KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:34 2014 Check: 00 .. Name: ENSTTRP00000003672/1-1180 Len: 1397 Check: 4159 Weight: 1.00 Name: ENSP00000416797/1-1276 Len: 1397 Check: 5821 Weight: 1.00 Name: bmy_22627T0/1-1049 Len: 1397 Check: 1867 Weight: 1.00 Name: BACU002548/1-1129 Len: 1397 Check: 9967 Weight: 1.00 Name: ENSBTAP00000015094/1-1252 Len: 1397 Check: 8317 Weight: 1.00 // 1 50 ENSTTRP00000003672/1-1180 ---------- ---------- ---------- ---------- ---------- ENSP00000416797/1-1276 MVEAAPPGPG PLRRTFLVPE IKSLDQYDFS RAKAAASLAW VLRAAFGGAE bmy_22627T0/1-1049 MVEAAPPGPG PLRRTFLVPE IKSLDQYDFS RAKAAASLAW VLRAAFGGAE BACU002548/1-1129 ---------- MIHLPLLAP- ---------- ---------- --------AE ENSBTAP00000015094/1-1252 MVEAAPPGPG PLRRTFLVPE IKSLDQYDFS RAKAAASLAW VLRAAFGGAE 51 100 ENSTTRP00000003672/1-1180 HVPSELWEPF YTDQYAQEHV KPPVTRLLLS AELYCRAWRQ ALPQLETPPS ENSP00000416797/1-1276 HVPPELWEPF YTDQYAQEHV KPPVTRLLLS AELYCRAWRQ ALPQLETPPN bmy_22627T0/1-1049 LVPSELWEPF YTDQYAQEHV KPPVTRLLLS AELYCRAWRQ ALPQLETPPS BACU002548/1-1129 HVPSELWEPF YTDQYAQEHV KPPVTRLLLS AELYCRAWRQ ALPQLETPPS ENSBTAP00000015094/1-1252 HVPSELWEPF YTDQYAQEHV KPPVTRLLFS AELYCRAWRQ ALPQLEAPPS 101 150 ENSTTRP00000003672/1-1180 PSALLALLAR RGMVPALPER PVQEADLRHQ PILMGAHLAV IDALMVAFAF ENSP00000416797/1-1276 PSALLALLAR RGTVPALPER PVREADLRHQ PILMGAHLAV IDALMAAFAF bmy_22627T0/1-1049 PSALLALLAR RGMVPALPER PVQEADLRHQ PILMGAHLAV IDALMVAFAF BACU002548/1-1129 PSALLALLAR RGMVPALPER PVQEADLRHQ PILMGAHLAV IDALMAAFAF ENSBTAP00000015094/1-1252 PSALLALLAR RGTVPALPER PVQEADLRHQ PILMGAHLAV IDALMVAFAF 151 200 ENSTTRP00000003672/1-1180 EWTKTLPGPL ALASLEHKLL FWVDTTIRRL QEKTEQEAAQ RASPAAPADG ENSP00000416797/1-1276 EWTKTLPGPL ALTSLEHKLL FWVDTTVRRL QEKTEQEAAQ RASPAAPADG bmy_22627T0/1-1049 EWTKTLPGPL ALASLEHKLL FWVDTTIRRL QEKTEQEAAQ RASPTAPADG BACU002548/1-1129 EWTKTLPGPL ALASLEHKLL FWVDTTIRRL QEKTEQEAAQ RASPTAPADG ENSBTAP00000015094/1-1252 EWTKTLPGPL ALASLEHKLL FWVDTTIRRL QEKTEQEAAQ RATPAAPADG 201 250 ENSTTRP00000003672/1-1180 VAPAQAS--- ---------- ---------- ---------- ---------- ENSP00000416797/1-1276 AAPAQPS--- ---------- ---------- ---------- ---------- bmy_22627T0/1-1049 VAPAQASVSL GRWMEGRKEG RALEGWVGRL ELCLEAVPAL GVLEVTLSLS BACU002548/1-1129 VAPAQTS--- ---------- ---------- ---------- ---------- ENSBTAP00000015094/1-1252 