KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:32 2014 Check: 00 .. Name: ENSP00000440207/1-761 Len: 990 Check: 748 Weight: 1.00 Name: ENSTTRP00000001511/1-647 Len: 990 Check: 5889 Weight: 1.00 Name: ENSBTAP00000015086/1-901 Len: 990 Check: 5994 Weight: 1.00 Name: bmy_21148T0/1-929 Len: 990 Check: 3720 Weight: 1.00 Name: BACU008189/1-692 Len: 990 Check: 4036 Weight: 1.00 // 1 50 ENSP00000440207/1-761 MRQDKLTGSL RRGGRCLKRQ GGG------- ---VGTILSN VLKKRSCISR ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 ---------- ---MEVLPAG GGRTGRPQPE ARPEDSGRGV PPAERARGSR bmy_21148T0/1-929 MRQDKLTGSL RRGGRCLKRQ GGGGGGSXGG GGGVGTILSN VLKKRSCISR BACU008189/1-692 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000440207/1-761 TAPRLLCTLE PG-------- ---------- ---------- ---------- ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 DSWEGEEDPE PGEPRGSRTA SLVSGLLTEL Y-SCT----- ---------- bmy_21148T0/1-929 TAPRLLCTLE PGEDPGRQMG HWKVAWRPRS WCLCLSRTPR RPGNTRRGLG BACU008189/1-692 -----LCIFL LG-------- ---------- ---------- ---------- 101 150 ENSP00000440207/1-761 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 ---EEEEAVG GGRGPRGRQR RRDSLDSSTE ASGSDVFLGG RGGAGDSRVL bmy_21148T0/1-929 RPAREERGPR PGRGQRPPTA RRTGCCRRLP ARPHPTACVR SSPACAGSCW BACU008189/1-692 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000440207/1-761 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 QELQ------ ---------- ERPSPRHQMQ YLRQKDMNEL ETILRELKYR bmy_21148T0/1-929 RAMRSVFSEW WESVGGYPGY QRPSNQLCFG PRRSHTLKEV YEAEKGTGLL BACU008189/1-692 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000440207/1-761 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 IGIQSAKLLR QLKQK----- ---------- ---------- ---------- bmy_21148T0/1-929 LGVRGGGSDR EGKNRVHFLE GPCFKIVVIL TNPSQVSARQ GDRHRAQQIW BACU008189/1-692 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000440207/1-761 ---------- ---------- ---------- VDTKLKFTLE PSLGQNGFQQ ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000015086/1-901 ---DRLVHKV QRNCDIVTAC LQAV-SQKRR VDTKLKFTLE PSLGQNGFQQ bmy_21148T0/1-929 DFSRRSLSKV VDNLELEFSC IFNLESIIKR VDTKLKFTLE PSLGQNGFQQ BACU008189/1-692 ---------- ---------- ---------- VDTKLKFTLE PSLGQNGFQQ 301 350 ENSP00000440207/1-761 WYDALKAVAR LSTGIPKEWR RKVWLTLADH YLHSIAIDWD KTMRFTFNER ENSTTRP00000001511/1-647 ---------- ---------- ---------- ---------- --MRFTFNER ENSBTAP00000015086/1-901 WYDALKAVAR LSTGIPKEWR RKVWLTLADH YLHSIAIDWD KTMRFTFNER bmy_21148T0/1-929 ---------- ---------- --VWLTLADH YLHSIAIDWD KTMRFTFNER BACU008189/1-692 