KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:54:23 2014 Check: 00 .. Name: ENSBTAP00000015044/1-1005 Len: 1135 Check: 7473 Weight: 1.00 Name: ENSTTRP00000015627/1-982 Len: 1135 Check: 6280 Weight: 1.00 Name: bmy_04085T0/1-1088 Len: 1135 Check: 200 Weight: 1.00 Name: BACU016253/1-1047 Len: 1135 Check: 4417 Weight: 1.00 // 1 50 ENSBTAP00000015044/1-1005 MWPPLPPPRP GMSEETRQSK LAAAKKKLRE YQQKNSPGVP AGAKKKRKIK ENSTTRP00000015627/1-982 ---------- -MSEETRQSK LAAAKKKLRE YQQKNSPGVP AAAKKKRKIK bmy_04085T0/1-1088 MWPPLPPPRP GMSEETRQSK LAAAKKKLRE YQQKNSPGVP AGAKKKRKIK BACU016253/1-1047 ---------- -MSEETRQSK LAAAKKKLRE YQQKNNLGVP AGAKKKRKIK 51 100 ENSBTAP00000015044/1-1005 NGSSPETTTS GDCPSPED-- ---------- ---------- -----APKDR ENSTTRP00000015627/1-982 NGSSPEKTTS GGCPSPED-- ---------- ---------- ---------- bmy_04085T0/1-1088 NGSSPETTTS GGCPSPEDIQ DILKVLVSDL NRSNGVAIPP LDKWKAPKDR BACU016253/1-1047 NGSSPETTTS GGCPSPEDIQ DILKVLVSDL NRSNGVAIPP LDKWKAPKDR 101 150 ENSBTAP00000015044/1-1005 AAPVTP--SA DDTVSPGGVP SPSASPPRVT SMASTQNHDA DNGSGPIDES ENSTTRP00000015627/1-982 -TPISADTSV DDTGSPGGVH PPS-SPEGVS STASTQNRDA DNDPSPVDES bmy_04085T0/1-1088 AAPVTP--SA DDTVSPGGVP SPCASPPRVT SMASTQNRDA DHDPSPIDES BACU016253/1-1047 AAPVTP--SA DDTVSPGGVP SPCASPRRVT SMASTQNREA DHDPSPIDES 151 200 ENSBTAP00000015044/1-1005 TSFSSTEGLR QLSQQLNGLV SESSSYINGE GLASPANIKN LESRYQELSV ENSTTRP00000015627/1-982 TSFSSTESLR QLSQQLNGLV SESPSYINGE GLASCTDIKN LESRYQELSV bmy_04085T0/1-1088 TSFSSTESLR QLSQQLNGLV SESPSYINGE DLASCTDIKN LESRYQELSV BACU016253/1-1047 TSFSSTESLR QLSQQLNGLV SESPSYINGE DLASCTDIKN LESRYQELSV 201 250 ENSBTAP00000015044/1-1005 ALDSSNLTNK QLSSKIEELK QENQETLDQL EKEKKEFEQK LAKEQGALRE ENSTTRP00000015627/1-982 AMDSSNLTNK QLSSKIEQLK QEKQETLDRL EKEKKEFEKK LVKEQGALRE bmy_04085T0/1-1088 ALDSSNLTNK QLSSKIEQLK QENQETLDRL EKEKKEFEKK FVKEQGALRE BACU016253/1-1047 ALDSSNLTNT QLSSKIEQLK QENQETLDRL EKEKKEFEKK LVKEQGALRE 251 300 ENSBTAP00000015044/1-1005 QLQVHIQTIG ILVSEKTELQ TALAHTQQAA RQKAGESEDL ANRLQSSRQR ENSTTRP00000015627/1-982 QLQVHIQTIG ILVSEKTELQ TALAHTQQAA RQKAEELEDL ANCLRSSRQR bmy_04085T0/1-1088 QLQVHIQTIG ILVSEKTELQ TALAHTQQAA RQRAGESEDL ANRLQSSRQR BACU016253/1-1047 QLQVHIQTIG ILVSEKTELQ TALAHTQHAA RQRTGELEDL ARRLQSSRQR 301 350 ENSBTAP00000015044/1-1005 VGELERTLSA VSTQQKQADR YNKELTRERD ALKLELYKNN KNNEDLKQHN ENSTTRP00000015627/1-982 VGELERTLSA VSTQQKQADR YNKELTKERD ALRLDLYKNN KSNEDLKQQT bmy_04085T0/1-1088 VGELERTLSA VSTQQKQADR YNKELTKERD ALRLELYKNN KSNEDLKQQT BACU016253/1-1047 VGELERTLSA VSTQQKQADR