VAPAQPS--- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000003672/1-1180 ---------- ---------- ---------- ---------- -----IRYRK ENSP00000416797/1-1276 ---------- --------CP TRWYWKLVPH AIAFCLKESG SKPPMIRYRK bmy_22627T0/1-1049 ALSPLPPLPL SSLPLWHQCP TRWYWKLVP- ---------- -----IRYRK BACU002548/1-1129 ---------- ---------- ---------- ---------- -----IRYRK ENSBTAP00000015094/1-1252 ---------- ---------- ---------- ---------- -----IRYRK 301 350 ENSTTRP00000003672/1-1180 DRAVARRAPC FPTVTSLQDL ASGAALAATI HCYCPQLLRL EXXXXXXXXX ENSP00000416797/1-1276 DRVVARRAPC FPTVTSLQDL ASGAALAATI HCYCPQLLRL EEVCLKDPMS bmy_22627T0/1-1049 DRAVARRAPC FPTVTSLQDL ASGAALAATI HCYCPQLLRL EEVCLKDPMS BACU002548/1-1129 DRAVARRAPC FPTVTSLQDL ASGAALAATI HCYCPQLLRL EEVCLKDPMS ENSBTAP00000015094/1-1252 DRAVARRAPC FPTVTSLQDL ASGAALAATI HCYCPQLLRL EEVCLKDPMS 351 400 ENSTTRP00000003672/1-1180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000416797/1-1276 VADSLYNLQL VQDFCASRLP RGCPLSLEDL LYVPPPLKVN LVVMLAELFM bmy_22627T0/1-1049 VADSLYNLQL VQDFCASRLP RGCPLSLEDL LYVPPPLKIN LMVLLAELFM BACU002548/1-1129 VADSLYNLQL VQDFCASRLP RGCPLSLEDL LYVPPPLKIN LMVLLAELFM ENSBTAP00000015094/1-1252 VADSLYNLQL VQDFCASRLP RGCPLSLEDL LYVPPPLKVN LMVLLAELFM 401 450 ENSTTRP00000003672/1-1180 XXXXXKPDFV QVKDL-DGHA ASHRATEASP PQNNSGS--- -----SSPVF ENSP00000416797/1-1276 CFEVLKPDFV QVKDLPDGHA ASPRGTEASP PQNNSGS--- -----SSPVF bmy_22627T0/1-1049 CFEVLKPDFV QVKDLPDGHA ASHRATEASP PQNNSGSRRG EGGGEGAPRL BACU002548/1-1129 CFEVLKPDFV QVKDLPDGHA ASHRATEASP PQNNSGS--- -----SSPVF ENSBTAP00000015094/1-1252 CFEVLKPDFV QVKDLPDGHA ASPQATEAST PQ-NSGS--- -----SSPVF 451 500 ENSTTRP00000003672/1-1180 N-----FRHP LLSSGGPQS- ---------- ---------- PLRGSTGSLK ENSP00000416797/1-1276 T-----FRHP LLSSGGPQS- ---------- ---------- PLRGSTGSLK bmy_22627T0/1-1049 MRISWQFSCL QLPPSTPVAR QPPVPTPRIH RLAEVLPVHV PRRGPRQSLE BACU002548/1-1129 N-----FRHP LLSHGSPQS- ---------- ---------- PLRGSTGSLK ENSBTAP00000015094/1-1252 N-----FRHP LLSPGGPQS- ---------- ---------- PLRGSTGSLK 501 550 ENSTTRP00000003672/1-1180 SSPSMSHVEA LG-------- --KAWNRQL- --SRPLSQAV SFSTPFGLDS ENSP00000416797/1-1276 SSPSMSHMEA LG-------- --KAWNRQL- --SRPLSQAV SFSTPFGLDS bmy_22627T0/1-1049 PSAQVSASQG PGAVERVGPR LVPGADPSLR PPSRPLSQAV