KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:28 2014 Check: 00 .. Name: ENSP00000296657/1-494 Len: 494 Check: 918 Weight: 1.00 Name: ENSBTAP00000015064/1-488 Len: 494 Check: 7157 Weight: 1.00 Name: ENSTTRP00000000219/1-483 Len: 494 Check: 4874 Weight: 1.00 Name: bmy_15029T0/1-330 Len: 494 Check: 521 Weight: 1.00 Name: BACU018344/1-476 Len: 494 Check: 2619 Weight: 1.00 // 1 50 ENSP00000296657/1-494 MVLLAGTGPE GGGARCMTPP PPSPPRGAQV EEDPADYEEF EDFSSLPDTR ENSBTAP00000015064/1-488 MVLLAGPGPE GGGARRVSPE PRSPPRDAQA GEDPADYEEY EDFSSLPDTR ENSTTRP00000000219/1-483 MVLLAGPGPE GGGARRVSPQ SPSPPRDAQA GEDPADFEEY EDFSSLPDTR bmy_15029T0/1-330 ---------- ---------- ---------- ---------- ---------- BACU018344/1-476 --------XE GGGARRVSPQ SPSPPRDAQA GEDPADFEEY EDFSSLPDTR 51 100 ENSP00000296657/1-494 SIASDDSFYP FEDEEEHGVE SAESVPEGVP ESVPETATLL RAACANNVGL ENSBTAP00000015064/1-488 SIASDDSFYP YGDEEEYSSV SAESAPEPVP EGVPEAATLL RAACANDVGL ENSTTRP00000000219/1-483 SIASDDSFYP FGGEEEHSSV SAES----VP EAVPEAATLL RAACANDVGL bmy_15029T0/1-330 ---------- ---------- ---------- ---------- ---------- BACU018344/1-476 SIASDDSFYP FGGEEEYSSV SAES----VP EAVPEAATLL RAACANDVGL 101 150 ENSP00000296657/1-494 LRTLVRRGVS VEEAQETDRN GRTGLIVACY HGFVDTVVAL AECPHVDVNW ENSBTAP00000015064/1-488 LRALVRRGPS AEEVQETDRN GRTGLIVACY HGFVDTVVIL AECPHVDVNW ENSTTRP00000000219/1-483 LRALVRRGPS AEEVQETDRN GRTGLIV-CY HGFVDTVVVL ADCPHVDVNW bmy_15029T0/1-330 ---------- ---------- -------MCA FLF------- ---------- BACU018344/1-476 LRALVRRGPS AEEVQETDRN GRTGLIVACY HGFVDTVVVL ADCPHVDVNW 151 200 ENSP00000296657/1-494 QDSEGNTALI TAAQAGHAII TNYLLNYFPG LDLERRNAFG FTALMKAAMQ ENSBTAP00000015064/1-488 QDSEGNTALI TAAQAGHVTI TNYLLNYFPG LDLERRNAFG FTALMKAAMQ ENSTTRP00000000219/1-483 QDSEGNTALI TAAQAGHVTI TNYLLNYFPG LDLERRNVFG FTALMKAAMQ bmy_15029T0/1-330 ---------- ----AGHVTI TNYLLNYFPG LDLERRNVFG FTALMKAAMQ BACU018344/1-476 QDSEGNTALI TAAQAGHVTI TNYLLNYFPG LDLERRNVFG FTALMKAAMQ 201 250 ENSP00000296657/1-494 GRTDCIRALM LAGADVHARD PRRGMSPQEW ATYTGRVDAV RLMQRLLERP ENSBTAP00000015064/1-488 GRTECIRALM LAGADVHARD SRRGMSSQEW ATYTGRFEAV RVIQRLLERP ENSTTRP00000000219/1-483 