950 XXXXXXXXXX XXXXXXXXXX XDSSIIDFYP EDFAVDLNGK KYAWQGVALL ENSBTAP00000015019/1-951 VFPAASGNFL PPSWRKLMSD PDSSIIDFYP EDFAIDLNGK RYAWQGVALL ENSP00000366396/1-950 VFPAASGNFL PPSWRKLMSD PDSSIIDFYP EDFAIDLNGK KYAWQGVALL BACU014850/1-896 VFPAASGNFL PPSWRKLMSD PDSSIIDFYP EDFAVDLNGK KYAWQGVALL 651 700 bmy_05345T0/1-1109 PFVDERRLRA ALEEVYPDLT PEENRRNSLG GDVLFVGKHH PLHDFLLELY ENSTTRP00000008648/1-950 PFVDERRLRA ALEEVYPDLT PEETRRNSLG GDVLFVGKHH PLHDFLLELY ENSBTAP00000015019/1-951 PFVDERRLRA ALEEVYPDLT PEETRRNSLG GDVLFVGKHH PLHDFILELY ENSP00000366396/1-950 PFVDERRLRA ALEEVYPDLT PEETRRNSLG GDVLFVGKHH PLHDFILELY BACU014850/1-896 PFVDERRLRA ALEEVYPDLT PEENRRNSLG GDVLFVGKHH PLHDFLLELY 701 750 bmy_05345T0/1-1109 KTGSTEGSDT --ERCD---- ---------- ---------- ---------- ENSTTRP00000008648/1-950 KTGSTESVDV PPELCHGIQG KFSLDEEAIL PDQIVCSPVP MLRDLTQNAA ENSBTAP00000015019/1-951 KTGSTESVDV PPELCHGIQG KFSLDEEAVL PNQVVCSPIP VLKDLTHNAV ENSP00000366396/1-950 QTGSTEPVEV PPELCHGIQG KFSLDEEAIL PDQIVCSPVP MLRDLTQNTV BACU014850/1-896 KTGSTESMDV PPELCHGIQG KFSLDEEAIL PDQIVCSPVP TLRDLTQNAA 751 800 bmy_05345T0/1-1109 --------QF AEDYIFKAVM LPGARKPAPV LKPGDWEKSS NGRQWKPQLS ENSTTRP00000008648/1-950 ISINFKDPQF AEDYVFKAIM LPGARKPAPV LKPGDWEKSS NGRQWKPQLG ENSBTAP00000015019/1-951 ISINFKDPQF AEDYIFKAVM LPGARKPAPV LKPSDWEKSS NGRQWKPQLG ENSP00000366396/1-950 VSINFKDPQF AEDYIFKAVM LPGARKPAAV LKPSDWEKSS NGRQWKPQLG BACU014850/1-896 ISINFKDPQF AEDYIFKAVM LPGARKPAPV LKPGDWEKSS NGRQWKPQLS 801 850 bmy_05345T0/1-1109 FNRDRRPVHL DPAAFRALGH VMPRGS-GTG VYSNAAPPPA TYQGNLYRPL ENSTTRP00000008648/1-950 FNRDRRPVHL DPAAFRALGH VMPRGS-GTG VYSNAAPPPA TYQGNLYRPL ENSBTAP00000015019/1-951 FNRDRRPVHL DPAAFRALGH VMPRGSSGTG VYSNAAPPPA AFQGNMYRPL ENSP00000366396/1-950 FNRDRRPVHL DQAAFRTLGH VMPRGS-GTG IYSNAAPPPV TYQGNLYRPL BACU014850/1-896 FNRDRRPVHL DPAAFRALGH VMPRGS-GTG VYSNAAPPPA TYQGNLYRPL 851 900 bmy_05345T0/1-1109 LRGQAQIPKL MSKKGMRNKL LFIPLIQKKQ EGLLYCREPS ELLLNQSYTC ENSTTRP00000008648/1-950 LRGQAQIPKL MSNMRPQDSW ---------- ------RGPP PLFQQQRF-- ENSBTAP00000015019/1-951 LRGQAQIPKL MSNVRPQDSW ---------- ------RGPP PLFQQQRF-- ENSP00000366396/1-950 LRGQAQIPKL MSNMRPQDSW ---------- ------RGPP PLFQQQRF-- BACU014850/1-896 LRGQAQIPKL MSNMRPQDSW ---------- ------RGPP PLFQQQRF-- 901 950 bmy_05345T0/1-1109 QRKNQIKPCK KGVLMISFSQ GPVFTVFCLS VCLSVWLNDT EWRIFLFPCG ENSTTRP00000008648/1-950 ---------D RGV------- ---------- ---------- ---------G ENSBTAP00000015019/1-951 ---------D RGV------- ---------- ---------- ---------G ENSP00000366396/1-950 ---------D RGV------- ---------- ---------- ---------G BACU014850/1-896 ---------D RGV------- ---------- ---------- ---------G 951 1000 bmy_05345T0/1-1109 SLPFISISTG IRASKHGDKM RCKCWNQGEM VKVWTDLWRS GFQVEKVGME ENSTTRP00000008648/1-950 AEPLLP---- ---------- ---------- -------WNR MLQTPNAAFQ ENSBTAP00000015019/1-951 AEPLLP---- ---------- ---------- -------WNR MLQTQNAAFQ ENSP00000366396/1-950 AEPLLP---- ---------- ---------- -------WNR MLQTQNAAFQ BACU014850/1-896 AEPLLP---- ---------- ---------- -------WNR MLQTPNAAFQ 1001 1050 bmy_05345T0/1-1109 ALKGCVVERA KCGREKIPDE APCALRAPGG LESLEAQEDG GRWKNMIVLM ENSTTRP00000008648/1-950 ---------- -------PNQ YQM-LAGPGG YAP-RRDDRG GR-------- ENSBTAP00000015019/1-951 ---------- -------PNQ YQM-LAGPGG YPP-RRDDRG GR-------- ENSP00000366396/1-950 ---------- -------PNQ YQM-LAGPGG YPP-RRDDRG GR-------- BACU014850/1-896 ---------- -------PNQ YQM-LAGPGG YAP-RRDDRG GR-------- 1051 1100 bmy_05345T0/1-1109 CVEVEMPEDI DAICLEFTVI KIFLAYLFHG LFECKNRIKR KKSSDSRCFT ENSTTRP00000008648/1-950 ---------- ---------- --------QG Y--------- ---------- ENSBTAP00000015019/1-951 ---------- ---------- --------QG Y--------- ---------- ENSP00000366396/1-950 ---------- ---------- --------QG Y--------- ---------- BACU014850/1-896 ---------- ---------- --------QG Y--------- ---------- 1101 1150 bmy_05345T0/1-1109 QDLFLFSPHE SVFVKMLTPE VHVLIMQFTI SHFFFSLSNG SFRAIQMNDN ENSTTRP00000008648/1-950 -------PRE GRKYPLPPPS ---------- ---------G RY-------- ENSBTAP00000015019/1-951 -------PRE GRKYPLPPPS ---------- ---------G RY-------- ENSP00000366396/1-950 -------PRE GRKYPLPPPS ---------- ---------G RY-------- BACU014850/1-896 -------PRE GRKYPLPPPS ---------- ---------G RY-------- 1151 1200 bmy_05345T0/1-1109 KFVLHSTSLL LSQEIFLLYE HLRAIYIAQS HMKRFV ENSTTRP00000008648/1-950 ---------- ---------- ---------- ---SWN ENSBTAP00000015019/1-951 ---------- ---------- ---------- ---SWN ENSP00000366396/1-950 ---------- ---------- ---------- ---NWN BACU014850/1-896 ---------- ---------- ---------- ---SWN