SFSTPFGLDS BACU002548/1-1129 SSPSMSHVEA LG-------- --KAWNRQL- --SRPLSQAV SFSTPFGLDS ENSBTAP00000015094/1-1252 SSPSMSHMEA LG-------- --KAWNRQLR PPSRPLSQAV SFSTPFGLDS 551 600 ENSTTRP00000003672/1-1180 DVD-VMGDPV LLRSVSSDSL GPPRSVPART PTQPAPETSD LPTIEEALQI ENSP00000416797/1-1276 DVDVVMGDPV LLRSVSSDSL GPPRPAPART PTQPPPEPGD LPTIEEALQI bmy_22627T0/1-1049 DVDVVMGDPV LLRSVSSDSL GPPRSVPART PTQPPPETGD LPTIEEALQI BACU002548/1-1129 DVDVVMGDPV LLRSVSSDSL GPPRSVPART PTQPPPETGD LPTIEEALQI ENSBTAP00000015094/1-1252 DVDVVMGDPV LLRSVSSDSL GPQRPVPART PAQPPPETGD LPTIEEALQI 601 650 ENSTTRP00000003672/1-1180 IHSAEPRLLP DGAADGSFYL HSPEGSSKLP LASPYPPEGA --------TK ENSP00000416797/1-1276 IHSAEPRLLP DGAADGSFYL HSPEGPSKPS LASPYLPEGT SKPLSDRPTK bmy_22627T0/1-1049 IHSAEPRLLP DGAADGSFYL HSPEGSSKLP LASPYPPEGA SKPLPDGPTK BACU002548/1-1129 IHSAEPRLLP DGAADGSFYL HSPEGSSKLP LASPYPPEGA SKPLPDGPTK ENSBTAP00000015094/1-1252 IHSAEPRLLP DGAADGSFYL HSPEGSSKLP LASPYPLEGS SKPLPDGPTK 651 700 ENSTTRP00000003672/1-1180 APTYSPHPEG LSKPSPCPVG EVSKPPALSE GSPKAAASSP VASNSEVKMT ENSP00000416797/1-1276 APVYMPHPET PSKPSPCLVG EASKPPAPSE GSPKAVASSP AATNSEVKMT bmy_22627T0/1-1049 APTYSPHPEG LSKPSLCPAG EVSKPPALSE GSPKAAASSP VASNSEVKMT BACU002548/1-1129 APTYSPHPEG LSKPSPCLAG EVSKPPALSE GSPKAAASSP VASNSEVKMT ENSBTAP00000015094/1-1252 VPAYLPHPEG PSKPAPCPAG EVSKPPALPE GSPKVAASSP AASNSEVKMT 701 750 ENSTTRP00000003672/1-1180 SFAERKKQLV KAEAE--AGS PAATPVAPEA LSSEMSELGA RLEEKRRAIE ENSP00000416797/1-1276 SFAERKKQLV KAEAEAGAGS PTSTPAPPEA LSSEMSELSA RLEEKRRAIE bmy_22627T0/1-1049 SFAERKKQLV KAEAE--AGS PAATPVAPEA LSSEMSELGA RLEEKRRAIE BACU002548/1-1129 SFAERKKQLV KAEAE--AGS PAATPVAPEA LSSEMSELGA RLEEKRRAIE ENSBTAP00000015094/1-1252 SFAERKKQLV KAEVE--AGS PVATPGAPEA LSSEMSELGA RLEEKRRAIE 751 800 ENSTTRP00000003672/1-1180 AQKRRIEAIF AKHRQRLGKS AFLQVQPREA GGEAEVEP-- ---GLAPGGE ENSP00000416797/1-1276 AQKRRIEAIF AKHRQRLGKS AFLQVQPREA SGEAEAEAEE ADSGPVPGGE bmy_22627T0/1-1049 AQKRRIEAIF AKHRQRLGKS AFLQVQPREA GGETEAEP-- ---GLAPGGE BACU002548/1-1129 AQKRRIEAIF AKHRQRLGKS AFLQVQLGEA GGEAEAEP-- ---GLAPGGE ENSBTAP00000015094/1-1252 AQKRRIEAIF AKHRQRLGKN AFLQVQPREA GGEAEAEL-- ---GPAPGGE 801 850 ENSTTRP00000003672/1-1180 RPAGEGQGEP SPRPKAVTFS PELGPVPPEG LGDYNRAVSK LSAALSSLQR ENSP00000416797/1-1276 RPAGEGQGEP TSRPKAVTFS PDLGPVPHEG