WYDALKAVAR LSTGIPKEWR RKVWLTLADH YLHSIAIDWD KTMRFTFNER 351 400 ENSP00000440207/1-761 SNPDDDSMGI QIVKDLHRTG CSSYCGQEAE QDRVVLKRVL LAYARWNKTV ENSTTRP00000001511/1-647 SNPDDDSMGI QIVKDLHRTG CSSYCGQEAE QDRVVLKRVL LAYARWNKNV ENSBTAP00000015086/1-901 SNPDDDSMGI QIVKDLHRTG CSSYCGQEAE QDRVVLKRVL LAYARWNKNV bmy_21148T0/1-929 SNPDDDSMGI QIVKDLHRTG CSSYCGQEAE QDRVVLKRVL LAYARWNKNV BACU008189/1-692 SNPDDDLMGI QIVKDLHRTG CSSYCGQEAE QDRVVLKRVL LAYARWNKNV 401 450 ENSP00000440207/1-761 GYCQGFNILA ALILEVMEGN EGDALKIMIY LIDKVLPESY FVNNLRALSV ENSTTRP00000001511/1-647 GYCQGFNILA ALILEVVEGN EGDALKIMIY LIDKVLPESY FVNNLRALSV ENSBTAP00000015086/1-901 GYCQGFNILA ALILEVVEGN EGDALKIMIY LIDKVLPESY FVNNLRALSV bmy_21148T0/1-929 GYCQGFNILA ALILEVVEGN EGDALKV--- ---------- ---RSKKMSA BACU008189/1-692 GYCQGFNILA ALILEVVEGN EGDALKIMIY LIDKVLPESY FVNNLRALSV 451 500 ENSP00000440207/1-761 DMAVFRDLLR MKLPELSQHL DTLQRTANKE SGGGYEPPLT NVFTMQWFLT ENSTTRP00000001511/1-647 DMAVFRDLLR LKLPELSQHL DTLQKTANKE SGGGYEPPLT NVFTMQWFLT ENSBTAP00000015086/1-901 DMAVFRDLLR LNLPELSQHL DTLQKTANKE SGGGYEPPLT NVFTMQWFLT bmy_21148T0/1-929 GEQI---LFC LYL------- ---------- --GGYEPPLT NVFTMQWFLT BACU008189/1-692 DMAVFRDLLR LKLPELSQHL DTLQKTANKE SGGGYEPPLT NVFTMQWFLT 501 550 ENSP00000440207/1-761 LFATCLPNQT VLKIWDSVFF EGSEIILRVS LAIWAKLGEQ IECCETADEF ENSTTRP00000001511/1-647 LFATCLPNHT VLKIWDSVFF EGSEIILRVS LAIWAKLGEQ IECCETADEF ENSBTAP00000015086/1-901 LFATCLPNHT VLKIWDSVFF EGSEIILRVS LAIWAKLGEQ IECCETADEF bmy_21148T0/1-929 LFATCLPNHT VLKIWDSVFF EGSEIILRVS LAIWAKLGEQ IECCETADEF BACU008189/1-692 LFATCLPNHT VLKIWDSVFF EGSEIILRVS LAIWAKLGEQ IECCETADEF 551 600 ENSP00000440207/1-761 YSTMGRLTQE MLENDLLQSH ELMQTVYSMA PFPFPQLAEL REKYTYNITP ENSTTRP00000001511/1-647 YSTMGRLTQE MLENDLLESH ELMQTVYSMA PFPFPQLAEL REKYTYNITP ENSBTAP00000015086/1-901 YSTMGRLTQE MLENDLLESH ELMQTVYSMA PFPFPQLAEL REKYTYNITP bmy_21148T0/1-929 YSTMGRLTQE MLENDLLESH ELMQTVYSMA PFPFPQLAEL REKYTYNITP BACU008189/1-692 YSTMGRLTQE MLENDLLESH ELMQTVYSMA PFPFPQLAEL REKYTYNITP 601 650 ENSP00000440207/1-761 FPATVKPTSV SGRHSKARDS DEENDPDDED AVVNAVGCLG PFSGFLAPEL ENSTTRP00000001511/1-647 FPATIKPTSV SGRRGKVRDS DEENDPDXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000015086/1-901 FPATVKPTSI SGRHGKVRDS DEENDPDDED VIANAVGCLG PFSGLLAPEL bmy_21148T0/1-929 FPATIKPTSV SGRRGKVRDS DEENDPDDED AIANAVGCLG PFSGLLAPEL BACU008189/1-692 FPATIKPTSV SGRRGKVRDS DEENDPDDED AIANAVGCLG PFSGLLAPEL 651 700 ENSP00000440207/1-761 QKYQKQIKEP NEEQSLRSNN IAELSPGAIN SCRSEYHAAF NSMMMERMTT ENSTTRP00000001511/1-647 XXXXXXXXXP NGDQNLRSNN