KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:31 2014 Check: 00 .. Name: ENSTTRP00000011075/1-266 Len: 269 Check: 7170 Weight: 1.00 Name: ENSP00000384396/1-246 Len: 269 Check: 2793 Weight: 1.00 Name: ENSBTAP00000015084/1-253 Len: 269 Check: 3324 Weight: 1.00 Name: bmy_19612T0/1-220 Len: 269 Check: 5992 Weight: 1.00 Name: BACU010292/1-206 Len: 269 Check: 890 Weight: 1.00 // 1 50 ENSTTRP00000011075/1-266 ---PAASRPG FSLGPWGGTS WKQLARGLRW KGCGTGRGGR PAPEARVHFR ENSP00000384396/1-246 ------MEAP EGGG------ ---------- GPAARGPEG- PAPEARVHFR ENSBTAP00000015084/1-253 RGLMEAGGPG TCGG------ ---------- GAETRGSEGR LAPESRVHFR bmy_19612T0/1-220 ---MEAVGPG TCGG------ ---------- GGAALGAEGR PAPEARVHFR BACU010292/1-206 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011075/1-266 VTRFIMEAGV KLGMRSIPIA TACAIYHKFF CEIDLDAYDP YLVAMSSLYL ENSP00000384396/1-246 VARFIMEAGV KLGMRSIPIA TACTIYHKFF CETNLDAYDP YLIAMSSIYL ENSBTAP00000015084/1-253 VTRFIMEAGV KLGMRSIPIA TACTIYHKFF CEINLDAYDP YLVAMSSLYL bmy_19612T0/1-220 VTRFIMEAGV KLGMRSIPIA TACAIYHKFF CEIDLDAYDP YLVAMSSLYL BACU010292/1-206 ---------- ---MRSIPIA TACAIYHKFF CEIDLDAYDP YLVAMSSLYL 101 150 ENSTTRP00000011075/1-266 AGKVEEQRLR TRDIINVSNR YFHPDSEPLE LDSRFWELRD SIVQCELLVL ENSP00000384396/1-246 AGKVEEQHLR TRDIINVSNR YFNPSGEPLE LDSRFWELRD SIVQCELLML ENSBTAP00000015084/1-253 AGKVEEQHLR TRDIINVSNR YFHPGSDPLE LDSRFWEIRD SIVQCELLVL bmy_19612T0/1-220 AGKVEEQHLR TRDIINVSNR YFHPDSEPLE LDSRFWELRD SIVQCELLVL BACU010292/1-206 AGKVEEQHLR TRDIINVSNR YFHPDSEPLE LDSRFWELRD SIVQCELLVL 151 200 ENSTTRP00000011075/1-266 RVLRFQVSFQ HPHKYLLHYL LSVKNWLNRY SWQRSPVSIT AWALLRDSYH ENSP00000384396/1-246 RVLRFQVSFQ HPHKYLLHYL VSLQNWLNRH SWQRTPVAVT AWALLRDSYH ENSBTAP00000015084/1-253 RVLRFQVSFQ HPHKYLLHYL VSLKNWLNRY SWQRTPVSIT AWALLQDSYH bmy_19612T0/1-220 RALRFQVSFQ HPHK------ ----NWLNRY SWQRSPVSIT AWALLRDSYH BACU010292/1-206 RVLRFQVSFQ HPHKYLLHYL VSLKNWLNRY SWQRSPVSIT AWALLRDSYH 201 250 ENSTTRP00000011075/1-266 GGLCLRFQAQ HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VFSEDLTKPI ENSP00000384396/1-246 GALCLRFQAQ HIAVAVLYLA LQVYGVEVPA EVEAEKPWWQ VFNDDLTKPI ENSBTAP00000015084/1-253 GGLCLRFRAQ HIAVAVIHLA LQAYGVEVPA EAEAEKPWWQ VFSEDLTKPT bmy_19612T0/1-220 GGLCLRFQAQ HIAVAVLHLA LQAYGVEVPA EAEAEKPWWQ I--------- BACU010292/1-206 GGLCLRFQAQ HIAVAVLHLA LQAYGVEVPA EAEAEKPWWQ VFSEDLTKPI 251 300 ENSTTRP00000011075/1-266 IDNIVSDLIQ IYTMDTEIP ENSP00000384396/1-246 IDNIVSDLIQ IYTMDTEIP ENSBTAP00000015084/1-253 IDNIVSDLIQ IYTMDTEIP bmy_19612T0/1-220 ---------- -YTMDTEIP BACU010292/1-206 IDNIVSDLIQ IYTMDTEIP