LGEYNRAVSK LSAALSSLQR bmy_22627T0/1-1049 RPAGEGQGEP SPRPKAVTFS PELGPVPPEG LGEYNRAVSK LSAALSSLQR BACU002548/1-1129 RPAGEGQGEP SPRPKAVTFS PELGPAPPEG LGEYNRAVSK LSAALSSLQR ENSBTAP00000015094/1-1252 RPAGEGQGEP SPRPKAVTFS PELGPVPPEG LGDYNRAVSK LSAALNSLQR 851 900 ENSTTRP00000003672/1-1180 DMQRLTDQQQ RLLAPQEPS- -GPAPPPAAW VIPGPTTGPK AASPSPARRA ENSP00000416797/1-1276 DMQRLTDQQQ RLLAPPEAP- -GSAPPPAAW VIPGPTTGPK AASPSPARRV bmy_22627T0/1-1049 DMQRLTDQQQ RLLAPPEPS- -GPAPPPAAW LIPGPTTGPK AASPSPARRA BACU002548/1-1129 DMQRLTDQQQ RLLAPPEPS- ---------- ---------- ---------- ENSBTAP00000015094/1-1252 DMQRLTDQQQ RLLAPPESST VAPTPAAAAW VIPGPTAGPK AASPSPARRA 901 950 ENSTTRP00000003672/1-1180 PAARRSPGP- ---GPSPTPR SPKHARPAEL RLAPLTRVLT PPHDVDSLPH ENSP00000416797/1-1276 PATRRSPGP- ---GPSQSPR SPKHTRPAEL RLAPLTRVLT PPHDVDSLPH bmy_22627T0/1-1049 AAARRSPGP- ---GPSPTPR SPKHARPAEL RLAPLTRVLT PPHDVDSLPH BACU002548/1-1129 -------GP- ---APPPA-- ---------- ---------- ------ALPH ENSBTAP00000015094/1-1252 PAARRSHGPG PSPGPSPTPR SPKHARPAEL RLAPLTRVLT PPHDVDSLPH 951 1000 ENSTTRP00000003672/1-1180 LRKFSPSQVP MQTRSSILLA EGPPPEEPAG RPALVEIPLS SLEEPTAEDD ENSP00000416797/1-1276 LRKFSPSQVP VQTRSSILLA EETPPEEPAA RPGLIEIPLG SLADPAAEDE bmy_22627T0/1-1049 LRKFSPSQVP MQTRSSILLA EGPPPEEPAA RPGLVEIPLS SLEEPTAEDE BACU002548/1-1129 LRKFSPSQVP MQTRSSILLA EGPPPEEPAA RPGLVEIPLS SLEEPTAEDE ENSBTAP00000015094/1-1252 LRKFSPSQVP VQTRSSILLA EGPPPEEPAA RPGLIEIPLS SLEEPAAEDE 1001 1050 ENSTTRP00000003672/1-1180 GDGSPPGAED SLEEEASSEG EPRTGLGFFY KDEDKPEDEM AQKRASLLER ENSP00000416797/1-1276 GDGSPAGAED SLEEEASSEG EPRVGLGFFY KDEDKPEDEM AQKRASLLER bmy_22627T0/1-1049 GDGSPPGAED SLEEEASSEG EPRPGLGFFY KDEDKPEDEM AQKRASLLER BACU002548/1-1129 GDGSPPGAED SLEEEASSEG EPRTGLGFFY KDEDKPEDEM AQKRASLLER ENSBTAP00000015094/1-1252 GDGSPPGAED SLEEEVSSEG EPRTGLGFFY KDEDKPEDEM AQKRASLLER 1051 1100 ENSTTRP00000003672/1-1180 QQRRVEDARR RKQWQEAEKE QRREEAARLA QEEA--PGPA PAAPAAPAST ENSP00000416797/1-1276 QQRRAEEARR RKQWQEVEKE QRREEAARLA QEEA--PGPA PLVSAVPMAT bmy_22627T0/1-1049 QQRRVEDARR RKQWQEAEKE QRREEAAR-- ---------- ---------- BACU002548/1-1129 QQRRVEDARR RKQWQEAEKE QRREEAARLA QEEV------ ---------- ENSBTAP00000015094/1-1252 QQRRAEEARR RKQWQEAEKE QRREEASRLV QEEVTPSPPA PTAPTASAAI 1101 1150 ENSTTRP00000003672/1-1180 AAPATRAPAE