KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:54:34 2014 Check: 00 .. Name: ENSP00000312027/1-240 Len: 277 Check: 4697 Weight: 1.00 Name: ENSBTAP00000015095/1-202 Len: 277 Check: 9800 Weight: 1.00 Name: ENSTTRP00000002987/1-206 Len: 277 Check: 1701 Weight: 1.00 Name: bmy_02227T0/1-245 Len: 277 Check: 1799 Weight: 1.00 Name: BACU011645/1-208 Len: 277 Check: 4936 Weight: 1.00 // 1 50 ENSP00000312027/1-240 ---------- ---------- ---------- -------MAG PPRLLLLPLL ENSBTAP00000015095/1-202 ---------- ---------- ---------- -------MVG LLGLLLFPLL ENSTTRP00000002987/1-206 ---------- ---------- ---------- -------MAG LLGLQLLPML bmy_02227T0/1-245 LLQVCFSIPG GQLRATGLLS ILPSALGRHW HVWAPVNMAG LLGLQLLPML BACU011645/1-208 ---------- ---------- ---------- -------MAG LLGLQLLPML 51 100 ENSP00000312027/1-240 LALARGLPGA LAAQEVQQSP HCTTVPVGAS VNITCSTSGG LRGIYLRQLG ENSBTAP00000015095/1-202 ---------- QAAGEVWQSP RKTIALEGDS VNITCSTPGT LHGIYLKKTW ENSTTRP00000002987/1-206 LVL----PRN LAAQEVWQSP TYTIALEGDS VNITCSSRGP LLGLYLKQRW bmy_02227T0/1-245 LVL----PCN LAAQEVWQSP TYTIALEGDS VNITCSTLGP LLGIYLKQRW BACU011645/1-208 LVL----PCN LAAQEVWQSP TYTIALEGDS VNITCSTLGP LLGIYLKQRW 101 150 ENSP00000312027/1-240 PQPQDIIYYE DGVVPTTDRR FRGRIDFSGS QDNLTITMHR LQLSDTGTYT ENSBTAP00000015095/1-202 PNNSDVIYYE DGSEPTVDPQ FQGRIAYSGL QSNLTISLYH LQLADTGGYT ENSTTRP00000002987/1-206 P-CSNVIYYE NGKEPTVDQR FQGRVTFSGL QYNLTISMHH LQLADTGDYA bmy_02227T0/1-245 PKPSNVIYYE NGREPTVDQR FRGRITFSGL QHNLTISVHH LQLADTGDYA BACU011645/1-208 RKLSNVIYYE NGREPTVDQR FQGRITFSGL QHNLTISMHH LQLADTGDYA 151 200 ENSP00000312027/1-240 CQAITEVNVY GSGTLVLVTE EQSQGWHRCS DAPPRASALP APPTGSALPD ENSBTAP00000015095/1-202 CVAIMDDKIF GPGTLVMVTD QLPQAANTCQ ES-------- ---------- ENSTTRP00000002987/1-206 CQAIMNDEVW GPGTLVVVTE KLPQTVNTCQ DS-------- ---------- bmy_02227T0/1-245 CQAIMNSEVW GPGTLVVVTE KLPQTENTCQ ET-------- ---------- BACU011645/1-208 CQAIMNNEVW GPGTLVVVTE KLPQTENTCQ ET-------- ---------- 201 250 ENSP00000312027/1-240 PQTASALPDP PAASALPAAL AVISFLLGLG LGVACVLART QIKKLCSWRD ENSBTAP00000015095/1-202 ---------W PIHFALPTAL AVGFFLIGLG LGAVCVLIRT QIQKLCCAKD ENSTTRP00000002987/1-206 ---------- LIHFALPTAL AMGFFLVGLG LGAVCVLRRT QIQKLCCAKE bmy_02227T0/1-245 ---------Q LIHFALPTAL AVGFXLVGLG LGAVCVLRRT QIQKLCCARD BACU011645/1-208 ---------Q QIHFALPMAL AVGFFLVGLG LGAVCVLRRT QIQKLCCARD 251 300 ENSP00000312027/1-240 KNSAACVVYE DMSHSRCNTL SSPNQYQ ENSBTAP00000015095/1-202 KSP-VFVIYE DMSHSRCNTM SIPNQYQ ENSTTRP00000002987/1-206 KNS-VCVVYE DMSHRRCNTT SIPNHYQ bmy_02227T0/1-245 KNS-ACVIYE DMSHSRCNTM SIPNQYQ BACU011645/1-208 KNS-ACVIYE DMSHSRCNTM SIPNQYQ