KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:30 2014 Check: 00 .. Name: ENSBTAP00000015071/1-1540 Len: 1603 Check: 2053 Weight: 1.00 Name: ENSTTRP00000015921/1-1469 Len: 1603 Check: 2231 Weight: 1.00 Name: ENSP00000419974/1-1514 Len: 1603 Check: 3799 Weight: 1.00 Name: bmy_17628T0/1-1133 Len: 1603 Check: 6264 Weight: 1.00 Name: BACU014640/1-1525 Len: 1603 Check: 1679 Weight: 1.00 // 1 50 ENSBTAP00000015071/1-1540 MEPRSMEYFS AQVQQKDVGG RLQVGQELLL YLGAPGAIPD LEEDLARLSK ENSTTRP00000015921/1-1469 MEPRCMEYFS AQVQQKDVGG RLQVGQELLL YLGVPGAIPD LEEDLGCLGK ENSP00000419974/1-1514 MEPRSMEYFC AQVQQKDVGG RLQVGQELLL YLGAPGAISD LEEDLGRLGK bmy_17628T0/1-1133 MEK------- ---------- ---------- ---------- ---------- BACU014640/1-1525 MEPRCMEYFS AQVQQKDVGG RLQVGQELLL YLGVPGAIPD LEEDLGCLGR 51 100 ENSBTAP00000015071/1-1540 TVDALTGWVG SSNYRVSGGC AAWRGTPSPA GPLIPDVLGR PSGPPGGPGH ENSTTRP00000015921/1-1469 TVDALTGWVG SSNYRVS--- ---------- ------LMG- ---------- ENSP00000419974/1-1514 TVDALTGWVG SSNYRVS--- ---------- ------LMG- ---------- bmy_17628T0/1-1133 ---------- ----TVS--- ---------- ------LMG- ---------- BACU014640/1-1525 TVDALTGWVG SSNYRVS--- ---------- ------LMG- ---------- 101 150 ENSBTAP00000015071/1-1540 LWTCPQRRAC LSESYSLQSK SWVALIIVAL VDRMGDAKDK VRDEAQTLIL ENSTTRP00000015921/1-1469 ----LEILSA FVDRLSTRFK SYVAMVIVAL IDRMGDAKDK VRDEAQTLIL ENSP00000419974/1-1514 ----LEILSA FVDRLSTRFK SYVAMVIVAL IDRMGDAKDK VRDEAQTLIL bmy_17628T0/1-1133 ----LEILSA FVDRLSTRFK SYVAMVIVAL IDRMGDAKDK VRDEAQTLIL BACU014640/1-1525 ----LEILSA FVDRLSTRFK SYVAMVIVAL IDRMGDAKDK VRDEAQTLIL 151 200 ENSBTAP00000015071/1-1540 KLMDQVAPPM YIWEQLASGF KHKNFRSREG VCLCLIETLN IFGAQPLVLS ENSTTRP00000015921/1-1469 KLMDQVAPPM XXXXXXXXXX XXXXXXXXXX XXXXXXXXLN IFGAQPLVLS ENSP00000419974/1-1514 KLMDQVAPPM YIWEQLASGF KHKNFRSREG VCLCLIETLN IFGAQPLVIS bmy_17628T0/1-1133 KLMDQVAPPM ---------- ---------- ---------- ---------- BACU014640/1-1525 KLMDQVAPPM YIWEQLASGF KHKNFRSREG VCLCLIETLN IFGAQPLVLS 201 250 ENSBTAP00000015071/1-1540 KLVPHLCILF GDSNSQVRDA AILAMVEIYR HVGEKVRVDL YKRGIPPARL ENSTTRP00000015921/1-1469 KLVPHLCILF GDSNSQVRDA AILAVVEIYR HVGEKVRVDL YKRGIPLARL ENSP00000419974/1-1514 KLIPHLCILF GDSNSQVRDA AILAIVEIYR HVGEKVRMDL YKRGIPPARL bmy_17628T0/1-1133 ---------- ------VRDA AILAVVEIYR HVGEKVKVDL CKRGIPLARL BACU014640/1-1525 KLVPHLCILF GDSNSQVRDA AILAVVEIYR HVGEKVRVDL CKRGIPLARL 251 300 ENSBTAP00000015071/1-1540 EMILAKFDEV QNSGGMILSA CKDKSFDDEE SVDGNRPSSA ASAFKVPAPK ENSTTRP00000015921/1-1469 EMILGKFDEV QNSGGVILSA CKDKSFDDEE SVDGNRPSSA ASAFKVPAPK ENSP00000419974/1-1514 EMIFAKFDEV QSSGGMILSV CKDKSFDDEE SVDGNRPSSA ASAFKVPAPK bmy_17628T0/1-1133 EMILGKFDEV QNSGGMILSA CKDKSFDDEE SVDGNRPSSA ASAFKVPAPK BACU014640/1-1525 EMILGKFDEV QNSGGMILSA CKDKSFDDEE SVDGNRPSSA ASAFKVPAPK 301 350 ENSBTAP00000015071/1-1540 TSGNPVNSAR KPGS------ --AGGPKLS- GASKEGGAGA VDEDDFIKAF ENSTTRP00000015921/1-1469 TSGNPVNSAR KPGS------ --AGGPKVGA GASKEGGAGA VDEDDFIKAF ENSP00000419974/1-1514 TSGNPANSAR KPGS------ --AGGPKVGA GASKEGGAGA VDEDDFIKAF bmy_17628T0/1-1133 TSGNPVNSAR KPGS------ --AGGPKVG- GASKEGGAGA VDEDDFIKAF BACU014640/1-1525 TSGNPVNSAR KPGSXXXXXX XXAGGPKVG- GASKEGGAGA VDEDDFIKAF 351 400 ENSBTAP00000015071/1-1540 TDVPSVQIYS SRELEETLNK IREILSDDKH DWDQRANALK KIRSLLVAGA ENSTTRP00000015921/1-1469 TDVPSIQIYS SRELEETLNK IREILSDDKH DWDQRANALK KIRSLLVAGA ENSP00000419974/1-1514 TDVPSIQIYS SRELEETLNK IREILSDDKH DWDQRANALK KIRSLLVAGA bmy_17628T0/1-1133 TDVPSIQIYS SRELEETLNK IREILSDDKH DWDQRANA-- ---------- BACU014640/1-1525 TDVPSIQIYS SRELEETLNK IREILSDDKH DWDQRANALK KIRSLLVAGA 401 450 ENSBTAP00000015071/1-1540 AQYDCFFQHL RLLDGALKLS AKDLRSQVVR EACITVAHLS TVLGNKFDHG ENSTTRP00000015921/1-1469 AQYDCFFQHL RLLDGALKLS AKDLRSQVVR EACITVAHLS TVLGNKFDHG ENSP00000419974/1-1514 AQYDCFFQHL RLLDGALKLS AKDLRSQVVR EACITVAHLS TVLGNKFDHG bmy_17628T0/1-1133 ---------- ---------- ---------- ---------- ---------- BACU014640/1-1525 AQYDGFFQHL RLLDGALKLS AKDLRSQVVR EACITVAHLS TVLGNKFDHG 451 500 ENSBTAP00000015071/1-1540 AEAIVPTLFN LVPNSAKVMA TSGCAAIRFI IRHTHVPRLI PLITSNCTSK ENSTTRP00000015921/1-1469 AEAIVPTLFN LVPNSAKVMA TSGCAAIRFI IRHTHVPRLI PLITSNCTSK ENSP00000419974/1-1514 AEAIVPTLFN LVPNSAKVMA TSGCAAIRFI IRHTHVPRLI PLITSNCTSK bmy_17628T0/1-1133 ---------- ---------- ---------- ---------- ------C--- BACU014640/1-1525 AEAIVPTLFN LVPNSAKVMA TSGCAAIRFI IRHTHVPRLI PLITSNCTSK 501 550 ENSBTAP00000015071/1-1540 SVPVRRRSFE FLDLLLQEWQ THSLERHAAV LVETIKKGIH DADAEARVEA ENSTTRP00000015921/1-1469 SVPVRRRSFE FLDLLLQEWQ THSLERHAAV LVETIKKGIH DADAEARVEA ENSP00000419974/1-1514 SVPVRRRSFE FLDLLLQEWQ THSLERHAAV LVETIKKGIH DADAEARVEA bmy_17628T0/1-1133 ---------- ---------- ---------- ---------- ---------- BACU014640/1-1525 SVPVRRRSFE FLDLLLQEWQ THSLERHAAV LVETIKKGIH DADAEARVEA 551 600 ENSBTAP00000015071/1-1540 RKTYMGLRNH FPGEAETLYN SLEPSYQKSL QTYLKSSGSV ASLPQSDRSS ENSTTRP00000015921/1-1469 RKTYMGLRNH FPGEAETLYN SLEPSYQKSL QTYLKSSGSV ASLPQSDRSS ENSP00000419974/1-1514 RKTYMGLRNH FPGEAETLYN SLEPSYQKSL QTYLKSSGSV ASLPQSDRSS bmy_17628T0/1-1133 ---------- ---------- ---------- ----KSHGNF ---------- BACU014640/1-1525 RKTYMGLRNH FPGEAETLYN SLEPSYQKSL QTYLKSSGSV ASLPQSDRSS 601 650 ENSBTAP00000015071/1-1540 SSSQESLNRP FSAKWSTANP SAVAGRVSAG SSKASSLPGS LQRSRSDIDV ENSTTRP00000015921/1-1469 SSSQESLNRP FSSKWSTANP STVAGRVSAG SSKASSLPGS LQRSRSDIDV ENSP00000419974/1-1514 SSSQESLNRP FSSKWSTANP STVAGRVSAG SSKASSLPGS LQRSRSDIDV bmy_17628T0/1-1133 ---------- ----WMCSN- -QIHNSVSAG SSKASSLPGS LQRSRSDIDV BACU014640/1-1525 SSSQESLNRP FSSKWSTANP STVAGRVSAG SSKASSLPGS LQRSRSDIDV 651 700 ENSBTAP00000015071/1-1540 NAAAGAKAHH AAGQAVRSGR LGAGALNPGS YASLEDTSDK MDGTASEDGR ENSTTRP00000015921/1-1469 NAAAGAKAHH AAGQSVRSGR LGAGALNPGS YASLEDTSDK MDLFGST-RR ENSP00000419974/1-1514 NAAAGAKAHH AAGQSVRSGR LGAGALNAGS YASLEDTSDK LDGTASEDGR bmy_17628T0/1-1133 NAAAGAKAHH AAGQAVRSGR LGAGALNPGS YASL------ ---------- BACU014640/1-1525 NAAAGAKAHH AAGQAVRSGR LGAGALNPGS YASL------ --------GR 701 750 ENSBTAP00000015071/1-1540 VRAKLSAPLA SMGNAKTDSR GRSRTKMVSQ SQ-------- -PGSRSGSPG ENSTTRP00000015921/1-1469 VRAKLSAPLA GMGNAKTDSR GRSRTKMVSQ SQ-------- -PGSRSGSPG ENSP00000419974/1-1514 VRAKLSAPLA GMGNAKADSR GRSRTKMVSQ SQ-------- -PGSRSGSPG bmy_17628T0/1-1133 ---------- --GTASED-- ---------- ---------- -AGSRSGSPG BACU014640/1-1525 VRAKLSAPLA GMGNSKTDSR GRSRTKMVSQ SQRSSSPDKN EAGSRSGSPG 751 800 ENSBTAP00000015071/1-1540 RVLTTTALST VSSGVQRVLV NSASTQKRSK IPRSQGCSRE ASPSRLSVAR ENSTTRP00000015921/1-1469 RVLTTTALST VSSGVQRVLV NSASAQKRSK IPRSQGCSRE ASPSRLSVAR ENSP00000419974/1-1514 RVLTTTALST VSSGVQRVLV NSASAQKRSK IPRSQGCSRE ASPSRLSVAR bmy_17628T0/1-1133 RVLTTTALST