EEVGPRRGEF TRLEYERRAQ LKLMDDLDKV LRPRAMGSGG ENSP00000416797/1-1276 PAPAARAPAE EEVGPRKGDF TRQEYERRAQ LKLMDDLDKV LRPRAAGSGG bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ---------- BACU002548/1-1129 -APAGRAPAE EEVGPRRGDF TRLEYERRAQ LKLMDDLDKV LRPRATGSGG ENSBTAP00000015094/1-1252 PAPAARAPAE EEVGPRRGEF TRLEYERRAQ LKLMDDLDKV LRPRAAGSGG 1151 1200 ENSTTRP00000003672/1-1180 PGRGGRRAPR PRSGCCDDSA LARSTARGL- ------SRLS KVYSQSTLSL ENSP00000416797/1-1276 PGRGGRRATR PRSGCCDDSA LARSPARGLL -----GSRLS KIYSQSTLSL bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ---------- BACU002548/1-1129 PGRGGGRAPR PRSGCCDDSA LARSPARGLL GEAPVGSRLS KVYSQSTLSL ENSBTAP00000015094/1-1252 PGRGGRRAPR PRSGCCDDSA LARSPARGLL -----GSRLS KIYSQSTLSL 1201 1250 ENSTTRP00000003672/1-1180 STVANEAPNN LGVKRPTSRA PSPSSLMSPS RLPGSREREW ENGSNASSPA ENSP00000416797/1-1276 STVANEAHNN LGVKRPTSRA PSPSGLMSPS RLPGSRERDW ENGSNASSPA bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ---------- BACU002548/1-1129 STVASEAPGN LGVKRPTSRA PAPSSLMSPS CLPGSREREW ENGSNASSPA ENSBTAP00000015094/1-1252 STVANEGPSN LGVKRPTSRA PSPSGLMSPS RLPGSREREW DNGSNASSPA 1251 1300 ENSTTRP00000003672/1-1180 SVPEYTGPRL YKEPSAKSNK FIIHNALSHC CLAGKVNEPQ KNRILEEIEK ENSP00000416797/1-1276 SVPEYTGPRL YKEPSAKSNK FIIHNALSHC CLAGKVNEPQ KNRILEEIEK bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ---------- BACU002548/1-1129 SVPEYTGPRL YKEPSAKSNK FIIHNALSHC CLAGKVNEPQ KNRILEEIEK ENSBTAP00000015094/1-1252 SVPEYTGPRL YKEPSAKSNK FIIHNALSHC CLAGKVNEPQ KNRILEEIEK 1301 1350 ENSTTRP00000003672/1-1180 SKANHFLILF RDSSCQFRAL YTLSGETEEL SRLTGYGPRT VTPAMVEGIY ENSP00000416797/1-1276 SKANHFLILF RDSSCQFRAL YTLSGETEEL SRLAGYGPRT VTPAMVEGIY bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ---------- BACU002548/1-1129 SKANHFLILF RDSSCQFRAL YTPSGETEEL SRLTGYGPRT VTPAMVEGIY ENSBTAP00000015094/1-1252 SKANHFLILF RDSSCQFRAL YTLSAETEEL SRLAGYGPRT VTPAMVEGIY 1351 1400 ENSTTRP00000003672/1-1180 KYNSDRKRFT QIPAKTMSMS VDAFTIQGHL WQSKKPTTPK KGSSTPK ENSP00000416797/1-1276 KYNSDRKRFT QIPAKTMSMS VDAFTIQGHL WQGKKPTTPK KGGGTPK bmy_22627T0/1-1049 ---------- ---------- ---------- ---------- ------- BACU002548/1-1129 KYNSDRKRFT QIPAKTMSMS VDAFTIQGHL WQSKKPTTPK KGSSTPK ENSBTAP00000015094/1-1252 KYNSDRKRFT QIPAKTMSMS VDAFTIQGHL WQSKKPTTPK KGSSTPK