YNKELTKERD ALRLQLYKNN KSNEDLKQQT 351 400 ENSBTAP00000015044/1-1005 SELEEKLRLL VIEKSAMKLG IEELQKKLEM SELLLQ---- ---------- ENSTTRP00000015627/1-982 SELEEKLRVM AKEKAAMQLG MEELQKKVEM SELLLR---- ---------- bmy_04085T0/1-1088 SELEEKLRVM AXEKAAMQLG MEELQKKMEM SELLLQ---- ---------- BACU016253/1-1047 SELEEKLRVM AKEKAAMQLG IEELQKKMEM SELLLQQHED NLELYIDLLG 401 450 ENSBTAP00000015044/1-1005 ---------- --------QF SSQPAPDSSQ QLQQALEERA QLETHMEQLK ENSTTRP00000015627/1-982 ---------- --------QF SSQPTADSSQ QLQQALNEQA QLETHVEQLK bmy_04085T0/1-1088 ---------- --------QF SSQPTPDSSQ QLQQALEEQA QLETHVEQLK BACU016253/1-1047 GIAWNSLGFP DPTSFFTIQF SSQPTPDSSQ QLQQALEEQA QLETHVEQLK 451 500 ENSBTAP00000015044/1-1005 DSLRQLQAER DQYATNLKEE NAIWQQKMQQ VLEQ-MSKLK EEKERSVCQA ENSTTRP00000015627/1-982 DSLKQLQAER DQYVVNMKEE NAVWQQKMQQ MLEQXXXKLR EEKECSMSQV bmy_04085T0/1-1088 DSLKQLQAER DQYVVNMKEE NAVWQQKMQQ MLEQ-MGKLR EEKECSMSQV BACU016253/1-1047 DSLKQLQAER DQYVVNMKEE NAVWQQKMQQ MLEQ-RGKLR EEKECSMSQV 501 550 ENSBTAP00000015044/1-1005 QELETSLAEL RNQIAAPPPQ EP-------- --PAGPSEAE QRLQAETERL ENSTTRP00000015627/1-982 RELETSL-KL RTEMAVPPPQ EP-------- --PAGPSEVE QRLQAEAEQL bmy_04085T0/1-1088 QELETSLAKL RTEIGKPGPG DPGAGLVSGL EPPAGPSEVE QRLQAEAEQL BACU016253/1-1047 QELETSLAKL RTKIAVPPPQ EP-------- --PAGPSEVE QRLQAEAEQL 551 600 ENSBTAP00000015044/1-1005 QKELESLAGQ LQAQVKDNES LSHLNQEQEQ RLLELEREAE CWGEQAEERK ENSTTRP00000015627/1-982 QKELQSLAQQ LQAQVKDNES LSRLNQEQEQ RLLELERAAE CWGQQAEERR bmy_04085T0/1-1088 QKELQSLAQQ LQAQVKDNES LSRLNQEQEQ RLLELERAAR CWGEQAEERK BACU016253/1-1047 QKELQSLAQQ LQAQVKDNES LSRLNQEQEQ RLLELEQAAR CWGEQAEECK 601 650 ENSBTAP00000015044/1-1005 QILETMQSDR TTISRALSQN RELKEQLAEL QNGFVRLSNE NMEVTSALQS ENSTTRP00000015627/1-982 QILESMQSDR TTISRALFQN RELKEQLAEL QNGFVRLSNE NMEITSALHS bmy_04085T0/1-1088 QILESMQSDR TTISRALSQN RELKEQLAEL QNGF---SNE NMEITSTLQS BACU016253/1-1047 QILESMQSDR TTISRALSQN RELKEQLAEL QNGFVRLSNE NMETTSTLQS 651 700 ENSBTAP00000015044/1-1005 EQHIKKELAK KLGQLQEKLG ELKET----- ---------- ------VEVK ENSTTRP00000015627/1-982 EQHIKKELAK ELEQLQGRLG ELKET----- ---------- ------VEVK bmy_04085T0/1-1088 EQHIKKELAK KLDQQQEELG ELKETSMGSD CGSEPPPALT PRVFPQVEVK BACU016253/1-1047 EQHIKKELAK KLGQLQEKLG ELKET----- ---------- ------VEVK 701 750 ENSBTAP00000015044/1-1005 GQEVQDLQQQ RDEYLNHLQY YVAAYQLHMA ACQQLASDKE ALHKQVLLQT ENSTTRP00000015627/1-982 SQEAQDLQQQ RDQYLSHLQQ YVAAY----- --QQLASEKA GLQKQALLQT bmy_04085T0/1-1088 SQEAQDLQRQ RDQYLSHLQQ YVAAY----- --QQLASEKE VLQKQALLQT BACU016253/1-1047 SQEAQDLQRQ RDQYLSHLQQ YVAAY----- --QQLASEKD VLQKQALLQT 751 800 ENSBTAP00000015044/1-1005 QLMDRLQHEE VQGKVAMEAA RQELQETQER LEAANQQNQQ LQAQLTLMAV ENSTTRP00000015627/1-982 QLMDQLQHEE VQGKVAVQMA HQELQETQER LEAANQQNRQ LQAQLNLMAM bmy_04085T0/1-1088 QLMDQLQHEE VQGKVAVQVA HQELQETQER LEAANQQNRQ LQAQLNLMAV BACU016253/1-1047 QLVDQLQHEE VQGKVAVQMA HQELQETQER LEAANQQNRQ LQAQLNVMAV 801 850 ENSBTAP00000015044/1-1005 PGE-GDGLES EEQDEEAPRP KLSVPEELES REA-----LV EFFHSALASA ENSTTRP00000015627/1-982 PGE-GGGPDG EEKDEEAPRP KLSVPEELDS REL-----LV AFFNSALASA bmy_04085T0/1-1088 PGE-GLPTKT LRRGASLCPP PLAGPEYPAQ KHAHTSCPQV AFFNSALASA BACU016253/1-1047 PGEAGDGLDG EEKEEEAPRP KLSVPEELDS REL-----LV AFFNSALASA 851 900 ENSBTAP00000015044/1-1005 EDEQARLRRQ LKEQKLHCQR LCHLAATAQD GVEKEAPAPR TGGDSVPAEA ENSTTRP00000015627/1-982 EEEQARLRGQ LKEEKLRCQR LAHLAAAAQD GAEKEAPASG IGGDSVPAET bmy_04085T0/1-1088 EEEQARLRGQ LKEEKLRCRR LAHLAAPAQD GAEKEAPASG IGGDSVPAET BACU016253/1-1047 EEEQARLRGQ LKEEKLRCRR LAHLAAPAQD GAEKEAPASG IGGDSVPAET 901 950 ENSBTAP00000015044/1-1005 HQALQVAMDK ---------- ---------- ---------- LQGRFTELMQ ENSTTRP00000015627/1-982 HQALQVAMDK ---------- ---------- ---------- LQGRFTALMQ bmy_04085T0/1-1088 HQALQVAMDK LQVSELPPVG SRKGGGLRSC RCRALTLLFG LQGRFTALMQ BACU016253/1-1047 HQALQVAMDK ---------- ---------- ---------- LQGRFTALMQ 951 1000 ENSBTAP00000015044/1-1005 EKVDLKERVE ELEHRCIQLS GETDTIGEYI ALYQSQRAVL KARHQEKEEY ENSTTRP00000015627/1-982 EKVDLKERVE ELEHRCIQLS GETDTIGEYI ALYQSQRAVL KARHQEKEEY bmy_04085T0/1-1088 EKVDLKERVE ELEHRCIQLS GETDTIGEYI ALYQSQRAVL KARHREKEEY BACU016253/1-1047 EKVDLKEQVE ELDHRCIQLS GETDTIGEYI ALYQSQRAVL KARQREKEEY 1001 1050 ENSBTAP00000015044/1-1005 ISRLAQDKEE MKVKLLELQE LVLCLVGERN EWYGKFLAAQ NPAGEPTTAP ENSTTRP00000015627/1-982 ISRLAQDKEE MKVKLLELRE LVLRLVGERN EWYGKFLAAQ NPAGEPTTAP bmy_04085T0/1-1088 ISRLAQDKEE MKVKLLELRE LVLRLVGERN EWYGKFLAAQ NPAGEPTTAP BACU016253/1-1047 ISRLAQDKEE MKVKLLKLRE LVLHLVGERN EWYGKFLAAQ NPAGEPTTAP 1051 1100 ENSBTAP00000015044/1-1005 HTCQEPSTAD SEGGLQEVSL ADTVEPQQG- TLPGQTTPEN PTAQQIMQLL ENSTTRP00000015627/1-982 PAPQEPGAAE -HGGLREVSL KDNVDPTQGE ALRGQTTPEN PTAQQIMQLL bmy_04085T0/1-1088 PAPQEPGAAD -KGGLREVSL EDNVDPTQGE ALRGQTTPEN PTAQQIMQLL BACU016253/1-1047 PAPQEPGAAD -KGGLREVSL EDHVDPTQGE ALRGQTTPEN PTAQQIMQLL 1101 1150 ENSBTAP00000015044/1-1005 REIQNPQEHP GLGSNPCIPF FYRADDNDEV KIMVI ENSTTRP00000015627/1-982 HEIQNPQECP VLGSSTCVPF FYETDDNDEV KILVV bmy_04085T0/1-1088 REIQNPQERP ALGSNPCIPF FYQADDNDEV KIMVV BACU016253/1-1047 REIQNPQECS VLGSNTCIPF FYQADENDEV KIMVV