VSSGVQRVLV NSASAQKRSK IPRSQGCSRE ASPSRLSVAR BACU014640/1-1525 RVLTTTALST VSSGVQRVLV NSASAQKRSK IPRSQGCSRE ASPSRLSVAR 801 850 ENSBTAP00000015071/1-1540 SSRIPRPSVS QGCSREASRE SSRDTSPVRS FQPL------ ---------- ENSTTRP00000015921/1-1469 SSRIPRPSVS QGCSREASRE SSRDTSPVRS FQPLXXXXXX XXXXXXXXPD ENSP00000419974/1-1514 SSRIPRPSVS QGCSREASRE SSRDTSPVRS FQPL------ ---------- bmy_17628T0/1-1133 SSRIPRPSVS QGCSREASRE SSRDTSPVRS FQPL------ ---------- BACU014640/1-1525 SSRIPRPSVS QGCSREASRE SSRDTSPVRS FQPL------ ---------- 851 900 ENSBTAP00000015071/1-1540 ----GPGYGI SQSSRLSSSV SAMRVLNTGS DVEEAVADAL --------KK ENSTTRP00000015921/1-1469 VYGSGPGYGI SQSSRLSSSV SAMRVLNTGS DVEEAVADAL --------KK ENSP00000419974/1-1514 ----GPGYGI SQSSRLSSSV SAMRVLNTGS DVEEAVADAL LLGDIRTKKK bmy_17628T0/1-1133 ----GPGYGI SQSSRLSSSV SAMRVLNTGS DVEEAVADAL LLGDIRTKKK BACU014640/1-1525 ----GPGYGI SQSSRLSSSV SAMRVLNTGS DVEEAVADAL --------KK 901 950 ENSBTAP00000015071/1-1540 PARRRYESYG MHSDDDANSD ASSACSERSY SSRNGSIPTY MRQTEDVAEV ENSTTRP00000015921/1-1469 PARRRYESYG MHSDDDANSD ASSACSERSY SSRNGSIPTY M-QTEDA--V ENSP00000419974/1-1514 PARRRYESYG MHSDDDANSD ASSACSERSY SSRNGSIPTY MRQTEDVAEV bmy_17628T0/1-1133 PARRRYESYG MHSDDDANSD ASSACSERSY SSRNGSIPTY MRQTEDVAEV BACU014640/1-1525 PARRRYESYG MHSDDDANSD ASSACSERSY SSRNGSIPTY MRQTEDVAEV 951 1000 ENSBTAP00000015071/1-1540 LNRCASSNWS ERKEGLLGLQ NLLKNQRTLS RVELKRLCEI FTRMFADPHG ENSTTRP00000015921/1-1469 LNRCASS-LS ERKS--LGLQ --LKNQRTL- RVELKRLCEI FTRMFADPHG ENSP00000419974/1-1514 LNRCASSNWS ERKEGLLGLQ NLLKNQRTLS RVELKRLCEI FTRMFADPHG bmy_17628T0/1-1133 LNRCASSNWS ERKEGLLGLQ NLLKNQRTLS RVELKRLCEI FTRMFADPHG BACU014640/1-1525 LNRCASSNWS ERKEGLLGLQ NLLKNQRTLS RVELKRLCEI FTRMFADPHG 1001 1050 ENSBTAP00000015071/1-1540 KRVFSMFLET LVDFIQVHKD DLQDWLFVLL TQLLKKMGAD LLGSVQAKVQ ENSTTRP00000015921/1-1469 KKVFSMFLET LVDFIQVHKD DLQDWLFVLL TQLLKKMGAD LLGSVQAKVQ ENSP00000419974/1-1514 K-VFSMFLET LVDFIQVHKD DLQDWLFVLL TQLLKKMGAD LLGSVQAKVQ bmy_17628T0/1-1133 K-VFSMFLET LVDFIQVHKD DLQDWLFVLL TQLLKKMGAD LLGSVQAKVQ BACU014640/1-1525 K-VFSMFLET LVDFIQVHKD DLQDWLFVLL TQLLKKMGAD LLGSVQAKVQ 1051 1100 ENSBTAP00000015071/1-1540 KALDVTRESF PNDLQFNILM RFTVDQTQTP SL-------- ---------K ENSTTRP00000015921/1-1469 