GRTECIRALM LAGADVHARD PHRGMSSQEW ATYTGRFEAV HVIQRLLERP bmy_15029T0/1-330 GRTECIRALM LAGADVHARD PHRGMSSQEW ATYTGRFEAV HVIQRLLERP BACU018344/1-476 GRTECIRALM LAGADVHARD PHRRMSSQEW ATYTGRFEAV HVIQRLLERP 251 300 ENSP00000296657/1-494 CPEQFWEKYR PELPPPPEAA RKPAGSKNCL QRLTDCVLSV LTPRSVRGPE ENSBTAP00000015064/1-488 CPEQFGVKYK PELPLALEAG QKPTGSKSCL QKLTDFVRST LTSRSRQGME ENSTTRP00000000219/1-483 CPEQFGEKYK PELPLAPEAG PKPAGSKNCL QRLTAFVRSM LTSRLRQGLE bmy_15029T0/1-330 CPEQFGDQYK PELPLAPEAG PKPAGSKNCL QRLTEFVRSI LTSRLRQGLE BACU018344/1-476 CPEQFGEQYK PELPLAPEVG PKPAGSKNCL QRLTEFVRSI LTSRLRQGLE 301 350 ENSP00000296657/1-494 DGGVLDHMVR MTTSLYSPAV AIVCQTVCPE SPPSVGKRRL AVQEILAARA ENSBTAP00000015064/1-488 DGGALDHMVK MTTSLYSPAV AIVCQTVCPE SPPCVGKRRL AVQEILASRG ENSTTRP00000000219/1-483 DGGVLDHMVR MTTSLYSPAV AVVCQTMCPE NPPCVGKRRL AVQEILAARG bmy_15029T0/1-330 DGGVLDHMVR MTTSLYSPAV AVVCQTMCPE NPPCVGKRRL AVQEILAARG BACU018344/1-476 DGGVLDHMVR MTTSLYSPAV AVVCQTMCPE NPPCVGKRRL AVQEILAARG 351 400 ENSP00000296657/1-494 ARGPQAQEED EVGGAGQRGR TGQEDADSRE GSPRAGLPPA LGSRGPAAPA ENSBTAP00000015064/1-488 DQDTQAQERD KGEGPEPQSQ TSQAAGVSKE EAPRAGLA-S --SQPPVA-- ENSTTRP00000000219/1-483 RPDPQAQERD KAEGAEQRFR TSQTAGVSRE GAPRASSTPS --SQLPAA-- bmy_15029T0/1-330 DLDTQAQERD KAEGTEQRFR TSQAAGVSRE GAPRASST-S --SQLPAA-- BACU018344/1-476 DLDTQAQERD KAEGTEQRFR TSQAAGVSRE GAPRASST-S --SQLPAA-- 401 450 ENSP00000296657/1-494 PRKASLLPLQ RLRRRSVRPG VVVPRVRVSK APAPTFQPER PARKGSTKDS ENSBTAP00000015064/1-488 PRRASLLPLQ LLRRSSVRPG VTIPKVRVSK APAPTFQPER AAR-GSTKDS ENSTTRP00000000219/1-483 PRKASLLSLQ LLRRSSVRPG V-VPQVRISK APAPAFQPER AAK-GSTKDS bmy_15029T0/1-330 PRKASLLSLQ LLRRSSVRPG VVIPKVRVSK APAPTFQPER AAK-GSTKDS BACU018344/1-476 PRKASLLSLQ LLRRSSVRPG VVIPKVRVSK APAPTFQPER AAK-GSTKDS 451 500 ENSP00000296657/1-494 GHLQIPKWRY KEAKEEKRKA EEAEKKRQAE AQKERRTAPW KKRT ENSBTAP00000015064/1-488 SHLQLPKWRY KEAKEEKRKA EEAEKQRLAA AQKEKRTSSW RKRT ENSTTRP00000000219/1-483 THVQLPKWRY KEAKEERRKA EEAEKQRLAT AHKEKRAPSW RKRT bmy_15029T0/1-330 AHLQLPKWRY KEAREERRKA EEAEKQRLAT AQKEKRAPSW RKRT BACU018344/1-476 AHLQLPKWRY KEAKEERRKA EEAEKQRLAT AQKEKRAPSW RKRT