IAELSPGAIN SCRSEYHAAF NSMMMERMTT ENSBTAP00000015086/1-901 QKYQKQVKES NGDQSLRSNN IAELSPGAIN SCRSEYHAAS NSMMMERMTT bmy_21148T0/1-929 QKYQKQVKEP NGDQNLRSNN IAELSPGAIN SCRSEYHAAF NSMMMERMTT BACU008189/1-692 QKYQKQVKEP NGDQNLRSNN IAELSPGAIN SCRSEYHAAF NSMMMERMTT 701 750 ENSP00000440207/1-761 DINALKRQYS RIKKKQQQQV HQVYIRADKG PVTSILPSQV NSSPVINHLL ENSTTRP00000001511/1-647 DINALKQQYS RIKKKQQQQV HQVYIRADKG PVTSILPSQV NNSPVINHLL ENSBTAP00000015086/1-901 DINALKRQYS RIKKKQQQQV HQVYIRADKG PVTSILPSQV NSSPVINHLL bmy_21148T0/1-929 DINALKQQYS RIKKKQQQQV HQVYIRADKG PVTSILPSQV NNSPVINHLL BACU008189/1-692 DINALKQQYS RIKKKQQQQV HQVYIRA--- ---------- ---------- 751 800 ENSP00000440207/1-761 LGKKMKMTNR AAKNAVIHIP GHTGGKISPV PYEDLKTKLN SPWRTHIRVH ENSTTRP00000001511/1-647 LGKKMKMSNR AAKNAVIHIP GHTGGKVSPV PYEDLRTKLN SPWRTHIRVH ENSBTAP00000015086/1-901 LGKKMKMSNR AAKNAVIHIP GHTGGKISPV PYEDLRTKLN SPWRTHIRVH bmy_21148T0/1-929 LGKKMKTSNR AAKNAVIHIP GHAGGKISPV PYEDFRTKLS SPWRTHIRVH BACU008189/1-692 -GKKMKTSNR AAKNAVIHIP GHTGGKISPV PYEDLRTKLN SPWRTHIRVH 801 850 ENSP00000440207/1-761 KKNMPRTKSH PGCGDTVGLI DEQNEASKTN GLGAAEAFPS GCTATAGREG ENSTTRP00000001511/1-647 KKNTARTKSQ LGCGDTVGLI DEQNEGCKTH SLGAVQGFSS DCAGAAQREG ENSBTAP00000015086/1-901 KKNMARTKSQ LGCGDMVGLI EEQSEGSKTH TLGAAKASPS DCVGTAQ--G bmy_21148T0/1-929 KKNTARTKSQ LGCGDTVGLI EEQNEGCKTH NLGAVQAFSS DCAGAAQREG BACU008189/1-692 KKNTARTKSQ LGCGDTVGLI EEQNEGCKTH NLGTVQAFSS DCAGAAQREG 851 900 ENSP00000440207/1-761 SSPEGSTRRT IEGQSPEPVF GDADVDVSAV QAKLGALELN QRDAAAETEL ENSTTRP00000001511/1-647 GSSDGGTGRT IEGQSPEPLF GDADADVSVV QVKLEALELN ARDAAAETDP ENSBTAP00000015086/1-901 GCSDGSTGRT IEGRSPEPVF GDGDADVSEV QVKIEALELT PRDAAAEPEP bmy_21148T0/1-929 GSSDGGTGRT IEGQSPEPLF GDADADVSVV QVKLEALELN PRDAAAETEP BACU008189/1-692 GSSDGGTGRT IEGQSPEPLF GDADADVSVV QVKLEALELN PRAAAAETEP 901 950 ENSP00000440207/1-761 RVHPPCQRHC PEPPSAPEEN KATSKAPQ-G SNSKTPIFSP FPSVKPLRKS ENSTTRP00000001511/1-647 KVHLPCQQHL PEPPDTPGGN KAPGKSPQ-G SHPKTPIFSP FPSVKPLRKS ENSBTAP00000015086/1-901 RVPPPSQRHF PEPPNAPGGN RVPGKAPQGG SHPKTPIFSP FPSVKPLRKS bmy_21148T0/1-929 KVHLPCQQHL PEPPDAPGGN KAPGKSPQ-G SHTKTPIFSP FPSVKPLRKS BACU008189/1-692 KVHLPCQQHV PEPPDAPGGN KAPGKSPQ-G SHPKTPVFSP FPSVKPLRKS 951 1000 ENSP00000440207/1-761 ATARNLGLYG PTERTPTVHF PQMSRSFSKP GGGNSGTKKR ENSTTRP00000001511/1-647 ATARNLGLYG PTERTPTVHF PYMSRSFSKS SGGNSSTKKR ENSBTAP00000015086/1-901 TAARNLGLYG PTERTPTVHF PHMSRSFSKS GSGNSSTKKR bmy_21148T0/1-929 ATARNLGLYG PTERTPTVHF PYMSRSFSKS SGGNSGTKKR BACU008189/1-692 AAARNLGLYG PTERTPTVHF PYMSRSFSKS SGGNSGTKKR