KALDVTRESF PNDLQFNILM RFTVDQTQTP SL-------- ---------- ENSP00000419974/1-1514 KALDVTRESF PNDLQFNILM RFTVDQTQTP SL-------- ---------K bmy_17628T0/1-1133 KALDVTRESF PNDLQFNILM RFTVDQTQTP SL-------- ---------K BACU014640/1-1525 KALDVTRESF PNDLQFNILM RFTVDQTQTP SLKTVKPALR DQLHSFWSSK 1101 1150 ENSBTAP00000015071/1-1540 VKVAILKYIE TLAKQMDPGD FVNSSETRLA VSRVITWTTE PKSSDVRKAA ENSTTRP00000015921/1-1469 ---------- ---------- ---------- ---------- -------KAA ENSP00000419974/1-1514 VKVAILKYIE TLAKQMDPGD FINSSETRLA VSRVITWTTE PKSSDVRKAA bmy_17628T0/1-1133 VKVAILKYIE TLAKQMDPGD FINSSETRLA VSRVITWTTE PKSSDVRKAA BACU014640/1-1525 VKVAILKYIE TLAKQMDPGD FINSSETRLA VSRVITWTTE PKSSDVRKAA 1151 1200 ENSBTAP00000015071/1-1540 QSVLISLFEL NTPEFTMLLG ALPKTFQDGA TKLLHNHLRN TGNGTQGSMG ENSTTRP00000015921/1-1469 QSVLISLFEL NTPEFTMLLG ALPKTFQDGA TKLLHNHLRN TGNGTQGSMG ENSP00000419974/1-1514 QSVLISLFEL NTPEFTMLLG ALPKTFQDGA TKLLHNHLRN TGNGTQSSMG bmy_17628T0/1-1133 QSVLISLFEL NTPEFTMLLG ALPKTFQDGA TKLLHNHLRN TGNGTQGSMG BACU014640/1-1525 QSVLISLFEL NTPEFTMLLG ALPKTFQDGA TKLLHNHLRN TGNGTQGSMG 1201 1250 ENSBTAP00000015071/1-1540 SPLTRPTPRS PANWSSPLTS PTNTSQNTLS PSAFDYDTEN MNSEDIYSSL ENSTTRP00000015921/1-1469 SPLTRPTPRS PANWSSPLTS PTNTSQNTLS PSAFDYDTEN MNSEDIYSSL ENSP00000419974/1-1514 SPLTRPTPRS PANWSSPLTS PTNTSQNTLS PSAFDYDTEN MNSEDIYSSL bmy_17628T0/1-1133 SPLTRPTPRS PANWSSPLTS PTNTSQNTLS PSAFDYDTEN MNSEDIYSSL BACU014640/1-1525 SPLTRPTPRS PANWSSPLTS PTNTSQNTLS PSAFDYDTEN MNSEDIYSSL 1251 1300 ENSBTAP00000015071/1-1540 RGVTEAIQNF SFRSQEDMNE PLKRDSKKDD GDSMCGGPGM SDPRAGGDAT ENSTTRP00000015921/1-1469 RGVTEAIQNF SFRSQEDMNE PLKRDSKKDE GDSTCGGPGM SDPRAGGDAT ENSP00000419974/1-1514 RGVTEAIQNF SFRSQEDMNE PLKRDSKKDD GDSMCGGPGM SDPRAGGDAT bmy_17628T0/1-1133 RGVTEAIQNF SFRSQEDMNE PLKRDSKKDE GDSTCGGPGM SDPRAGGDAT BACU014640/1-1525 RGVTEAIQNF SFRSQEDMNE PLKRDSKKDE GDSTCGGPGM SDPRAGGDAT 1301 1350 ENSBTAP00000015071/1-1540 DSSQTALDNK ASLLHSMPAH SSPRSRDYNP YNYSDSISPF NKSALKEAMF ENSTTRP00000015921/1-1469 DSSQTALDNK TSLLHSMPAH SSPRSRDYNP YNYSDSISPF NKSALKEAMF ENSP00000419974/1-1514 DSSQTALDNK ASLLHSMPTH SSPRSRDYNP YNYSDSISPF NKSALKEAMF bmy_17628T0/1-1133 DSSQTALDNK ASLLHSMPAH SSPRSRDYNP YNYSDSISPF NKSALKEAMF BACU014640/1-1525 DSSQTALDNK ASLLHSMPAH SSPRSRDYNP YNYSDSISPF NKSALKEAMF 1351 1400 ENSBTAP00000015071/1-1540 DDDADQFPDD LSLDHSDLVA ELLKELSNHN ERVEERKIAL YELMKLTQEE ENSTTRP00000015921/1-1469 DDDADQFPDD LSLDHSDLVA ELLKELSNHN ERVEERKIAL YELMKLTQEE ENSP00000419974/1-1514 DDDADQFPDD LSLDHSDLVA ELLKELSNHN ERVEERKIAL YELMKLTQEE bmy_17628T0/1-1133 DDDADQFPDD LSLDHSDLVA ELLKELSNHN ERVEERKIAL YELMKLTQEE BACU014640/1-1525 DDDADQFPDD LSIDHSDLVA ELLKELSNHN ERVEERKIAL YELMKLTQEE 1401 1450 ENSBTAP00000015071/1-1540 SFSVWDEHFK TILLLLLETL GDKEPTIRAL ALKVLREILR HQPARFKNYA ENSTTRP00000015921/1-1469 SFSVWDEHFK TILLLLLETL GDKEPTIRAL ALKVLREILR HQPARFKNYA ENSP00000419974/1-1514 SFSVWDEHFK TILLLLLETL GDKEPTIRAL ALKVLREILR HQPARFKNYA bmy_17628T0/1-1133 SFSVWDEHFK TILLLLLETL GDKEPTIRAL ALKVLREILR HQPARFKNYA BACU014640/1-1525 SFSVWDEHFK TILLLLLETL GDKEPTIRAL ALKVLREILR HQPARFKNYA 1451 1500 ENSBTAP00000015071/1-1540 ELTVMKTLEA HKDPHKEVVR SAEEAASVLA TSISPEQCIK VLCPIIQTAD ENSTTRP00000015921/1-1469 ELTVMKTLEA HKDPHKEVVR SAEEAASVLA TSISPEQCIK VLCPIIQTAD ENSP00000419974/1-1514 ELTVMKTLEA HKDPHKEVVR SAEEAASVLA TSISPEQCIK VLCPIIQTAD bmy_17628T0/1-1133 ELTVMKTLEA HKDPHKEVVR SAEEAASVLA TSISPEQCIK VLCPIIQTAD BACU014640/1-1525 ELTVMKTLEA HKDPHKEVVR SAEEAASVLA TSISPEQCIK VLCPIIQTAD 1501 1550 ENSBTAP00000015071/1-1540 YPINLAAIKM QTKVIERVSK ETLNLLLPEI MPGLIQGYDN SESSVRKACV ENSTTRP00000015921/1-1469 YPINLAAIKM QTKVIERVSK ETLNLLLPEI MPGLIQGYDN SESSVRKACV ENSP00000419974/1-1514 YPINLAAIKM QTKVIERVSK ETLNLLLPEI MPGLIQGYDN SESSVRKACV bmy_17628T0/1-1133 YPINLAAIKM QTKVIERVSK ETLNLLLPEI MPGLIQGYDN SESSVRKACV BACU014640/1-1525 YPINLAAIKM QTKVIERVSK ETLNLLLPEI MPGLIQGYDN SESSVRKACV 1551 1600 ENSBTAP00000015071/1-1540 FCLVAVHAVI GDELKPHLSQ LTGSKMKLLN LYIKRAQTGS GGVDPTTDVS ENSTTRP00000015921/1-1469 FCLVAVHAVI GDELKPHLSQ LTGSKMKLLN LYIKRAQTGS GGADPTTDVS ENSP00000419974/1-1514 FCLVAVHAVI GDELKPHLSQ LTGSKMKLLN LYIKRAQTGS GGADPTTDVS bmy_17628T0/1-1133 FCLVAVHAVI GDELKPHLSQ LTGSKMKLLN LYIKRAQTGS GGADPTTDVS BACU014640/1-1525 FCLVAVHAVI GDELKPHLSQ LTGSKMKLLN LYIKRAQTGS GGADPTTDVS 1601 1650 ENSBTAP00000015071/1-1540 GQS ENSTTRP00000015921/1-1469 GQS ENSP00000419974/1-1514 GQS bmy_17628T0/1-1133 GQS BACU014640/1-1525 GQS